Variant report
Variant | nsv881224 |
---|---|
Chromosome Location | chr5:28815962-28927036 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:239)
- CpG islands (count:244)
- Chromatin interactive region (count:32)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr5:28862973-28863184 | HepG2 | liver: | n/a | n/a |
2 | ATF1 | chr5:28922242-28922358 | K562 | blood: | n/a | n/a |
3 | BHLHE40 | chr5:28816335-28816476 | K562 | blood: | n/a | n/a |
4 | CBX3 | chr5:28823373-28823651 | K562 | blood: | n/a | n/a |
5 | CBX3 | chr5:28823321-28823730 | K562 | blood: | n/a | n/a |
6 | CCNT2 | chr5:28816425-28816641 | K562 | blood: | n/a | n/a |
7 | CEBPB | chr5:28914557-28914757 | A549 | lung: | n/a | chr5:28914660-28914673 |
8 | CEBPB | chr5:28862960-28863277 | HepG2 | liver: | n/a | n/a |
9 | CEBPB | chr5:28831210-28831505 | K562 | blood: | n/a | chr5:28831343-28831354 |
10 | CEBPB | chr5:28818648-28818936 | K562 | blood: | n/a | chr5:28818791-28818802 |
11 | CEBPB | chr5:28818678-28818966 | HepG2 | liver: | n/a | chr5:28818791-28818802 |
12 | CEBPB | chr5:28828802-28828896 | A549 | lung: | n/a | n/a |
13 | CEBPB | chr5:28831177-28831503 | A549 | lung: | n/a | chr5:28831343-28831354 |
14 | CEBPB | chr5:28834436-28834676 | HepG2 | liver: | n/a | chr5:28834587-28834598 |
15 | CEBPB | chr5:28831182-28831450 | H1-hESC | embryonic stem cell: | n/a | chr5:28831343-28831354 |
16 | CEBPB | chr5:28896561-28896803 | K562 | blood: | n/a | n/a |
17 | CEBPB | chr5:28834515-28834730 | K562 | blood: | n/a | chr5:28834587-28834598 |
18 | CEBPB | chr5:28831202-28831533 | HepG2 | liver: | n/a | chr5:28831343-28831354 |
19 | CEBPB | chr5:28915431-28915546 | Hela-S3 | cervix: | n/a | chr5:28915458-28915471 chr5:28915458-28915471 |
20 | CEBPB | chr5:28850602-28850862 | K562 | blood: | n/a | n/a |
21 | CTCF | chr5:28897057-28897512 | MCF-7 | breast: | n/a | chr5:28897255-28897273 chr5:28897250-28897271 chr5:28897256-28897272 |
22 | CTCF | chr5:28897380-28897530 | HEEpiC | esophagus: | n/a | n/a |
23 | CTCF | chr5:28897220-28897370 | BE2_C | brain: | n/a | chr5:28897255-28897273 chr5:28897250-28897271 chr5:28897256-28897272 |
24 | CTCF | chr5:28903808-28904068 | GM12878 | blood: | n/a | n/a |
25 | CTCF | chr5:28897180-28897330 | HCPEpiC | choroid plexus: | n/a | chr5:28897255-28897273 chr5:28897250-28897271 chr5:28897256-28897272 |
26 | CTCF | chr5:28903860-28904010 | Hela-S3 | cervix: | n/a | n/a |
27 | CTCF | chr5:28861580-28861730 | MCF-7 | breast: | n/a | n/a |
28 | CTCF | chr5:28897003-28897619 | A549 | lung: | n/a | chr5:28897255-28897273 chr5:28897250-28897271 chr5:28897256-28897272 |
29 | CTCF | chr5:28897148-28897374 | Medullo | brain: | n/a | chr5:28897255-28897273 chr5:28897250-28897271 chr5:28897256-28897272 |
30 | CTCF | chr5:28897280-28897430 | HAc | cerebellar: | n/a | n/a |
31 | CTCF | chr5:28896938-28896973 | K562 | blood: | n/a | n/a |
32 | CTCF | chr5:28897180-28897330 | HBMEC | blood vessel: | n/a | chr5:28897255-28897273 chr5:28897250-28897271 chr5:28897256-28897272 |
33 | CTCF | chr5:28903842-28904069 | Medullo | brain: | n/a | n/a |
34 | CTCF | chr5:28821150-28821198 | GM20000 | blood: | n/a | n/a |
35 | CTCF | chr5:28897260-28897410 | HA-sp | spinal cord: | n/a | n/a |
36 | CTCF | chr5:28903787-28904107 | MCF-7 | breast: | n/a | n/a |
37 | CTCF | chr5:28903904-28903995 | LNCaP | prostate: | n/a | n/a |
38 | CTCF | chr5:28897080-28897230 | RPTEC | kidney: | n/a | n/a |
39 | CTCF | chr5:28903920-28903983 | Pancreas_OC | pancreas: | n/a | n/a |
40 | CTCF | chr5:28883480-28883630 | GM12867 | blood: | n/a | n/a |
41 | CTCF | chr5:28816580-28816730 | Caco-2 | colon: | n/a | n/a |
42 | CTCF | chr5:28897160-28897310 | HRPEpiC | eye: | n/a | chr5:28897255-28897273 chr5:28897250-28897271 chr5:28897256-28897272 |
43 | CTCF | chr5:28830860-28831010 | HUVEC | blood vessel: | n/a | n/a |
44 | CTCF | chr5:28897120-28897270 | HRE | kidney: | n/a | n/a |
45 | CTCF | chr5:28897140-28897290 | HMEC | breast: | n/a | chr5:28897255-28897273 chr5:28897250-28897271 chr5:28897256-28897272 |
