Variant report
Variant | nsv881102 |
---|---|
Chromosome Location | chr4:189388597-189931630 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1909)
- CpG islands (count:2748)
- Chromatin interactive region (count:15)
- LncRNA region (count:66)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr4:189659351-189659620 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr4:189527693-189528168 | HepG2 | liver: | n/a | n/a |
3 | ARID3A | chr4:189455499-189455789 | HepG2 | liver: | n/a | n/a |
4 | ARID3A | chr4:189499935-189500273 | HepG2 | liver: | n/a | n/a |
5 | ARID3A | chr4:189456095-189456482 | HepG2 | liver: | n/a | n/a |
6 | ATF1 | chr4:189739516-189739798 | K562 | blood: | n/a | n/a |
7 | ATF2 | chr4:189897697-189898163 | H1-hESC | embryonic stem cell: | n/a | n/a |
8 | ATF3 | chr4:189743843-189744148 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | BACH1 | chr4:189649632-189649850 | H1-hESC | embryonic stem cell: | n/a | n/a |
10 | BACH1 | chr4:189897579-189898573 | H1-hESC | embryonic stem cell: | n/a | chr4:189897879-189897893 |
11 | BACH1 | chr4:189580313-189580512 | H1-hESC | embryonic stem cell: | n/a | n/a |
12 | BATF | chr4:189855675-189855824 | GM12878 | blood: | n/a | n/a |
13 | BATF | chr4:189855678-189855822 | GM12878 | blood: | n/a | n/a |
14 | BCL11A | chr4:189897805-189898172 | H1-hESC | embryonic stem cell: | n/a | chr4:189897882-189897891 |
15 | BCL11A | chr4:189897882-189898134 | H1-hESC | embryonic stem cell: | n/a | chr4:189897882-189897891 |
16 | BCL3 | chr4:189717818-189718056 | GM12878 | blood: | n/a | n/a |
17 | BCL3 | chr4:189862683-189863381 | A549 | lung: | n/a | n/a |
18 | BHLHE40 | chr4:189456176-189456442 | HepG2 | liver: | n/a | n/a |
19 | BHLHE40 | chr4:189539576-189539609 | K562 | blood: | n/a | n/a |
20 | BHLHE40 | chr4:189527879-189528027 | HepG2 | liver: | n/a | n/a |
21 | BRCA1 | chr4:189404735-189404847 | Hela-S3 | cervix: | n/a | n/a |
22 | BRCA1 | chr4:189732419-189732499 | HepG2 | liver: | n/a | n/a |
23 | CBX3 | chr4:189852029-189852275 | K562 | blood: | n/a | n/a |
24 | CBX3 | chr4:189851902-189852434 | HCT-116 | colon: | n/a | n/a |
25 | CBX3 | chr4:189855440-189855898 | HCT-116 | colon: | n/a | n/a |
26 | CBX3 | chr4:189862742-189863478 | HCT-116 | colon: | n/a | n/a |
27 | CBX3 | chr4:189862644-189863423 | HCT-116 | colon: | n/a | n/a |
28 | CEBPB | chr4:189823307-189823526 | H1-hESC | embryonic stem cell: | n/a | chr4:189823418-189823429 chr4:189823395-189823406 |
29 | CEBPB | chr4:189809080-189809552 | IMR90 | lung: | n/a | chr4:189809265-189809274 chr4:189809263-189809276 chr4:189809264-189809275 chr4:189809265-189809274 chr4:189809263-189809276 chr4:189809263-189809274 chr4:189809265-189809274 chr4:189809265-189809274 |
30 | CEBPB | chr4:189897632-189897935 | ECC-1 | luminal epithelium: | n/a | chr4:189897782-189897795 |
31 | CEBPB | chr4:189549147-189549347 | A549 | lung: | n/a | n/a |
32 | CEBPB | chr4:189690675-189690948 | IMR90 | lung: | n/a | chr4:189690814-189690827 chr4:189690816-189690827 |
33 | CEBPB | chr4:189877723-189878027 | IMR90 | lung: | n/a | chr4:189877861-189877872 |
34 | CEBPB | chr4:189584573-189585174 | A549 | lung: | n/a | n/a |
35 | CEBPB | chr4:189456046-189456370 | HepG2 | liver: | n/a | n/a |
36 | CEBPB | chr4:189897705-189898254 | ECC-1 | luminal epithelium: | n/a | chr4:189897782-189897795 |
37 | CEBPB | chr4:189808534-189808641 | H1-hESC | embryonic stem cell: | n/a | chr4:189808580-189808591 chr4:189808581-189808590 |
38 | CEBPB | chr4:189628311-189628484 | A549 | lung: | n/a | n/a |
39 | CEBPB | chr4:189618382-189618748 | IMR90 | lung: | n/a | chr4:189618559-189618570 |
40 | CEBPB | chr4:189618387-189618747 | HepG2 | liver: | n/a | chr4:189618559-189618570 |
41 | CEBPB | chr4:189560699-189560954 | A549 | lung: | n/a | n/a |
42 | CEBPB | chr4:189618399-189618727 | A549 | lung: | n/a | chr4:189618559-189618570 |
43 | CEBPB | chr4:189907207-189907893 | A549 | lung: | n/a | chr4:189907394-189907405 |
44 | CEBPB | chr4:189789096-189789198 | IMR90 | lung: | n/a | chr4:189789127-189789138 |
