Variant report

Variant nsv880833
Chromosome Location chr5:52502168-52544231
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:137 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:52489000-52507000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr5:52489600-52507800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
3 chr5:52506800-52508200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
4 chr5:52506800-52508200 Enhancers HMEC breast
5 chr5:52506800-52508200 Enhancers NHEK skin
6 chr5:52507000-52507400 Enhancers iPS-15b Cell Line embryonic stem cell
7 chr5:52507000-52507400 Enhancers iPS-18 Cell Line embryonic stem cell
8 chr5:52507000-52508200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr5:52507400-52507800 Enhancers HUVEC blood vessel
10 chr5:52507400-52508200 Enhancers Muscle Satellite Cultured Cells --
11 chr5:52507400-52508200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr5:52507400-52508400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr5:52507800-52508000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
14 chr5:52508200-52508400 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr5:52508200-52509600 ZNF genes & repeats Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr5:52509600-52540000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr5:52515200-52515600 Active TSS GM12878-XiMat blood
18 chr5:52525400-52526000 ZNF genes & repeats H9 Cell Line embryonic stem cell
19 chr5:52526000-52526600 Active TSS Fetal Heart heart
20 chr5:52526600-52526800 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr5:52526800-52528000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr5:52528000-52529000 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr5:52529000-52535200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr5:52530200-52540000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr5:52532000-52532200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
26 chr5:52533200-52535400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr5:52533600-52534200 Enhancers HSMM muscle
28 chr5:52533600-52534200 Enhancers HSMMtube muscle
29 chr5:52534200-52540600 Weak transcription HSMM muscle
30 chr5:52535000-52536600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr5:52535000-52536600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr5:52535200-52535600 Enhancers Muscle Satellite Cultured Cells --
33 chr5:52535200-52535600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
34 chr5:52535200-52535600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr5:52535200-52535600 Enhancers Adipose Nuclei Adipose
36 chr5:52535200-52535600 Enhancers HMEC breast
37 chr5:52535200-52535600 Enhancers NHDF-Ad bronchial
38 chr5:52535200-52535800 Enhancers NHEK skin
39 chr5:52535200-52535800 Enhancers Osteobl bone
40 chr5:52535400-52535600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
41 chr5:52535400-52535800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr5:52535400-52536800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr5:52535400-52536800 Enhancers NHLF lung
44 chr5:52535600-52539200 Weak transcription HMEC breast
45 chr5:52535600-52539800 Weak transcription NHDF-Ad bronchial
46 chr5:52535600-52540600 Weak transcription Muscle Satellite Cultured Cells --
47 chr5:52535600-52540600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr5:52535600-52540600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr5:52535600-52541200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr5:52535800-52540600 Weak transcription NHEK skin

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