46 | CTCF | chr5:28903880-28903989 | LNCaP | prostate: | n/a | n/a |
47 | CTCF | chr5:28897140-28897290 | HepG2 | liver: | n/a | chr5:28897255-28897273 chr5:28897250-28897271 chr5:28897256-28897272 |
48 | CTCF | chr5:28897220-28897370 | HCPEpiC | choroid plexus: | n/a | chr5:28897255-28897273 chr5:28897250-28897271 chr5:28897256-28897272 |
49 | CTCF | chr5:28897100-28897250 | MCF-7 | breast: | n/a | n/a |
50 | CTCF | chr5:28897195-28897367 | LNCaP | prostate: | n/a | chr5:28897255-28897273 chr5:28897250-28897271 chr5:28897256-28897272 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:28926868-28926918 | HIPEpiC | eye: | n/a |
2 | chr5:28926682-28926732 | MCF-7 | breast: | n/a |
3 | chr5:28926477-28926527 | NT2-D1 | testis: | n/a |
4 | chr5:28926477-28926527 | ECC-1 | luminal epithelium: | n/a |
5 | chr5:28926868-28926918 | ECC-1 | luminal epithelium: | n/a |
6 | chr5:28926477-28926527 | HNPCEpiC | eye: | n/a |
7 | chr5:28926868-28926918 | SK-N-SH | brain: | n/a |
8 | chr5:28926868-28926918 | HEK293 | kidney: | embryo |
9 | chr5:28926837-28926887 | GM06990 | blood: | n/a |
10 | chr5:28926868-28926918 | A549 | lung: | n/a |
11 | chr5:28926837-28926887 | NH-A | brain: | n/a |
12 | chr5:28926477-28926527 | U87 | brain: | n/a |
13 | chr5:28926868-28926918 | HEEpiC | esophagus: | n/a |
14 | chr5:28926837-28926887 | GM19239 | blood: | n/a |
15 | chr5:28926868-28926918 | NHBE | bronchial: | n/a |
16 | chr5:28926837-28926887 | GM12891 | blood: | n/a |
17 | chr5:28926477-28926527 | ProgFib | skin: | n/a |
18 | chr5:28926477-28926527 | A549 | lung: | n/a |
19 | chr5:28926682-28926732 | U87 | brain: | n/a |
20 | chr5:28926837-28926887 | NB4 | blood: | n/a |
21 | chr5:28926868-28926918 | HRPEpiC | eye: | n/a |
22 | chr5:28926837-28926887 | SK-N-MC | brain: | n/a |
23 | chr5:28926868-28926918 | CMK | blood: | n/a |
24 | chr5:28926837-28926887 | Hepatocyte | liver: | n/a |
25 | chr5:28926868-28926918 | SK-N-MC | brain: | n/a |
26 | chr5:28926477-28926527 | PANC-1 | pancreas: | n/a |
27 | chr5:28926682-28926732 | GM06990 | blood: | n/a |
28 | chr5:28926682-28926732 | K562 | blood: | n/a |
29 | chr5:28926682-28926732 | SKMC | muscle: | n/a |
30 | chr5:28926477-28926527 | HAEpiC | amniotic membrane: | n/a |
31 | chr5:28926477-28926527 | AG09309 | skin: | n/a |
32 | chr5:28926477-28926527 | BJ | skin: | n/a |
33 | chr5:28926837-28926887 | PFSK-1 | brain: | n/a |
34 | chr5:28926868-28926918 | LNCaP | prostate: | n/a |
35 | chr5:28926868-28926918 | NH-A | brain: | n/a |
36 | chr5:28926868-28926918 | BJ | skin: | n/a |
37 | chr5:28926477-28926527 | NB4 | blood: | n/a |
38 | chr5:28926682-28926732 | GM19239 | blood: | n/a |
39 | chr5:28926682-28926732 | HL-60 | blood: | n/a |
40 | chr5:28926477-28926527 | GM06990 | blood: | n/a |
41 | chr5:28926868-28926918 | HAEpiC | amniotic membrane: | n/a |
42 | chr5:28926477-28926527 | PFSK-1 | brain: | n/a |
43 | chr5:28926837-28926887 | AG09319 | gingival: | n/a |
44 | chr5:28926868-28926918 | Hepatocyte | liver: | n/a |
45 | chr5:28926868-28926918 | AG09309 | skin: | n/a |
46 | chr5:28926682-28926732 | ovcar-3 | ovarian: | n/a |
47 | chr5:28926868-28926918 | HUVEC | blood vessel: | n/a |
48 | chr5:28926868-28926918 | GM19239 | blood: | n/a |
49 | chr5:28926837-28926887 | HRE | kidney: | n/a |
50 | chr5:28926868-28926918 | HCF | heart: | n/a |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:28848991..28851784-chr5:28856691..28858212,2 | K562 | blood: | |
2 | chr5:28827388..28830378-chr5:28832041..28834686,2 | K562 | blood: | |
3 | chr5:28826049..28828145-chr5:28828270..28829851,2 | K562 | blood: | |
4 | chr5:28903483..28905347-chr5:28915457..28917454,2 | K562 | blood: | |
5 | chr5:28882757..28885638-chr5:28890766..28893255,2 | K562 | blood: | |
6 | chr5:28823907..28826639-chr5:28834141..28835828,2 | K562 | blood: | |
7 | chr5:28826049..28828145-chr5:28828270..28829851,2 | K562 | blood: | |
8 | chr5:28806282..28808048-chr5:28853726..28856182,2 | K562 | blood: | |