45 | CEBPB | chr4:189618280-189618777 | HCT-116 | colon: | n/a | chr4:189618559-189618570 |
46 | CEBPB | chr4:189493631-189493895 | A549 | lung: | n/a | chr4:189493776-189493787 |
47 | CEBPB | chr4:189663658-189663821 | IMR90 | lung: | n/a | n/a |
48 | CEBPB | chr4:189618403-189618710 | Hela-S3 | cervix: | n/a | chr4:189618559-189618570 |
49 | CEBPB | chr4:189808507-189808669 | HepG2 | liver: | n/a | chr4:189808580-189808591 chr4:189808581-189808590 |
50 | CEBPB | chr4:189862562-189863383 | A549 | lung: | n/a | chr4:189862837-189862848 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:189602161-189602211 | RPTEC | kidney: | n/a |
2 | chr4:189612833-189612883 | SAEC | small airway: | n/a |
3 | chr4:189612833-189612883 | GM06990 | blood: | n/a |
4 | chr4:189602161-189602211 | RPTEC | kidney: | n/a |
5 | chr4:189612833-189612883 | SAEC | small airway: | n/a |
6 | chr4:189612833-189612883 | GM06990 | blood: | n/a |
7 | chr4:189602236-189602286 | IMR90 | lung: | fetal |
8 | chr4:189895469-189895519 | K562 | blood: | n/a |
9 | chr4:189871012-189871062 | BJ | skin: | n/a |
10 | chr4:189433040-189433090 | AG09319 | gingival: | n/a |
11 | chr4:189602161-189602211 | HUVEC | blood vessel: | n/a |
12 | chr4:189659523-189659573 | HRCEpiC | kidney: | n/a |
13 | chr4:189476745-189476795 | MCF-7 | breast: | n/a |
14 | chr4:189433040-189433090 | NH-A | brain: | n/a |
15 | chr4:189433040-189433090 | SK-N-SH | brain: | n/a |
16 | chr4:189476745-189476795 | Hepatocyte | liver: | n/a |
17 | chr4:189700628-189700678 | HCT-116 | colon: | n/a |
18 | chr4:189602161-189602211 | U87 | brain: | n/a |
19 | chr4:189895469-189895519 | HRPEpiC | eye: | n/a |
20 | chr4:189577711-189577761 | Hepatocyte | liver: | n/a |
21 | chr4:189541174-189541224 | T-47D | breast: | n/a |
22 | chr4:189433040-189433090 | T-47D | breast: | n/a |
23 | chr4:189659523-189659573 | NB4 | blood: | n/a |
24 | chr4:189860869-189860919 | BJ | skin: | n/a |
25 | chr4:189552339-189552389 | NH-A | brain: | n/a |
26 | chr4:189580633-189580683 | HRE | kidney: | n/a |
27 | chr4:189552677-189552727 | PrEC | prostate: | n/a |
28 | chr4:189895923-189895973 | GM12892 | blood: | n/a |
29 | chr4:189541174-189541224 | HIPEpiC | eye: | n/a |
30 | chr4:189572647-189572697 | AG10803 | skin: | n/a |
31 | chr4:189928662-189928712 | IMR90 | lung: | fetal |
32 | chr4:189578842-189578892 | NB4 | blood: | n/a |
33 | chr4:189551752-189551802 | AG09309 | skin: | n/a |
34 | chr4:189659523-189659573 | AG04449 | skin: | fetal |
35 | chr4:189395410-189395460 | SK-N-MC | brain: | n/a |
36 | chr4:189433040-189433090 | AG10803 | skin: | n/a |
37 | chr4:189895469-189895519 | HEEpiC | esophagus: | n/a |
38 | chr4:189548707-189548757 | PrEC | prostate: | n/a |
39 | chr4:189580331-189580381 | SKMC | muscle: | n/a |
40 | chr4:189485260-189485310 | HRPEpiC | eye: | n/a |
41 | chr4:189552386-189552436 | AG04449 | skin: | fetal |
42 | chr4:189700628-189700678 | MCF-7 | breast: | n/a |
43 | chr4:189743072-189743122 | HMEC | breast: | n/a |
44 | chr4:189476613-189476663 | BJ | skin: | n/a |
45 | chr4:189871012-189871062 | HCPEpiC | choroid plexus: | n/a |
46 | chr4:189860820-189860870 | MCF-7 | breast: | n/a |
47 | chr4:189655175-189655225 | AG04449 | skin: | fetal |
48 | chr4:189552622-189552672 | GM12891 | blood: | n/a |
49 | chr4:189580633-189580683 | NH-A | brain: | n/a |
50 | chr4:189580633-189580683 | GM06990 | blood: | n/a |
(count:15 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:189659615..189661129-chr6:153313575..153315096,2 | K562 | blood: | |
2 | chr4:189658248..189662329-chr6:153321108..153324955,4 | K562 | blood: | |
3 | chr4:189704602..189705331-chr9:126840912..126841898,2 | MCF-7 | breast: | |
4 | chr4:189617734..189620588-chr4:189620667..189622688,2 | K562 | blood: | |
5 | chr4:189510385..189513322-chr4:189513349..189516296,2 | MCF-7 | breast: | |
6 | chr4:189427438..189430236-chr6:107435359..107438052,2 | MCF-7 | breast: | |
7 | chr4:189390737..189392481-chr4:189394126..189396910,2 | K562 | blood: | |
8 | chr4:189390737..189392481-chr4:189394126..189396910,2 | K562 | blood: | |
