Variant report

Variant	nsv881221
Chromosome Location	chr5:27401935-27660532
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1157)
CpG islands
(count:427)
Chromatin interactive
region (count:32)
LncRNA
region (count:45)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1157 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:27471950-27472762	HepG2	liver:	n/a	n/a
2	ATF1	chr5:27428887-27428920	K562	blood:	n/a	n/a
3	ATF1	chr5:27558936-27558964	K562	blood:	n/a	n/a
4	ATF2	chr5:27472335-27472849	H1-hESC	embryonic stem cell:	n/a	n/a
5	ATF2	chr5:27472100-27472589	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr5:27480439-27480694	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF3	chr5:27652535-27652935	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF3	chr5:27652689-27652930	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr5:27556668-27556706	K562	blood:	n/a	n/a
10	BACH1	chr5:27472602-27472610	H1-hESC	embryonic stem cell:	n/a	n/a
11	BHLHE40	chr5:27473428-27473653	HepG2	liver:	n/a	n/a
12	BHLHE40	chr5:27473142-27473831	HepG2	liver:	n/a	n/a
13	BHLHE40	chr5:27473412-27473860	A549	lung:	n/a	n/a
14	BHLHE40	chr5:27619787-27619798	GM12878	blood:	n/a	n/a
15	BHLHE40	chr5:27473140-27473798	GM12878	blood:	n/a	n/a
16	BHLHE40	chr5:27523477-27524035	K562	blood:	n/a	n/a
17	BHLHE40	chr5:27472077-27472614	GM12878	blood:	n/a	n/a
18	BHLHE40	chr5:27473085-27473935	K562	blood:	n/a	n/a
19	BHLHE40	chr5:27523586-27524110	HepG2	liver:	n/a	n/a
20	BRCA1	chr5:27403373-27403840	Hela-S3	cervix:	n/a	n/a
21	BRCA1	chr5:27573051-27573067	Hela-S3	cervix:	n/a	n/a
22	BRCA1	chr5:27472043-27473952	Hela-S3	cervix:	n/a	n/a
23	CEBPB	chr5:27547098-27547158	HepG2	liver:	n/a	n/a
24	CEBPB	chr5:27472163-27473883	Hela-S3	cervix:	n/a	n/a
25	CEBPB	chr5:27652664-27653021	HepG2	liver:	n/a	chr5:27652846-27652857
26	CEBPB	chr5:27521041-27521386	IMR90	lung:	n/a	chr5:27521082-27521099 chr5:27521085-27521098
27	CEBPB	chr5:27448587-27448827	HepG2	liver:	n/a	chr5:27448671-27448682
28	CEBPB	chr5:27611413-27611655	Hela-S3	cervix:	n/a	chr5:27611459-27611470 chr5:27611545-27611556
29	CEBPB	chr5:27554811-27555129	HepG2	liver:	n/a	chr5:27554975-27554986
30	CEBPB	chr5:27510109-27510409	A549	lung:	n/a	chr5:27510236-27510247
31	CEBPB	chr5:27434396-27434708	A549	lung:	n/a	chr5:27434536-27434547 chr5:27434534-27434547 chr5:27434534-27434545
32	CEBPB	chr5:27531759-27531985	H1-hESC	embryonic stem cell:	n/a	n/a
33	CEBPB	chr5:27448645-27448696	Hela-S3	cervix:	n/a	chr5:27448671-27448682
34	CEBPB	chr5:27488786-27488986	HepG2	liver:	n/a	chr5:27488807-27488820 chr5:27488848-27488857 chr5:27488846-27488857 chr5:27488809-27488820 chr5:27488809-27488820 chr5:27488807-27488818 chr5:27488807-27488820
35	CEBPB	chr5:27556354-27556563	HepG2	liver:	n/a	chr5:27556450-27556461
36	CEBPB	chr5:27402961-27403754	Hela-S3	cervix:	n/a	n/a
37	CEBPB	chr5:27414276-27414476	HepG2	liver:	n/a	n/a
38	CEBPB	chr5:27521019-27521350	HepG2	liver:	n/a	chr5:27521082-27521099 chr5:27521085-27521098
39	CEBPB	chr5:27496448-27496745	Hela-S3	cervix:	n/a	chr5:27496587-27496600 chr5:27496589-27496598 chr5:27496589-27496600 chr5:27496587-27496600 chr5:27496587-27496598
40	CEBPB	chr5:27652624-27653031	H1-hESC	embryonic stem cell:	n/a	chr5:27652846-27652857
41	CEBPB	chr5:27611406-27611676	IMR90	lung:	n/a	chr5:27611459-27611470 chr5:27611545-27611556
42	CEBPB	chr5:27459716-27459960	A549	lung:	n/a	chr5:27459841-27459854 chr5:27459841-27459852 chr5:27459842-27459853
43	CEBPB	chr5:27556395-27556606	A549	lung:	n/a	chr5:27556450-27556461
44	CEBPB	chr5:27652770-27652866	HepG2	liver:	n/a	chr5:27652846-27652857
45	CEBPB	chr5:27496418-27496770	IMR90	lung:	n/a	chr5:27496587-27496600 chr5:27496589-27496598 chr5:27496589-27496600 chr5:27496587-27496600 chr5:27496587-27496598
46	CEBPB	chr5:27497947-27498299	HepG2	liver:	n/a	chr5:27498130-27498139 chr5:27498130-27498139
47	CEBPB	chr5:27611392-27611700	HepG2	liver:	n/a	chr5:27611459-27611470 chr5:27611545-27611556
48	CEBPB	chr5:27402580-27402860	HepG2	liver:	n/a	chr5:27402684-27402697 chr5:27402755-27402766
49	CEBPB	chr5:27403393-27403602	A549	lung:	n/a	n/a
50	CEBPB	chr5:27510098-27510421	HepG2	liver:	n/a	chr5:27510236-27510247

(count:427 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:27472520-27472570	BJ	skin:	n/a
2	chr5:27472520-27472570	SK-N-MC	brain:	n/a
3	chr5:27472542-27472592	NB4	blood:	n/a
4	chr5:27472029-27472079	HEK293	kidney:	embryo
5	chr5:27472029-27472079	ovcar-3	ovarian:	n/a
6	chr5:27472542-27472592	K562	blood:	n/a
7	chr5:27438836-27438886	HAEpiC	amniotic membrane:	n/a
8	chr5:27472029-27472079	ProgFib	skin:	n/a
9	chr5:27472542-27472592	NHBE	bronchial:	n/a
10	chr5:27523909-27523959	ovcar-3	ovarian:	n/a
11	chr5:27472029-27472079	HRPEpiC	eye:	n/a
12	chr5:27523909-27523959	Jurkat	blood:	n/a
13	chr5:27532684-27532734	HNPCEpiC	eye:	n/a
14	chr5:27532684-27532734	GM12892	blood:	n/a
15	chr5:27438836-27438886	Hela-S3	cervix:	n/a
16	chr5:27472542-27472592	AG04449	skin:	fetal
17	chr5:27532684-27532734	HCM	heart:	n/a
18	chr5:27523909-27523959	HEEpiC	esophagus:	n/a
19	chr5:27523974-27524024	SK-N-SH	brain:	n/a
20	chr5:27472029-27472079	AG04449	skin:	fetal
21	chr5:27472542-27472592	HRCEpiC	kidney:	n/a
22	chr5:27523909-27523959	HIPEpiC	eye:	n/a
23	chr5:27532684-27532734	GM06990	blood:	n/a
24	chr5:27472542-27472592	HPAEpiC	pulmonary alveolar:	n/a
25	chr5:27472520-27472570	HPAEpiC	pulmonary alveolar:	n/a
26	chr5:27472520-27472570	SKMC	muscle:	n/a
27	chr5:27472520-27472570	GM12878	blood:	n/a
28	chr5:27472542-27472592	HUVEC	blood vessel:	n/a
29	chr5:27523974-27524024	HEEpiC	esophagus:	n/a
30	chr5:27472542-27472592	HCT-116	colon:	n/a
31	chr5:27523974-27524024	BJ	skin:	n/a
32	chr5:27472542-27472592	PFSK-1	brain:	n/a
33	chr5:27438836-27438886	NHBE	bronchial:	n/a
34	chr5:27523909-27523959	MCF-7	breast:	n/a
35	chr5:27523974-27524024	Hela-S3	cervix:	n/a
36	chr5:27523974-27524024	GM19239	blood:	n/a
37	chr5:27472029-27472079	AoSMC	blood vessel:	n/a
38	chr5:27472542-27472592	RPTEC	kidney:	n/a
39	chr5:27472029-27472079	HepG2	liver:	n/a
40	chr5:27438836-27438886	HCPEpiC	choroid plexus:	n/a
41	chr5:27472520-27472570	AG04449	skin:	fetal
42	chr5:27472542-27472592	T-47D	breast:	n/a
43	chr5:27523909-27523959	HCF	heart:	n/a
44	chr5:27472520-27472570	HCT-116	colon:	n/a
45	chr5:27523974-27524024	Hepatocyte	liver:	n/a
46	chr5:27523974-27524024	AoSMC	blood vessel:	n/a
47	chr5:27523974-27524024	HUVEC	blood vessel:	n/a
48	chr5:27532684-27532734	CMK	blood:	n/a
49	chr5:27523974-27524024	K562	blood:	n/a
50	chr5:27472520-27472570	HRE	kidney:	n/a

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:27415884..27418944-chr5:27423264..27427119,3	K562	blood:
2	chr5:27619372..27621025-chr5:27624606..27626826,2	K562	blood:
3	chr19:45907739..45908484-chr5:27472364..27473126,2	Hela-S3	cervix:
4	chr5:27410717..27413698-chr5:27423274..27425658,2	K562	blood:
5	chr10:69644380..69644911-chr5:27472591..27473140,2	Hela-S3	cervix:
6	chr5:27467308..27469302-chr5:27473283..27475423,2	K562	blood:
7	chr5:27410717..27413698-chr5:27423274..27425658,2	K562	blood:
8	chr5:27470415..27473388-chr5:27486185..27488435,2	K562	blood:
9	chr5:27466020..27468393-chr5:27470324..27473144,3	K562	blood:
10	chr5:27483953..27485836-chr5:27487380..27490659,3	K562	blood:
11	chr13:92004278..92006382-chr5:27545617..27547117,2	K562	blood:
12	chr5:27465898..27467546-chr5:27470324..27472509,2	K562	blood:
13	chr5:27530537..27533471-chr5:27821180..27823240,2	K562	blood:
14	chr5:27415884..27418944-chr5:27423264..27427119,3	K562	blood:
15	chr5:27441556..27444509-chr5:27447634..27449803,2	K562	blood:
16	chr5:27422999..27425291-chr5:27429898..27432218,2	K562	blood:
17	chr5:27483953..27485836-chr5:27487380..27490659,3	K562	blood:
18	chr5:27483953..27486391-chr5:27488039..27490659,3	K562	blood:
19	chr5:27483622..27485658-chr5:27500054..27501684,2	K562	blood:
20	chr5:27600351..27602569-chr5:27603495..27605126,2	K562	blood:
21	chr5:27606222..27608157-chr5:27609171..27611817,2	MCF-7	breast:
22	chr5:27560772..27563762-chr5:27570947..27572476,2	MCF-7	breast:
23	chr5:27483953..27486391-chr5:27488039..27490659,3	K562	blood:
24	chr5:27600351..27602569-chr5:27603495..27605126,2	K562	blood:
25	chr5:27560772..27563762-chr5:27570947..27572476,2	MCF-7	breast:
26	chr5:27286321..27288328-chr5:27551307..27553852,2	MCF-7	breast:
27	chr5:27483622..27485658-chr5:27500054..27501684,2	K562	blood:
28	chr5:27619372..27621025-chr5:27624606..27626826,2	K562	blood:
29	chr5:27422999..27425291-chr5:27429898..27432218,2	K562	blood:
30	chr5:27467308..27469302-chr5:27473283..27475423,2	K562	blood:
31	chr5:27441556..27444509-chr5:27447634..27449803,2	K562	blood:
32	chr5:27606222..27608157-chr5:27609171..27611817,2	MCF-7	breast:

(count:45 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C5orf17-8	chr5:27475642-27475802	ENSG00000250337
2	lnc-CDH9-2	chr5:27412720-27412796	XLOC_004761
3	lnc-C5orf17-8	chr5:27494226-27494425	ENSG00000250337
4	lnc-CDH9-2	chr5:27406639-27406877	XLOC_004761
5	lnc-C5orf17-8	chr5:27494342-27494425	ENSG00000250337
6	lnc-CDH9-9	chr5:27442394-27442634	l_2893_chr5:27442393-27446144_testes
7	lnc-C5orf17-8	chr5:27475642-27475802	ENSG00000250337
8	lnc-C5orf17-8	chr5:27485033-27485136	ENSG00000250337
9	lnc-CDH9-2	chr5:27406639-27406877	XLOC_004761
10	lnc-CDH9-2	chr5:27409693-27409751	XLOC_004761
11	lnc-CDH9-2	chr5:27428267-27428320	XLOC_004761
12	lnc-C5orf17-8	chr5:27472418-27472626	XLOC_004323
13	lnc-CDH9-2	chr5:27423608-27423708	XLOC_004761
14	lnc-C5orf17-8	chr5:27485033-27487999	XLOC_004323
15	lnc-C5orf17-8	chr5:27494420-27494442	XLOC_004323
16	lnc-C5orf17-9	chr5:27570754-27570955	XLOC_004324
17	lnc-CDH9-2	chr5:27413322-27413758	XLOC_004761
18	lnc-CDH9-2	chr5:27406639-27406877	XLOC_004761
19	lnc-C5orf17-8	chr5:27496056-27496274	XLOC_004323
20	lnc-CDH9-2	chr5:27412713-27412768	XLOC_004761
21	lnc-CDH9-9	chr5:27448470-27448525	l_2893_chr5:27442393-27446144_testes
22	lnc-C5orf17-8	chr5:27476833-27477908	XLOC_004323
23	lnc-CDH9-2	chr5:27436260-27436518	XLOC_004761
24	lnc-C5orf17-8	chr5:27472414-27472626	ENSG00000250337
25	lnc-C5orf17-8	chr5:27475642-27475802	XLOC_004323
26	lnc-CDH9-2	chr5:27406640-27406877	XLOC_004761
27	lnc-C5orf17-13	chr5:27497127-27497768	NONHSAT100808
28	lnc-C5orf17-8	chr5:27477746-27477908	ENSG00000250337
29	lnc-C5orf17-8	chr5:27489389-27489493	ENSG00000250337
30	lnc-C5orf17-8	chr5:27472414-27472626	ENSG00000250337
31	lnc-C5orf17-14	chr5:27511399-27511559	ucscGeneNc_uc003jgv_1
32	lnc-C5orf17-8	chr5:27489389-27489493	ENSG00000250337
33	lnc-C5orf17-14	chr5:27520790-27521692	ucscGeneNc_uc003jgv_1
34	lnc-C5orf17-8	chr5:27475642-27475802	ENSG00000250337
35	lnc-CDH9-9	chr5:27446084-27446144	l_2893_chr5:27442393-27446144_testes
36	lnc-C5orf17-8	chr5:27476194-27477201	XLOC_004323
37	lnc-C5orf17-8	chr5:27472414-27472626	ENSG00000250337
38	lnc-C5orf17-8	chr5:27485033-27485136	ENSG00000250337
39	lnc-CDH9-2	chr5:27410327-27410387	XLOC_004761
40	lnc-C5orf17-9	chr5:27574964-27575000	XLOC_004324
41	lnc-CDH9-2	chr5:27413322-27413758	XLOC_004761
42	lnc-C5orf17-8	chr5:27494342-27494425	ENSG00000250337
43	lnc-C5orf17-14	chr5:27508148-27508383	ucscGeneNc_uc003jgv_1
44	lnc-CDH9-2	chr5:27412775-27412796	XLOC_004761
45	lnc-CDH9-2	chr5:27412713-27412796	XLOC_004761

No data

Variant related genes	Relation type
LINC01021	TF binding region
ENSG00000248490	TF binding region
LINC01021	CpG island
ENSG00000248490	CpG island
ENSG00000250337	chromatin interactions
ENSG00000104881	chromatin interactions
ENSG00000096717	chromatin interactions
SCCPDH	miRNA target sites
BTAF1	miRNA target sites
NUDT12	miRNA target sites
SYNJ1	miRNA target sites
YWHAQ	miRNA target sites
RANBP10	miRNA target sites
SIRT1	miRNA target sites
KRAS	miRNA target sites
TERF2	miRNA target sites
BCL2	miRNA target sites
CKAP5	miRNA target sites
CHEK1	miRNA target sites
PTPN22	miRNA target sites

Extended variants
information (count: 3458 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:3458 , 50 per page) page: 1 2 3 4 5 6 7 ... 70

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs184796541	chr5:27402657-27402658	Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs189482314	chr5:27402660-27402661	Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs540957229	chr5:27402683-27402684	Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs75696581	chr5:27402760-27402761	Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs548105802	chr5:27402792-27402793	Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs559806065	chr5:27402830-27402831	Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs566210918	chr5:27402858-27402859	Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs538618038	chr5:27402919-27402920	Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs536267611	chr5:27402931-27402932	Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs547831049	chr5:27402975-27402976	Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs569778156	chr5:27402976-27402977	Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs181504925	chr5:27402994-27402995	Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs142983424	chr5:27403051-27403052	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs577138341	chr5:27403072-27403073	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs185253753	chr5:27403097-27403098	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs534501993	chr5:27403170-27403171	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs150531212	chr5:27403196-27403197	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs190182987	chr5:27403204-27403205	Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs139537270	chr5:27403214-27403215	Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs181223979	chr5:27403225-27403226	Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs186501917	chr5:27403234-27403235	Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs189591627	chr5:27403250-27403251	Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs558641060	chr5:27403264-27403265	Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs149665217	chr5:27403313-27403314	Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs532759160	chr5:27403337-27403338	Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs115339515	chr5:27403361-27403362	Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs78960114	chr5:27403389-27403390	Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs529536597	chr5:27403408-27403409	Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs542707935	chr5:27403457-27403458	Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs563009351	chr5:27403464-27403465	Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs144417044	chr5:27403471-27403472	Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs180837140	chr5:27403472-27403473	Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs533628254	chr5:27403483-27403484	Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs116666392	chr5:27403513-27403514	Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs551531508	chr5:27403515-27403516	Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs569705563	chr5:27403550-27403551	Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs537024425	chr5:27403571-27403572	Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs552335924	chr5:27403588-27403589	Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs570526511	chr5:27403638-27403639	Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs534838124	chr5:27403662-27403663	Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs186087177	chr5:27403671-27403672	Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs373861097	chr5:27403691-27403692	Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs574684472	chr5:27403705-27403706	Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs535422135	chr5:27403707-27403708	Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs34030385	chr5:27403720-27403721	Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs556831472	chr5:27403776-27403777	Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs148404970	chr5:27403834-27403835	Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs543380786	chr5:27403860-27403861	Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs2446702	chr5:27403934-27403935	Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs369591944	chr5:27403948-27403949	Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Salivary gland tumor	18059337	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Kartagener syndrome	16639409	CNVD
Medulloblastoma	21979893	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Cervical squamous cell carcinoma	21590768	CNVD
Non-small cell lung cancer	20864512	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Multiple myeloma	17550852	CNVD
prenatal diagnosis	22389664	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Cancer	16751803	CNVD
Breast cancer	16608533	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Intellectual disability	22102821	CNVD
Lung cancer	16740712	CNVD
Renal cell carcinoma	18194544	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Non-small cell lung cancer	19010865	CNVD
Glioblastoma multiforme	22286061	CNVD
Compulsive disorder	18923513	CNVD
Epilepsy	18923513	CNVD
Prader-willi syndrome	18923513	CNVD
small cell lung cancer	20016488	CNVD
Ovarian cancer	21720365	CNVD
Lung cancer	18438408	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Esophageal cancer	20955586	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:268 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:27402600-27404200	Active TSS	A549	lung
2	chr5:27403000-27403200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:27403000-27403200	Enhancers	Hela-S3	cervix
4	chr5:27403200-27403800	Active TSS	Hela-S3	cervix
5	chr5:27403200-27404000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:27403400-27403800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:27403400-27403800	Active TSS	Fetal Muscle Leg	muscle
8	chr5:27403400-27404000	Active TSS	HMEC	breast
9	chr5:27403400-27404000	Active TSS	Osteobl	bone
10	chr5:27403400-27404200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:27403600-27404000	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr5:27410400-27411000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:27417800-27418200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr5:27434000-27435200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:27434200-27435200	Enhancers	NHEK	skin
16	chr5:27435000-27435200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:27435000-27435400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:27435000-27435400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr5:27435000-27435600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr5:27435200-27436200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:27436200-27436600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:27436400-27436600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:27436800-27449400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr5:27442800-27443200	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr5:27446600-27449200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr5:27447600-27448400	ZNF genes & repeats	Spleen	Spleen
27	chr5:27450600-27451200	Enhancers	Fetal Heart	heart
28	chr5:27450800-27451000	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr5:27450800-27451200	Enhancers	Rectal Smooth Muscle	rectum
30	chr5:27450800-27451400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:27451000-27451400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr5:27451400-27452000	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr5:27467800-27468400	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr5:27467800-27468600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr5:27468000-27468400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:27468000-27468600	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr5:27468400-27472000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:27468400-27472200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr5:27468600-27470000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr5:27468600-27472000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr5:27470000-27470400	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr5:27470000-27470600	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr5:27470400-27471800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr5:27470600-27471800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr5:27471000-27471800	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr5:27471200-27471600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr5:27471400-27472000	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr5:27471600-27471800	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr5:27471600-27471800	Enhancers	A549	lung
50	chr5:27471600-27472000	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links