Variant report

Variant	nsv881494
Chromosome Location	chr5:28498983-28646417
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr5:28633929-28634173	K562	blood:	n/a	n/a
2	ATF1	chr5:28629799-28629979	K562	blood:	n/a	n/a
3	BHLHE40	chr5:28544753-28544953	GM12878	blood:	n/a	n/a
4	BHLHE40	chr5:28543913-28544119	GM12878	blood:	n/a	n/a
5	BHLHE40	chr5:28636212-28636238	GM12878	blood:	n/a	n/a
6	BRCA1	chr5:28542971-28543463	Hela-S3	cervix:	n/a	n/a
7	CCNT2	chr5:28585631-28585761	K562	blood:	n/a	n/a
8	CEBPB	chr5:28583068-28583086	K562	blood:	n/a	n/a
9	CEBPB	chr5:28635207-28635437	K562	blood:	n/a	chr5:28635327-28635338 chr5:28635327-28635340 chr5:28635327-28635340 chr5:28635329-28635340 chr5:28635329-28635338
10	CEBPB	chr5:28512802-28513105	A549	lung:	n/a	chr5:28512922-28512931 chr5:28512922-28512933 chr5:28512920-28512931 chr5:28512920-28512933
11	CEBPB	chr5:28532136-28532342	A549	lung:	n/a	n/a
12	CEBPB	chr5:28585069-28585342	HepG2	liver:	n/a	chr5:28585203-28585214 chr5:28585136-28585147
13	CEBPB	chr5:28635196-28635424	Hela-S3	cervix:	n/a	chr5:28635327-28635338 chr5:28635327-28635340 chr5:28635327-28635340 chr5:28635329-28635340 chr5:28635329-28635338
14	CEBPB	chr5:28512886-28512991	K562	blood:	n/a	chr5:28512922-28512931 chr5:28512922-28512933 chr5:28512920-28512931 chr5:28512920-28512933
15	CEBPB	chr5:28635154-28635436	A549	lung:	n/a	chr5:28635327-28635338 chr5:28635327-28635340 chr5:28635327-28635340 chr5:28635329-28635340 chr5:28635329-28635338
16	CEBPB	chr5:28635155-28635484	HepG2	liver:	n/a	chr5:28635327-28635338 chr5:28635327-28635340 chr5:28635327-28635340 chr5:28635329-28635340 chr5:28635329-28635338
17	CEBPB	chr5:28538301-28538501	K562	blood:	n/a	chr5:28538404-28538415 chr5:28538376-28538387
18	CEBPB	chr5:28538242-28538515	HepG2	liver:	n/a	chr5:28538404-28538415 chr5:28538376-28538387
19	CEBPB	chr5:28538294-28538486	Hela-S3	cervix:	n/a	chr5:28538404-28538415 chr5:28538376-28538387
20	CEBPB	chr5:28584953-28585329	Hela-S3	cervix:	n/a	chr5:28585203-28585214 chr5:28585136-28585147
21	CEBPB	chr5:28512795-28513113	HepG2	liver:	n/a	chr5:28512922-28512931 chr5:28512922-28512933 chr5:28512920-28512931 chr5:28512920-28512933
22	CEBPB	chr5:28512747-28513085	ECC-1	luminal epithelium:	n/a	chr5:28512922-28512931 chr5:28512922-28512933 chr5:28512920-28512931 chr5:28512920-28512933
23	CEBPB	chr5:28512774-28513142	Hela-S3	cervix:	n/a	chr5:28512922-28512931 chr5:28512922-28512933 chr5:28512920-28512931 chr5:28512920-28512933
24	CEBPB	chr5:28623857-28624057	Hela-S3	cervix:	n/a	n/a
25	CEBPB	chr5:28512744-28513081	H1-hESC	embryonic stem cell:	n/a	chr5:28512922-28512931 chr5:28512922-28512933 chr5:28512920-28512931 chr5:28512920-28512933
26	CEBPB	chr5:28542960-28543424	Hela-S3	cervix:	n/a	chr5:28542997-28543006
27	CHD2	chr5:28543996-28544131	GM12878	blood:	n/a	n/a
28	CTCF	chr5:28576360-28576510	HUVEC	blood vessel:	n/a	n/a
29	CTCF	chr5:28610315-28610383	Kidney_OC	kidney:	n/a	n/a
30	CTCF	chr5:28576159-28576529	GM12878	blood:	n/a	n/a
31	CTCF	chr5:28633860-28634010	HCM	heart:	n/a	n/a
32	CTCF	chr5:28576220-28576370	GM12878	blood:	n/a	n/a
33	CTCF	chr5:28576280-28576430	NB4	blood:	n/a	n/a
34	CTCF	chr5:28576240-28576390	HA-sp	spinal cord:	n/a	n/a
35	CTCF	chr5:28576260-28576410	NHEK	skin:	n/a	n/a
36	CTCF	chr5:28569681-28569709	LNCaP	prostate:	n/a	n/a
37	CTCF	chr5:28539618-28539659	LNCaP	prostate:	n/a	n/a
38	CTCF	chr5:28576121-28576455	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr5:28576143-28576460	T-47D	breast:	n/a	n/a
40	CTCF	chr5:28633965-28634101	MCF-7	breast:	n/a	n/a
41	CTCF	chr5:28576230-28576453	Hela-S3	cervix:	n/a	n/a
42	CTCF	chr5:28576300-28576450	NHLF	lung:	n/a	n/a
43	CTCF	chr5:28576268-28576433	HUVEC	blood vessel:	n/a	n/a
44	CTCF	chr5:28598637-28598672	GM10248	blood:	n/a	n/a
45	CTCF	chr5:28576242-28576437	LNCaP	prostate:	n/a	n/a
46	CTCF	chr5:28576288-28576401	GM13977	blood:	n/a	n/a
47	CTCF	chr5:28576240-28576390	GM12872	blood:	n/a	n/a
48	CTCF	chr5:28576280-28576430	Caco-2	colon:	n/a	n/a
49	CTCF	chr5:28575760-28575910	HEK293	kidney:	n/a	n/a
50	CTCF	chr5:28576300-28576450	NHEK	skin:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:28596874-28596924	ovcar-3	ovarian:	n/a
2	chr5:28596874-28596924	Hela-S3	cervix:	n/a
3	chr5:28596874-28596924	Caco-2	colon:	n/a
4	chr5:28596874-28596924	NB4	blood:	n/a
5	chr5:28596874-28596924	Hepatocyte	liver:	n/a
6	chr5:28596874-28596924	NHBE	bronchial:	n/a
7	chr5:28596874-28596924	HAEpiC	amniotic membrane:	n/a
8	chr5:28596874-28596924	AoSMC	blood vessel:	n/a
9	chr5:28596874-28596924	HMEC	breast:	n/a
10	chr5:28596874-28596924	HCT-116	colon:	n/a
11	chr5:28596874-28596924	A549	lung:	n/a
12	chr5:28596874-28596924	GM06990	blood:	n/a
13	chr5:28596874-28596924	HUVEC	blood vessel:	n/a
14	chr5:28596874-28596924	PANC-1	pancreas:	n/a
15	chr5:28596874-28596924	AG09309	skin:	n/a
16	chr5:28596874-28596924	U87	brain:	n/a
17	chr5:28596874-28596924	HCM	heart:	n/a
18	chr5:28596874-28596924	GM12892	blood:	n/a
19	chr5:28596874-28596924	SK-N-MC	brain:	n/a
20	chr5:28596874-28596924	AG04449	skin:	fetal
21	chr5:28596874-28596924	SKMC	muscle:	n/a
22	chr5:28596874-28596924	BE2_C	brain:	n/a
23	chr5:28596874-28596924	K562	blood:	n/a
24	chr5:28596874-28596924	NH-A	brain:	n/a
25	chr5:28596874-28596924	GM12878	blood:	n/a
26	chr5:28596874-28596924	SAEC	small airway:	n/a
27	chr5:28596874-28596924	SK-N-SH	brain:	n/a
28	chr5:28596874-28596924	PFSK-1	brain:	n/a
29	chr5:28596874-28596924	AG10803	skin:	n/a
30	chr5:28596874-28596924	ECC-1	luminal epithelium:	n/a
31	chr5:28596874-28596924	GM12891	blood:	n/a
32	chr5:28596874-28596924	HL-60	blood:	n/a
33	chr5:28596874-28596924	MCF10A-Er-Src	breast:	n/a
34	chr5:28596874-28596924	HRE	kidney:	n/a
35	chr5:28596874-28596924	BJ	skin:	n/a
36	chr5:28596874-28596924	HPAEpiC	pulmonary alveolar:	n/a
37	chr5:28596874-28596924	PrEC	prostate:	n/a
38	chr5:28596874-28596924	HEEpiC	esophagus:	n/a
39	chr5:28596874-28596924	NHDF-neo	bronchial:	n/a
40	chr5:28596874-28596924	HCPEpiC	choroid plexus:	n/a
41	chr5:28596874-28596924	NT2-D1	testis:	n/a
42	chr5:28596874-28596924	AG04450	lung:	fetal
43	chr5:28596874-28596924	MCF-7	breast:	n/a
44	chr5:28596874-28596924	HIPEpiC	eye:	n/a
45	chr5:28596874-28596924	CMK	blood:	n/a
46	chr5:28596874-28596924	RPTEC	kidney:	n/a
47	chr5:28596874-28596924	GM19239	blood:	n/a
48	chr5:28596874-28596924	IMR90	lung:	fetal
49	chr5:28596874-28596924	LNCaP	prostate:	n/a
50	chr5:28596874-28596924	H1-hESC	embryonic stem cell:	embryo

No.	Distal block	Cell Line	Cell type
1	chr5:28344853..28345525-chr5:28576087..28576818,2	MCF-7	breast:
2	chr5:28473713..28474256-chr5:28575899..28576440,2	MCF-7	breast:
3	chr5:28556590..28559536-chr7:6098281..6100048,2	MCF-7	breast:
4	chr5:28607591..28610399-chr5:28611364..28613106,2	K562	blood:
5	chr5:28622865..28624500-chr5:28625376..28628306,2	MCF-7	breast:
6	chr5:28374945..28377602-chr5:28528241..28531132,2	MCF-7	breast:
7	chr5:28622865..28624500-chr5:28625376..28628306,2	MCF-7	breast:
8	chr5:28607591..28610399-chr5:28611364..28613106,2	K562	blood:
9	chr5:28344802..28345403-chr5:28575923..28576762,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDH9-11	chr5:28629932-28630057	NONHSAT100819
2	lnc-CDH6-18	chr5:28524293-28524641	FPKM1_group_25126_transcript_1
3	lnc-CDH9-11	chr5:28625400-28625629	NONHSAT100819
4	lnc-CDH6-17	chr5:28603723-28604954	NONHSAT100817
5	lnc-CDH6-18	chr5:28602704-28602803	NONHSAT100815
6	lnc-CDH6-18	chr5:28602704-28602704	FPKM1_group_25126_transcript_1
7	lnc-CDH6-18	chr5:28524293-28524641	NONHSAT100815

Variant related genes	Relation type
RNU6-909P	TF binding region
RNU6-909P	CpG island
ENSG00000086232	chromatin interactions

Extended variants
information (count: 1097 )
Associated
traits (count: 94 )

Variant overlapped rSNPs/rCNVs (count:1097 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10940733	chr5:28500001-28500002	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs540278195	chr5:28500006-28500007	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs561755563	chr5:28500095-28500096	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs529253271	chr5:28500096-28500097	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs551012138	chr5:28500123-28500124	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs569511008	chr5:28500169-28500170	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs191914903	chr5:28500189-28500190	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs34334341	chr5:28500261-28500262	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs566615125	chr5:28500307-28500308	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs533873974	chr5:28500329-28500330	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs182558024	chr5:28500364-28500365	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs567168698	chr5:28500368-28500369	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs144904471	chr5:28500404-28500405	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs556215157	chr5:28500420-28500421	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs187982297	chr5:28500434-28500435	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs147518592	chr5:28500465-28500466	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs113379244	chr5:28500476-28500477	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs145178835	chr5:28500507-28500508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs550309968	chr5:28500544-28500545	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs193071712	chr5:28500565-28500566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs548105833	chr5:28500577-28500578	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs9292264	chr5:28500593-28500594	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs374603263	chr5:28500629-28500630	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs9292265	chr5:28500656-28500657	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs185553835	chr5:28500673-28500674	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs9986277	chr5:28500714-28500715	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs566803420	chr5:28500730-28500731	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs535684965	chr5:28500756-28500757	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs533671860	chr5:28500777-28500778	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs543637090	chr5:28505031-28505032	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs375919252	chr5:28505046-28505047	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs564678586	chr5:28505068-28505069	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs532074925	chr5:28505076-28505077	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs141850924	chr5:28505089-28505090	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs112018200	chr5:28505157-28505158	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs558930149	chr5:28505184-28505185	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs188046959	chr5:28505195-28505196	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs529621792	chr5:28505203-28505204	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs10214113	chr5:28505206-28505207	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs569830051	chr5:28505243-28505244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs542504735	chr5:28505265-28505266	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs533241431	chr5:28505287-28505288	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs551535764	chr5:28505289-28505290	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs552079413	chr5:28505377-28505378	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs192623737	chr5:28505418-28505419	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs150200407	chr5:28505435-28505436	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs554268913	chr5:28505450-28505451	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs566095629	chr5:28505457-28505458	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs138706241	chr5:28505463-28505464	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs114404754	chr5:28505486-28505487	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:94)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Salivary gland tumor	18059337	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Kartagener syndrome	16639409	CNVD
Medulloblastoma	21979893	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Cervical squamous cell carcinoma	21590768	CNVD
Non-small cell lung cancer	20864512	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Multiple myeloma	17550852	CNVD
prenatal diagnosis	22389664	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Cancer	16751803	CNVD
Breast cancer	16608533	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Intellectual disability	22102821	CNVD
Lung cancer	16740712	CNVD
Renal cell carcinoma	18194544	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Non-small cell lung cancer	19010865	CNVD
Glioblastoma multiforme	22286061	CNVD
Compulsive disorder	18923513	CNVD
Epilepsy	18923513	CNVD
Prader-willi syndrome	18923513	CNVD
small cell lung cancer	20016488	CNVD
Ovarian cancer	21720365	CNVD
Lung cancer	18438408	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Esophageal cancer	20955586	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:28500000-28500800	Enhancers	NH-A	brain
2	chr5:28505000-28505600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:28505200-28506000	Enhancers	Hela-S3	cervix
4	chr5:28505400-28506200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:28506200-28506400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:28512600-28513400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:28512800-28513000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:28513000-28513200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:28513000-28513800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:28513400-28513800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:28513800-28514000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:28513800-28516600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:28514000-28517400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:28516200-28517800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:28516600-28517400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:28516800-28517400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:28516800-28517400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr5:28516800-28518000	Enhancers	NH-A	brain
19	chr5:28517000-28517400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr5:28517200-28517800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:28517200-28518200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:28517400-28518000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr5:28517400-28523800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr5:28517600-28518200	Enhancers	Hela-S3	cervix
25	chr5:28517800-28518200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:28517800-28518200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr5:28518200-28523000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:28518200-28523600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:28523000-28523400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr5:28523400-28523600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:28523600-28524000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr5:28523600-28525000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:28523600-28525400	Enhancers	NH-A	brain
34	chr5:28523800-28524600	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr5:28523800-28524600	Enhancers	Fetal Kidney	kidney
36	chr5:28523800-28524800	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr5:28523800-28524800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:28523800-28525000	Enhancers	HUVEC	blood vessel
39	chr5:28524000-28524200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr5:28524000-28524600	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr5:28524000-28524600	Enhancers	Hela-S3	cervix
42	chr5:28524000-28525000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr5:28524200-28524600	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr5:28524200-28524600	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr5:28535200-28535600	Enhancers	Hela-S3	cervix
46	chr5:28542200-28544200	Enhancers	Hela-S3	cervix
47	chr5:28542800-28544200	Enhancers	NH-A	brain
48	chr5:28543000-28544000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr5:28547600-28548200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr5:28561600-28562200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links