9 | chr4:189855824..189858176-chr4:189947358..189950070,2 | K562 | blood: | |
10 | chr4:189659109..189659751-chr6:153323423..153323945,2 | NB4 | blood: | |
11 | chr4:189510385..189513322-chr4:189513349..189516296,2 | MCF-7 | breast: | |
12 | chr4:189702571..189703442-chr4:190123148..190123787,2 | MCF-7 | breast: | |
13 | chr4:189658110..189659728-chr6:153322361..153324298,2 | MCF-7 | breast: | |
14 | chr4:189617734..189620588-chr4:189620667..189622688,2 | K562 | blood: | |
15 | chr4:189659633..189661135-chr6:153323368..153324975,2 | MCF-7 | breast: |
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-TRIML1-4 | chr4:189699838-189700133 | ENSG00000249269 |
2 | lnc-TRIML1-10 | chr4:189613729-189613822 | ucscGeneNc_uc003izp_1 |
3 | lnc-TRIML1-3 | chr4:189398906-189399066 | NONHSAT099749 |
4 | lnc-TRIML2-6 | chr4:189716390-189716718 | NONHSAT099763 |
5 | lnc-TRIML2-6 | chr4:189698770-189699205 | XLOC_004227 |
6 | lnc-TRIML2-6 | chr4:189712226-189712445 | XLOC_004227 |
7 | lnc-TRIML2-6 | chr4:189712226-189712445 | NONHSAT099763 |
8 | lnc-TRIML1-3 | chr4:189406933-189407019 | ENSG00000249378 |
9 | lnc-TRIML1-3 | chr4:189457889-189459706 | XLOC_003834 |
10 | lnc-TRIML2-6 | chr4:189698833-189699205 | ENSG00000250626 |
11 | lnc-TRIML1-4 | chr4:189689945-189690019 | ENSG00000249269 |
12 | lnc-TRIML1-5 | chr4:189697811-189697921 | XLOC_003836 |
13 | lnc-TRIML2-6 | chr4:189712226-189712445 | XLOC_004227 |
14 | lnc-TRIML2-6 | chr4:189712226-189712445 | XLOC_004227 |
15 | lnc-TRIML1-10 | chr4:189694883-189696700 | ucscGeneNc_uc003izp_1 |
16 | lnc-TRIML1-3 | chr4:189406933-189407076 | NONHSAT099746 |
17 | lnc-TRIML1-3 | chr4:189397852-189397910 | XLOC_003834 |
18 | lnc-TRIML1-3 | chr4:189398792-189399066 | XLOC_003834 |
19 | lnc-TRIML1-3 | chr4:189406933-189407011 | XLOC_003834 |
20 | lnc-TRIML2-6 | chr4:189716390-189716930 | XLOC_004227 |
21 | lnc-TRIML2-6 | chr4:189738798-189738928 | XLOC_004227 |
22 | lnc-TRIML1-3 | chr4:189397852-189397910 | NONHSAT099745 |
23 | lnc-TRIML1-3 | chr4:189397852-189397910 | ENSG00000249378 |
24 | lnc-TRIML2-6 | chr4:189738716-189738928 | XLOC_004227 |
25 | lnc-TRIML1-3 | chr4:189522922-189523062 | ENSG00000249378 |
26 | lnc-TRIML2-6 | chr4:189739480-189739775 | XLOC_004227 |
27 | lnc-TRIML1-3 | chr4:189406933-189407019 | XLOC_003834 |
28 | lnc-TRIML1-5 | chr4:189706916-189707064 | XLOC_003836 |
29 | lnc-TRIML2-6 | chr4:189716390-189717788 | XLOC_004227 |
30 | lnc-TRIML2-6 | chr4:189712226-189712445 | XLOC_004227 |
31 | lnc-TRIML2-6 | chr4:189716390-189717787 | ENSG00000250626 |
32 | lnc-TRIML2-6 | chr4:189698833-189699205 | XLOC_004227 |
33 | lnc-TRIML1-3 | chr4:189397852-189397910 | XLOC_003834 |
34 | lnc-TRIML1-5 | chr4:189706450-189706665 | XLOC_003836 |
35 | lnc-TRIML1-10 | chr4:189634846-189634904 | ucscGeneNc_uc003izp_1 |
36 | lnc-TRIML1-5 | chr4:189706415-189706559 | XLOC_003836 |
37 | lnc-TRIML1-3 | chr4:189522922-189523062 | NONHSAT099745 |
38 | lnc-TRIML1-5 | chr4:189705067-189705165 | XLOC_003836 |
39 | lnc-TRIML1-10 | chr4:189635786-189636060 | ucscGeneNc_uc003izp_1 |
40 | lnc-TRIML2-6 | chr4:189712226-189712445 | ENSG00000250626 |
41 | lnc-TRIML1-3 | chr4:189398792-189399066 | NONHSAT099746 |
42 | lnc-TRIML2-6 | chr4:189739480-189739606 | XLOC_004227 |
43 | lnc-TRIML1-3 | chr4:189406933-189407019 | NONHSAT099745 |
44 | lnc-TRIML2-7 | chr4:189911869-189912208 | XLOC_004228 |
45 | lnc-TRIML2-7 | chr4:189922924-189923229 | XLOC_004228 |
46 | lnc-TRIML2-6 | chr4:189717890-189717959 | XLOC_004227 |
47 | lnc-TRIML1-3 | chr4:189601875-189602205 | ENSG00000249378 |
48 | lnc-TRIML1-3 | chr4:189406933-189407019 | ENSG00000249378 |
49 | lnc-TRIML1-3 | chr4:189522922-189523025 | NONHSAT099749 |
50 | lnc-TRIML1-9 | chr4:189661661-189662435 | NONHSAT099754 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000250024 | TF binding region |
ENSG00000249269 | TF binding region |
RNU7-192P | TF binding region |
LINC01060 | TF binding region |
ENSG00000251619 | TF binding region |
ENSG00000250523 | TF binding region |
ENSG00000180015 | TF binding region |
ENSG00000250626 | TF binding region |
ENSG00000250024 | CpG island |
ENSG00000249269 | CpG island |
RNU7-192P | CpG island |
LINC01060 | CpG island |
ENSG00000251619 | CpG island |
ENSG00000250523 | CpG island |
ENSG00000180015 | CpG island |
ENSG00000250626 | CpG island |
ENSG00000178409 | chromatin interactions |
ENSG00000112031 | chromatin interactions |
PRNP | miRNA target sites |
RASSF2 | miRNA target sites |
KCNK1 | miRNA target sites |
PTGFRN | miRNA target sites |
FAM104A | miRNA target sites |
BMPR2 | miRNA target sites |
TAPBP | miRNA target sites |
UBFD1 | miRNA target sites |
USP1 | miRNA target sites |
SHCBP1 | miRNA target sites |
MAP2K4 | miRNA target sites |
DIP2C | miRNA target sites |
MPP5 | miRNA target sites |
PFN2 | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs314064 | chr4:189388597-189388598 | Weak transcription Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
2 | rs567611081 | chr4:189388638-189388639 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs314063 | chr4:189388668-189388669 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
4 | rs76685042 | chr4:189388690-189388691 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs184794728 | chr4:189388749-189388750 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs370438461 | chr4:189388769-189388770 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs536955336 | chr4:189388836-189388837 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs137997466 | chr4:189388863-189388864 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs188349423 | chr4:189388885-189388886 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs56371520 | chr4:189388899-189388900 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
11 | rs571564674 | chr4:189388908-189388909 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs552825083 | chr4:189388946-189388947 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs572913249 | chr4:189388955-189388956 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs545099866 | chr4:189388994-189388995 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs180808075 | chr4:189389004-189389005 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs578188631 | chr4:189389047-189389048 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs75543037 | chr4:189389073-189389074 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs564006179 | chr4:189389125-189389126 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs57393916 | chr4:189389159-189389160 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs142096491 | chr4:189389169-189389170 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs314062 | chr4:189389170-189389171 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
22 | rs559460066 | chr4:189389194-189389195 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs186691580 | chr4:189389322-189389323 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs551420168 | chr4:189389325-189389326 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs377326795 | chr4:189389326-189389327 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs530614515 | chr4:189389330-189389331 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs553999198 | chr4:189389332-189389333 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs543129088 | chr4:189389342-189389343 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs189552630 | chr4:189389351-189389352 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs558002717 | chr4:189389368-189389369 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs567532607 | chr4:189389410-189389411 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs182140472 | chr4:189389414-189389415 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs536124958 | chr4:189389484-189389485 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs375113590 | chr4:189389600-189389601 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs552957205 | chr4:189389626-189389627 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs186791919 | chr4:189389634-189389635 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs538749398 | chr4:189389660-189389661 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs190314612 | chr4:189389748-189389749 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs369614572 | chr4:189389775-189389776 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs398051376 | chr4:189389790-189389791 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs536498199 | chr4:189389794-189389795 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs62352711 | chr4:189389796-189389797 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs544010511 | chr4:189389797-189389798 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs557403077 | chr4:189389803-189389804 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs369847699 | chr4:189389805-189389806 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs574296626 | chr4:189389811-189389812 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs369029268 | chr4:189389826-189389827 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs542904364 | chr4:189389828-189389829 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs368897161 | chr4:189389837-189389838 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs528457532 | chr4:189389841-189389842 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Breast cancer | 21858162 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Gastric cancer | 21586687 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Medulloblastoma | 18056178 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
4q-syndrome | 17576883 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Muscular dystrophy | 21149563 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Liposarcoma | 21253554 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Cervical cancer | 21062161 | CNVD |
Breast cancer | 16608533 | CNVD |
Wilms tumour | 21544195 | CNVD |
Lung cancer | 18438408 | CNVD |
Cancer | 22429812 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Breast cancer | 16272173 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Congenital anomalies of the kidney and urinary tract | 20505237 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Breast cancer | 21785460 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
small cell lung cancer | 20016488 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Breast cancer | 21633010 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Cancer | 20581869 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
abnormal development | 18461090 | CNVD |
Neuroblastoma | 16790693 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Congenital anomalies of the kidney and urinary tract | 18316590 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Facioscapulohumeral muscular dystrophy | 21829175 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Autism | 18414403 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Cancer | 20164920 | CNVD |
Cancer | 20164919 | CNVD |
Breast cancer | 20409316 | CNVD |
Rhabdomyosarcoma | 16790082 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Schizophrenia | 21399695 | CNVD |
Developmental delay | 22127048 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Cervical cancer | 21063398 | CNVD |
Cognitive impairment | 21505072 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Tetralogy of Fallot | 22912587 | CNVD |
Epilepsy | 21635232 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Autism | 20531469 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Sinonasal adenocarcinoma | 21360264 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Schizophrenia | 17989066 | CNVD |
Breast cancer | 22522925 | CNVD |
Autism | 20858243 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:189366000-189415600 | Weak transcription | Osteobl | bone |
2 | chr4:189376800-189416200 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
3 | chr4:189385400-189415800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
4 | chr4:189385600-189394800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
5 | chr4:189387000-189394000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
6 | chr4:189388000-189388600 | Strong transcription | Breast Myoepithelial Primary Cells | Breast |
7 | chr4:189388600-189393800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
8 | chr4:189393800-189396000 | Strong transcription | Breast Myoepithelial Primary Cells | Breast |
9 | chr4:189394000-189397400 | Strong transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
10 | chr4:189394200-189395400 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
11 | chr4:189394400-189395200 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
12 | chr4:189394400-189395400 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
13 | chr4:189394400-189396600 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
14 | chr4:189394800-189395200 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
15 | chr4:189394800-189395200 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
16 | chr4:189394800-189395200 | Enhancers | Placenta Amnion | Placenta Amnion |
17 | chr4:189395000-189395400 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
18 | chr4:189395000-189396000 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
19 | chr4:189395200-189395400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
20 | chr4:189395200-189396000 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
21 | chr4:189395200-189398200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
22 | chr4:189395400-189395600 | Flanking Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
23 | chr4:189395600-189395800 | Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
24 | chr4:189395800-189396400 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
25 | chr4:189396000-189398200 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
26 | chr4:189396400-189397000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
27 | chr4:189396600-189401800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
28 | chr4:189397400-189398200 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
29 | chr4:189397600-189407400 | Weak transcription | HMEC | breast |
30 | chr4:189398200-189398400 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
31 | chr4:189398200-189399000 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
32 | chr4:189398200-189399000 | Enhancers | Cortex derived primary cultured neurospheres | brain |
33 | chr4:189398200-189401400 | Strong transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
34 | chr4:189398400-189398600 | Flanking Active TSS | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
35 | chr4:189398400-189398800 | Enhancers | Ganglion Eminence derived primary cultured neurospheres | brain |
36 | chr4:189398600-189399000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
37 | chr4:189398800-189401600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
38 | chr4:189399000-189401000 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
39 | chr4:189399000-189401600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
40 | chr4:189399000-189402200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
41 | chr4:189401000-189402400 | Enhancers | Cortex derived primary cultured neurospheres | brain |
42 | chr4:189401400-189402000 | Genic enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
43 | chr4:189401600-189401800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
44 | chr4:189401600-189402400 | Enhancers | Ganglion Eminence derived primary cultured neurospheres | brain |
45 | chr4:189401600-189402600 | Genic enhancers | Breast Myoepithelial Primary Cells | Breast |
46 | chr4:189401800-189402200 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
47 | chr4:189401800-189402200 | ZNF genes & repeats | Pancreatic Islets | Pancreatic Islet |
48 | chr4:189402000-189416200 | Strong transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
49 | chr4:189402200-189403200 | Strong transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
50 | chr4:189402200-189403400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |