Variant report

Variant	nsv881277
Chromosome Location	chr5:17434249-17469290
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:190)
CpG islands
(count:122)
Chromatin interactive
region (count:11)
LncRNA
region (count:23)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:190 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF3	chr5:17443879-17444164	K562	blood:	n/a	n/a
2	BACH1	chr5:17434247-17434354	K562	blood:	n/a	n/a
3	BCLAF1	chr5:17436516-17437140	GM12878	blood:	n/a	n/a
4	BHLHE40	chr5:17456049-17456242	GM12878	blood:	n/a	n/a
5	CEBPB	chr5:17449019-17449300	K562	blood:	n/a	chr5:17449175-17449186
6	CEBPB	chr5:17435153-17435304	HepG2	liver:	n/a	n/a
7	CEBPB	chr5:17445308-17445697	MCF-7	breast:	n/a	n/a
8	CEBPB	chr5:17443973-17444164	K562	blood:	n/a	n/a
9	CEBPB	chr5:17444051-17444276	K562	blood:	n/a	n/a
10	CEBPB	chr5:17449006-17449365	IMR90	lung:	n/a	chr5:17449175-17449186
11	CEBPB	chr5:17443942-17444214	A549	lung:	n/a	n/a
12	CEBPB	chr5:17449024-17449337	HepG2	liver:	n/a	chr5:17449175-17449186
13	CEBPB	chr5:17448970-17449405	A549	lung:	n/a	chr5:17449175-17449186
14	CEBPB	chr5:17443930-17444116	HepG2	liver:	n/a	n/a
15	CEBPB	chr5:17449051-17449354	A549	lung:	n/a	chr5:17449175-17449186
16	CEBPB	chr5:17449048-17449320	Hela-S3	cervix:	n/a	chr5:17449175-17449186
17	CEBPB	chr5:17435132-17435251	A549	lung:	n/a	n/a
18	CEBPB	chr5:17444001-17444214	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr5:17468400-17468550	HMF	breast:	n/a	n/a
20	CTCF	chr5:17468405-17468580	GM19239	blood:	n/a	n/a
21	CTCF	chr5:17443500-17443650	GM12865	blood:	n/a	n/a
22	CTCF	chr5:17468445-17468539	GM19240	blood:	n/a	n/a
23	CTCF	chr5:17468453-17468523	GM10266	blood:	n/a	n/a
24	CTCF	chr5:17468400-17468550	Caco-2	colon:	n/a	n/a
25	CTCF	chr5:17468460-17468610	GM12878	blood:	n/a	n/a
26	CTCF	chr5:17468447-17468560	NHEK	skin:	n/a	n/a
27	CTCF	chr5:17438300-17438372	H1-hESC	embryonic stem cell:	n/a	chr5:17438327-17438348
28	CTCF	chr5:17443930-17444182	K562	blood:	n/a	n/a
29	CTCF	chr5:17443940-17444090	NB4	blood:	n/a	n/a
30	CTCF	chr5:17443602-17443683	K562	blood:	n/a	n/a
31	CTCF	chr5:17455504-17455521	K562	blood:	n/a	n/a
32	CTCF	chr5:17468420-17468570	AG09309	skin:	n/a	n/a
33	CTCF	chr5:17468460-17468610	MCF-7	breast:	n/a	n/a
34	CTCF	chr5:17443961-17444114	H1-hESC	embryonic stem cell:	n/a	n/a
35	CTCF	chr5:17468420-17468570	HCPEpiC	choroid plexus:	n/a	n/a
36	CTCF	chr5:17468421-17468553	K562	blood:	n/a	n/a
37	CTCF	chr5:17438264-17438411	MCF-7	breast:	n/a	chr5:17438327-17438348
38	CTCF	chr5:17443449-17443766	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr5:17468420-17468570	A549	lung:	n/a	n/a
40	CTCF	chr5:17443787-17443839	LNCaP	prostate:	n/a	n/a
41	CTCF	chr5:17468380-17468610	GM12865	blood:	n/a	n/a
42	CTCF	chr5:17456220-17456370	HBMEC	blood vessel:	n/a	n/a
43	CTCF	chr5:17451566-17451641	GM10248	blood:	n/a	n/a
44	CTCF	chr5:17443541-17443695	K562	blood:	n/a	n/a
45	CTCF	chr5:17444014-17444090	Gliobla	brain:	n/a	n/a
46	CTCF	chr5:17468469-17468528	MCF-7	breast:	n/a	n/a
47	CTCF	chr5:17468520-17468670	AG04449	skin:	n/a	n/a
48	CTCF	chr5:17468420-17468570	AG09319	gingival:	n/a	n/a
49	CTCF	chr5:17456692-17456725	Fibrobl	skin:	n/a	n/a
50	CTCF	chr5:17438160-17438425	H1-hESC	embryonic stem cell:	n/a	chr5:17438327-17438348

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:17444401-17444451	Jurkat	blood:	n/a
2	chr5:17444401-17444451	U87	brain:	n/a
3	chr5:17444401-17444451	HNPCEpiC	eye:	n/a
4	chr5:17436715-17436765	PrEC	prostate:	n/a
5	chr5:17444401-17444451	HRCEpiC	kidney:	n/a
6	chr5:17444401-17444451	MCF-7	breast:	n/a
7	chr5:17436715-17436765	ProgFib	skin:	n/a
8	chr5:17436715-17436765	AG09319	gingival:	n/a
9	chr5:17444401-17444451	NHBE	bronchial:	n/a
10	chr5:17436715-17436765	HIPEpiC	eye:	n/a
11	chr5:17436715-17436765	AG04449	skin:	fetal
12	chr5:17444401-17444451	K562	blood:	n/a
13	chr5:17444401-17444451	HAEpiC	amniotic membrane:	n/a
14	chr5:17436715-17436765	HEEpiC	esophagus:	n/a
15	chr5:17436715-17436765	GM12892	blood:	n/a
16	chr5:17444401-17444451	Hela-S3	cervix:	n/a
17	chr5:17436715-17436765	HL-60	blood:	n/a
18	chr5:17436715-17436765	U87	brain:	n/a
19	chr5:17444401-17444451	ECC-1	luminal epithelium:	n/a
20	chr5:17444401-17444451	ProgFib	skin:	n/a
21	chr5:17436715-17436765	HCM	heart:	n/a
22	chr5:17444401-17444451	BE2_C	brain:	n/a
23	chr5:17444401-17444451	HEEpiC	esophagus:	n/a
24	chr5:17436715-17436765	GM12891	blood:	n/a
25	chr5:17444401-17444451	GM12891	blood:	n/a
26	chr5:17436715-17436765	T-47D	breast:	n/a
27	chr5:17436715-17436765	PFSK-1	brain:	n/a
28	chr5:17436715-17436765	NHBE	bronchial:	n/a
29	chr5:17444401-17444451	GM12892	blood:	n/a
30	chr5:17444401-17444451	RPTEC	kidney:	n/a
31	chr5:17444401-17444451	HCM	heart:	n/a
32	chr5:17436715-17436765	PANC-1	pancreas:	n/a
33	chr5:17436715-17436765	Hela-S3	cervix:	n/a
34	chr5:17436715-17436765	SK-N-MC	brain:	n/a
35	chr5:17444401-17444451	IMR90	lung:	fetal
36	chr5:17444401-17444451	SK-N-MC	brain:	n/a
37	chr5:17436715-17436765	HUVEC	blood vessel:	n/a
38	chr5:17436715-17436765	SK-N-SH	brain:	n/a
39	chr5:17436715-17436765	HRE	kidney:	n/a
40	chr5:17436715-17436765	K562	blood:	n/a
41	chr5:17444401-17444451	SK-N-SH	brain:	n/a
42	chr5:17436715-17436765	HMEC	breast:	n/a
43	chr5:17436715-17436765	HRPEpiC	eye:	n/a
44	chr5:17436715-17436765	HCPEpiC	choroid plexus:	n/a
45	chr5:17444401-17444451	Hepatocyte	liver:	n/a
46	chr5:17444401-17444451	HPAEpiC	pulmonary alveolar:	n/a
47	chr5:17436715-17436765	HEK293	kidney:	embryo
48	chr5:17436715-17436765	HPAEpiC	pulmonary alveolar:	n/a
49	chr5:17436715-17436765	BJ	skin:	n/a
50	chr5:17444401-17444451	AG09309	skin:	n/a

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:17445953..17448807-chr5:17455324..17457089,2	K562	blood:
2	chr5:17216689..17219268-chr5:17450632..17453590,2	MCF-7	breast:
3	chr5:17446833..17449235-chr5:17452939..17454886,2	MCF-7	breast:
4	chr5:17445129..17446748-chr5:17447906..17450127,2	MCF-7	breast:
5	chr5:17444658..17447223-chr5:17452681..17454773,2	MCF-7	breast:
6	chr5:17444658..17447223-chr5:17452681..17454773,2	MCF-7	breast:
7	chr5:17448288..17450803-chr5:17469886..17472287,2	K562	blood:
8	chr5:17445953..17448807-chr5:17455324..17457089,2	K562	blood:
9	chr5:17446833..17449235-chr5:17452939..17454886,2	MCF-7	breast:
10	chr5:17445129..17446748-chr5:17447906..17450127,2	MCF-7	breast:
11	chr5:17463203..17464706-chr5:17470171..17472480,2	MCF-7	breast:

(count:23 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BASP1-4	chr5:17444119-17444343	XLOC_004309
2	lnc-MYO10-8	chr5:17437952-17438549	ucscGeneNc_uc003jga_2
3	lnc-BASP1-3	chr5:17440222-17440293	NONHSAT100641
4	lnc-BASP1-3	chr5:17436845-17437322	NONHSAT100641
5	lnc-BASP1-3	chr5:17436846-17437322	XLOC_004308
6	lnc-BASP1-11	chr5:17456970-17457429	l_2885_chr5:17456969-17494846_brain
7	lnc-BASP1-4	chr5:17445736-17446039	XLOC_004309
8	lnc-MYO10-8	chr5:17440311-17440416	ucscGeneNc_uc003jga_2
9	lnc-BASP1-11	chr5:17465001-17465207	l_2885_chr5:17456969-17494846_brain
10	lnc-BASP1-4	chr5:17444119-17444343	XLOC_004309
11	lnc-BASP1-3	chr5:17441578-17442654	XLOC_004308
12	lnc-BASP1-3	chr5:17441578-17441787	XLOC_004308
13	lnc-BASP1-3	chr5:17441578-17441787	XLOC_004308
14	lnc-BASP1-3	chr5:17441577-17441809	NONHSAT100641
15	lnc-BASP1-3	chr5:17441578-17441803	XLOC_004308
16	lnc-BASP1-3	chr5:17441578-17441846	XLOC_004308
17	lnc-BASP1-3	chr5:17441578-17441826	NONHSAT100634
18	lnc-BASP1-3	chr5:17441578-17441787	XLOC_004308
19	lnc-BASP1-3	chr5:17441578-17441809	XLOC_004308
20	lnc-BASP1-3	chr5:17437289-17437322	XLOC_004308
21	lnc-BASP1-11	chr5:17457474-17457838	l_2885_chr5:17456969-17494846_brain
22	lnc-BASP1-3	chr5:17440223-17440293	XLOC_004308
23	lnc-BASP1-3	chr5:17441578-17442297	XLOC_004308

No data

Variant related genes	Relation type
ENSG00000248455	TF binding region
ENSG00000249662	TF binding region
ENSG00000248455	CpG island
ENSG00000249662	CpG island
ENSG00000176788	chromatin interactions
ENSG00000215196	chromatin interactions
RAE1	miRNA target sites
RNF41	miRNA target sites
PRKCE	miRNA target sites

Extended variants
information (count: 1202 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:1202 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2459791	chr5:17434249-17434250	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs530049946	chr5:17434251-17434252	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs546993836	chr5:17434344-17434345	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs2459790	chr5:17434402-17434403	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs113554320	chr5:17434491-17434492	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs570931908	chr5:17434526-17434527	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs4702214	chr5:17434537-17434538	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs147188902	chr5:17434556-17434557	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs140420179	chr5:17434570-17434571	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs142100270	chr5:17434596-17434597	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs181204661	chr5:17434606-17434607	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs71611036	chr5:17434609-17434610	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs554067726	chr5:17434708-17434709	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs112952975	chr5:17434726-17434727	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs187162749	chr5:17434777-17434778	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs375472663	chr5:17434787-17434788	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs145776165	chr5:17434798-17434799	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs377745869	chr5:17434799-17434800	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs70943901	chr5:17434825-17434826	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs61381875	chr5:17434828-17434829	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs568452043	chr5:17434858-17434859	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs7724455	chr5:17434860-17434861	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs550892609	chr5:17434869-17434870	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs533627255	chr5:17434874-17434875	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs111575293	chr5:17434908-17434909	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs561164263	chr5:17434918-17434919	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs529936854	chr5:17434928-17434929	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs546882665	chr5:17434930-17434931	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs566779178	chr5:17434931-17434932	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs28449952	chr5:17434932-17434933	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs2459845	chr5:17434934-17434935	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs56695686	chr5:17434936-17434937	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs55967554	chr5:17434938-17434939	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs200119356	chr5:17434945-17434946	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs555135735	chr5:17434948-17434949	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs148988065	chr5:17434950-17434951	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs148530229	chr5:17434951-17434952	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs79904752	chr5:17434954-17434955	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs138995938	chr5:17434968-17434969	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs554977958	chr5:17434972-17434973	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs186277209	chr5:17434987-17434988	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs552019958	chr5:17435029-17435030	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs55874509	chr5:17435041-17435042	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs76380564	chr5:17435087-17435088	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs554004196	chr5:17435179-17435180	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs56360705	chr5:17435254-17435255	Weak transcription Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs190791786	chr5:17435258-17435259	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs182246556	chr5:17435259-17435260	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs185879833	chr5:17435262-17435263	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs191527617	chr5:17435276-17435277	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Lung cancer	19547694	CNVD
Cri-du chat syndrome	22283845	CNVD
Disorders of sex development	21048976	CNVD
Non-small cell lung cancer	20864512	CNVD
Cancer	21183584	CNVD
Cervical squamous cell carcinoma	21590768	CNVD
Honadal dysgenesis	21048976	CNVD
Cancer	16751803	CNVD
Breast cancer	17133270	CNVD
Hepatocellular carcinoma	22174799	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Salivary gland tumor	18059337	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Kartagener syndrome	16639409	CNVD
Medulloblastoma	21979893	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Multiple myeloma	17550852	CNVD
prenatal diagnosis	22389664	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Esophageal adenocarcinoma	19417022	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	16608533	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Intellectual disability	22102821	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Williams Syndrome	20824207	CNVD
Breast cancer	21364760	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Myoepithelioma	18604193	CNVD
Lung cancer	16740712	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Melanoma	22183965	CNVD
Renal cell carcinoma	18194544	CNVD
Prostate cancer	21965145	CNVD
Ovarian cancer	20844748	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Autism	19287141	CNVD

Chromatin state (count:178 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17426600-17435200	Weak transcription	Primary B cells from cord blood	blood
2	chr5:17430800-17463800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:17431000-17435400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:17432000-17435400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr5:17432400-17435400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:17432400-17436000	Weak transcription	Placenta	Placenta
7	chr5:17432600-17435400	Weak transcription	GM12878-XiMat	blood
8	chr5:17433000-17434400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:17433200-17434400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:17433200-17434600	Enhancers	Ovary	ovary
11	chr5:17434200-17434400	Enhancers	Rectal Smooth Muscle	rectum
12	chr5:17434400-17434600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:17434400-17436000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr5:17434400-17436400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:17434600-17436800	Weak transcription	Ovary	ovary
16	chr5:17435000-17436200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:17435200-17436000	Enhancers	Primary B cells from cord blood	blood
18	chr5:17435400-17436000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr5:17435400-17436400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr5:17435400-17436600	Enhancers	GM12878-XiMat	blood
21	chr5:17435400-17439000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr5:17435600-17436200	Enhancers	Primary hematopoietic stem cells	blood
23	chr5:17435800-17436000	Weak transcription	Spleen	Spleen
24	chr5:17435800-17436200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:17435800-17436400	Enhancers	Adipose Nuclei	Adipose
26	chr5:17435800-17436600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:17436000-17436200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr5:17436000-17436200	Enhancers	Aorta	Aorta
29	chr5:17436000-17436200	Enhancers	Duodenum Mucosa	Duodenum
30	chr5:17436000-17436200	Enhancers	Rectal Smooth Muscle	rectum
31	chr5:17436000-17436400	Enhancers	Placenta	Placenta
32	chr5:17436000-17436400	Enhancers	Spleen	Spleen
33	chr5:17436000-17436600	Enhancers	Primary B cells from peripheral blood	blood
34	chr5:17436000-17436600	Enhancers	Fetal Kidney	kidney
35	chr5:17436000-17436600	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr5:17436000-17437400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr5:17436000-17437400	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr5:17436000-17437600	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr5:17436000-17437800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr5:17436200-17436400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr5:17436200-17436400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:17436200-17436400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr5:17436200-17436600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:17436200-17436600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
45	chr5:17436200-17436600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr5:17436200-17436600	Enhancers	Osteobl	bone
47	chr5:17436200-17436800	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr5:17436200-17436800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr5:17436200-17436800	Enhancers	Liver	Liver
50	chr5:17436200-17437600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links