9 | chr5:28808032..28811102-chr5:28813971..28817710,5 | K562 | blood: | |
10 | chr5:28827388..28830378-chr5:28832041..28834686,2 | K562 | blood: | |
11 | chr5:28898397..28901228-chr5:28905919..28907829,2 | K562 | blood: | |
12 | chr5:28906947..28909506-chr5:29049292..29051622,2 | K562 | blood: | |
13 | chr5:28808352..28811830-chr5:28882168..28885526,3 | K562 | blood: | |
14 | chr5:28898397..28901228-chr5:28905919..28907829,2 | K562 | blood: | |
15 | chr5:28779022..28779987-chr5:28896759..28897898,5 | MCF-7 | breast: | |
16 | chr5:28914551..28916336-chr5:28918425..28920411,2 | MCF-7 | breast: | |
17 | chr5:28914551..28916336-chr5:28918425..28920411,2 | MCF-7 | breast: | |
18 | chr5:28816134..28818756-chr5:28819776..28822041,3 | K562 | blood: | |
19 | chr5:28892844..28895321-chr5:28897758..28899346,2 | K562 | blood: | |
20 | chr5:28903483..28905347-chr5:28915457..28917454,2 | K562 | blood: | |
21 | chr5:28910494..28912517-chr5:28913196..28915967,2 | MCF-7 | breast: | |
22 | chr5:28848991..28851784-chr5:28856691..28858212,2 | K562 | blood: | |
23 | chr5:28811938..28814493-chr5:28819966..28823203,3 | K562 | blood: | |
24 | chr5:28878210..28880658-chr5:28883353..28885115,2 | K562 | blood: | |
25 | chr5:28823907..28826639-chr5:28834141..28835828,2 | K562 | blood: | |
26 | chr5:28851055..28851753-chr7:86185395..86186230,2 | MCF-7 | breast: | |
27 | chr5:28816134..28818756-chr5:28819776..28822041,3 | K562 | blood: | |
28 | chr5:28836092..28838497-chr5:28839805..28842751,2 | MCF-7 | breast: | |
29 | chr5:28882757..28885638-chr5:28890766..28893255,2 | K562 | blood: | |
30 | chr5:28910494..28912517-chr5:28913196..28915967,2 | MCF-7 | breast: | |
31 | chr5:28878210..28880658-chr5:28883353..28885115,2 | K562 | blood: | |
32 | chr5:28836092..28838497-chr5:28839805..28842751,2 | MCF-7 | breast: |
(count:2 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-CDH9-12 | chr5:28897892-28898381 | NONHSAT100823 |
2 | lnc-CDH6-15 | chr5:28900872-28902541 | NONHSAT100824 |
No data |
No data |
Variant related genes | Relation type |
---|---|
LSP1P3 | TF binding region |
ENSG00000271035 | TF binding region |
ENSG00000226400 | TF binding region |
LSP1P3 | CpG island |
ENSG00000271035 | CpG island |
ENSG00000226400 | CpG island |
ENSG00000250453 | chromatin interactions |
ENSG00000271035 | chromatin interactions |
ENSG00000270495 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs16898178 | chr5:28815962-28815963 | Weak transcription | Chromatin interactive region | 2 gene(s) | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
2 | rs572612669 | chr5:28815969-28815970 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
3 | rs559473575 | chr5:28815971-28815972 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
4 | rs189723359 | chr5:28816077-28816078 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
5 | rs73749818 | chr5:28816090-28816091 | Weak transcription | Chromatin interactive region | 2 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
6 | rs563410495 | chr5:28816098-28816099 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
7 | rs16898181 | chr5:28816108-28816109 | Weak transcription | Chromatin interactive region | 2 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
8 | rs181326335 | chr5:28816109-28816110 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
9 | rs565293936 | chr5:28816128-28816129 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
10 | rs76907973 | chr5:28816168-28816169 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
11 | rs186014474 | chr5:28816177-28816178 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
12 | rs559274916 | chr5:28816208-28816209 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
13 | rs199633075 | chr5:28816309-28816310 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
14 | rs530386623 | chr5:28816322-28816323 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
15 | rs548168341 | chr5:28816359-28816360 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
16 | rs569969243 | chr5:28816363-28816364 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
17 | rs530731231 | chr5:28816404-28816405 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
18 | rs551729259 | chr5:28816408-28816409 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
19 | rs570119528 | chr5:28816424-28816425 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
20 | rs147948939 | chr5:28816499-28816500 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
21 | rs553069748 | chr5:28816542-28816543 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
22 | rs565383596 | chr5:28816550-28816551 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
23 | rs536876482 | chr5:28816575-28816576 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
24 | rs554947260 | chr5:28816604-28816605 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
25 | rs141766390 | chr5:28816630-28816631 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
26 | rs141374189 | chr5:28816694-28816695 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
27 | rs113287718 | chr5:28816695-28816696 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
28 | rs544147695 | chr5:28816726-28816727 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
29 | rs558945878 | chr5:28816732-28816733 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
30 | rs577318725 | chr5:28816745-28816746 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
31 | rs541164665 | chr5:28816751-28816752 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
32 | rs558952077 | chr5:28816758-28816759 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
33 | rs189954761 | chr5:28816800-28816801 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
34 | rs529835772 | chr5:28816833-28816834 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
35 | rs542711496 | chr5:28816863-28816864 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
36 | rs541974420 | chr5:28816870-28816871 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
37 | rs563166602 | chr5:28816893-28816894 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
38 | rs578003020 | chr5:28816902-28816903 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
39 | rs530672343 | chr5:28816938-28816939 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
40 | rs35165783 | chr5:28816987-28816988 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
41 | rs540507300 | chr5:28817065-28817066 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
42 | rs147077229 | chr5:28817102-28817103 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
43 | rs16898182 | chr5:28817115-28817116 | Inactive region | Chromatin interactive region | 2 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
44 | rs528120362 | chr5:28817122-28817123 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
45 | rs111269893 | chr5:28817139-28817140 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
46 | rs550986483 | chr5:28817146-28817147 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
47 | rs188894277 | chr5:28817159-28817160 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
48 | rs568180022 | chr5:28817178-28817179 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
49 | rs535210780 | chr5:28817220-28817221 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
50 | rs555115709 | chr5:28817230-28817231 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Salivary gland tumor | 18059337 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Kartagener syndrome | 16639409 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Myofibroblastic sarcoma | 19369631 | CNVD |
Cervical squamous cell carcinoma | 21590768 | CNVD |
Non-small cell lung cancer | 20864512 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Liposarcoma | 21253554 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Cervical Cancer | 21857958 | CNVD |
Cervical cancer | 21062161 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Oral cancer | 21386901 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Cervical cancer | 18559093 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Malaria | 21533027 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Colorectal cancer | 21645411 | CNVD |
Gastric cancer | 22152101 | CNVD |
Oesophago-gastric ulcer | 22152101 | CNVD |
Ovarian cancer | 21781307 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Cancer | 20164919 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Multiple myeloma | 17550852 | CNVD |
prenatal diagnosis | 22389664 | CNVD |
Bladder cancer | 21909424 | CNVD |
DNA damage stimulus | 22844521 | CNVD |
DNA repair | 22844521 | CNVD |
Breast cancer | 21785460 | CNVD |
Spinal muscular atrophy | 22422766 | CNVD |
Spinal muscular atrophy | 22558076 | CNVD |
Spinal muscular atrophy | 21320981 | CNVD |
Spinal muscular atrophy | 21762474 | CNVD |
Breast cancer | 21858162 | CNVD |
Esophageal adenocarcinoma | 19417022 | CNVD |
Cancer | 16751803 | CNVD |
Breast cancer | 16608533 | CNVD |
Autism | 22495311 | CNVD |
Melanoma | 18172304 | CNVD |
Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
Intellectual disability | 22102821 | CNVD |
Lung cancer | 16740712 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
Prostate cancer | 21965145 | CNVD |
Cancer | 21183584 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Breast cancer | 17603634 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Non-small cell lung cancer | 19010865 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Compulsive disorder | 18923513 | CNVD |
Epilepsy | 18923513 | CNVD |
Prader-willi syndrome | 18923513 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Lung cancer | 18438408 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Glioma | 20126413 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Breast cancer | 22032731 | CNVD |
Esophageal cancer | 20955586 | CNVD |
Prostate cancer | 18632612 | CNVD |
Breast cancer | 21364760 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Schizophrenia | 23813976 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Breast cancer | 20409316 | CNVD |
Medulloblastoma | 19270706 | CNVD |
Breast cancer | 19553991 | CNVD |
Lung cancer | 19553991 | CNVD |
Melanoma | 19553991 | CNVD |
Ovarian cancer | 19553991 | CNVD |
Prostate cancer | 19553991 | CNVD |
Non-small cell lung cancer | 17156491 | CNVD |
Breast cancer | 17133270 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:28813200-28816600 | Weak transcription | K562 | blood |
2 | chr5:28822200-28822800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
3 | chr5:28823200-28823800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
4 | chr5:28825600-28827000 | Enhancers | Fetal Heart | heart |
5 | chr5:28857600-28859800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
6 | chr5:28859800-28860000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
7 | chr5:28860000-28861600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
8 | chr5:28861400-28862600 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
9 | chr5:28861600-28862000 | Flanking Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
10 | chr5:28862000-28862400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
11 | chr5:28862200-28863000 | Enhancers | HepG2 | liver |
12 | chr5:28862400-28863600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
13 | chr5:28863600-28864200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
14 | chr5:28876800-28877400 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
15 | chr5:28884200-28889600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
16 | chr5:28897400-28898600 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
17 | chr5:28913400-28914800 | Enhancers | HUES48 Cell Line | embryonic stem cell |
18 | chr5:28913600-28914800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
19 | chr5:28914200-28914600 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
20 | chr5:28927000-28929200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |