Variant report

Variant	nsv881771
Chromosome Location	chr5:68828296-68904678
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:690)
CpG islands
(count:610)
Chromatin interactive
region (count:3)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:690 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr5:68855731-68856077	GM12878	blood:	n/a	n/a
2	BATF	chr5:68897780-68898118	GM12878	blood:	n/a	n/a
3	BATF	chr5:68855769-68856236	GM12878	blood:	n/a	n/a
4	BATF	chr5:68897794-68898185	GM12878	blood:	n/a	n/a
5	BATF	chr5:68857142-68857346	GM12878	blood:	n/a	n/a
6	BATF	chr5:68856954-68857395	GM12878	blood:	n/a	n/a
7	BATF	chr5:68856265-68856477	GM12878	blood:	n/a	n/a
8	BCL11A	chr5:68857029-68857406	GM12878	blood:	n/a	n/a
9	BCL11A	chr5:68855749-68856242	GM12878	blood:	n/a	chr5:68855979-68855988
10	BCL11A	chr5:68897742-68898263	GM12878	blood:	n/a	n/a
11	BCL11A	chr5:68897862-68898148	GM12878	blood:	n/a	n/a
12	BCL11A	chr5:68855639-68856223	GM12878	blood:	n/a	chr5:68855979-68855988
13	BCLAF1	chr5:68855724-68856116	K562	blood:	n/a	chr5:68855979-68855988
14	BCLAF1	chr5:68855724-68856135	GM12878	blood:	n/a	chr5:68855979-68855988
15	BCLAF1	chr5:68855724-68856111	K562	blood:	n/a	chr5:68855979-68855988
16	BCLAF1	chr5:68855732-68856164	GM12878	blood:	n/a	chr5:68855979-68855988
17	BHLHE40	chr5:68855820-68856132	HepG2	liver:	n/a	chr5:68855927-68855943 chr5:68855911-68855927
18	BRCA1	chr5:68855848-68856045	Hela-S3	cervix:	n/a	n/a
19	CBX3	chr5:68855601-68856119	K562	blood:	n/a	n/a
20	CBX3	chr5:68855493-68856354	K562	blood:	n/a	n/a
21	CEBPB	chr5:68834691-68834785	HepG2	liver:	n/a	n/a
22	CEBPB	chr5:68834723-68834923	HepG2	liver:	n/a	n/a
23	CEBPB	chr5:68857201-68857397	K562	blood:	n/a	n/a
24	CEBPB	chr5:68857055-68857464	K562	blood:	n/a	n/a
25	CEBPB	chr5:68855845-68856045	Hela-S3	cervix:	n/a	n/a
26	CEBPD	chr5:68855760-68856284	K562	blood:	n/a	n/a
27	CHD2	chr5:68855923-68856048	GM12878	blood:	n/a	n/a
28	CHD2	chr5:68855844-68855949	H1-hESC	embryonic stem cell:	n/a	n/a
29	CHD2	chr5:68855853-68856047	Hela-S3	cervix:	n/a	n/a
30	CREB1	chr5:68855831-68856118	A549	lung:	n/a	n/a
31	CTCF	chr5:68833676-68833858	LNCaP	prostate:	n/a	n/a
32	CTCF	chr5:68855980-68856130	HUVEC	blood vessel:	n/a	n/a
33	CTCF	chr5:68855980-68856130	HRE	kidney:	n/a	n/a
34	CTCF	chr5:68855980-68856130	HCPEpiC	choroid plexus:	n/a	n/a
35	CTCF	chr5:68855649-68856235	A549	lung:	n/a	n/a
36	CTCF	chr5:68855720-68855870	BE2_C	brain:	n/a	n/a
37	CTCF	chr5:68855960-68856110	Hela-S3	cervix:	n/a	n/a
38	CTCF	chr5:68855980-68856130	GM06990	blood:	n/a	n/a
39	CTCF	chr5:68855858-68856054	GM20000	blood:	n/a	n/a
40	CTCF	chr5:68856000-68856150	GM12871	blood:	n/a	n/a
41	CTCF	chr5:68855845-68856111	Kidney_OC	kidney:	n/a	n/a
42	CTCF	chr5:68855860-68856010	GM12873	blood:	n/a	n/a
43	CTCF	chr5:68855960-68856110	NHEK	skin:	n/a	n/a
44	CTCF	chr5:68855980-68856130	BJ	skin:	n/a	n/a
45	CTCF	chr5:68855720-68855870	Hela-S3	cervix:	n/a	n/a
46	CTCF	chr5:68855720-68855870	AoAF	blood vessel:	n/a	n/a
47	CTCF	chr5:68855700-68855850	GM12870	blood:	n/a	n/a
48	CTCF	chr5:68855616-68856209	A549	lung:	n/a	n/a
49	CTCF	chr5:68856000-68856150	GM12867	blood:	n/a	n/a
50	CTCF	chr5:68855720-68855870	HepG2	liver:	n/a	n/a

(count:610 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:68859882-68859932	SK-N-SH_RA	brain:	n/a
2	chr5:68855560-68855610	HL-60	blood:	n/a
3	chr5:68855873-68855923	SK-N-SH_RA	brain:	n/a
4	chr5:68856077-68856127	IMR90	lung:	fetal
5	chr5:68855560-68855610	HEK293	kidney:	embryo
6	chr5:68859882-68859932	NT2-D1	testis:	n/a
7	chr5:68859882-68859932	HUVEC	blood vessel:	n/a
8	chr5:68856062-68856112	AG09319	gingival:	n/a
9	chr5:68852996-68853046	AG04450	lung:	fetal
10	chr5:68868293-68868343	Jurkat	blood:	n/a
11	chr5:68857760-68857810	Jurkat	blood:	n/a
12	chr5:68852996-68853046	SK-N-SH_RA	brain:	n/a
13	chr5:68855810-68855860	NHBE	bronchial:	n/a
14	chr5:68856065-68856115	HMEC	breast:	n/a
15	chr5:68856077-68856127	GM19239	blood:	n/a
16	chr5:68857760-68857810	T-47D	breast:	n/a
17	chr5:68856062-68856112	H1-hESC	embryonic stem cell:	embryo
18	chr5:68856065-68856115	MCF-7	breast:	n/a
19	chr5:68852996-68853046	MCF-7	breast:	n/a
20	chr5:68856065-68856115	AG04450	lung:	fetal
21	chr5:68856077-68856127	HPAEpiC	pulmonary alveolar:	n/a
22	chr5:68855873-68855923	LNCaP	prostate:	n/a
23	chr5:68855810-68855860	AoSMC	blood vessel:	n/a
24	chr5:68856077-68856127	HRE	kidney:	n/a
25	chr5:68857760-68857810	MCF10A-Er-Src	breast:	n/a
26	chr5:68852996-68853046	HAEpiC	amniotic membrane:	n/a
27	chr5:68856062-68856112	HEEpiC	esophagus:	n/a
28	chr5:68857760-68857810	MCF-7	breast:	n/a
29	chr5:68857760-68857810	GM12878	blood:	n/a
30	chr5:68855810-68855860	PrEC	prostate:	n/a
31	chr5:68852996-68853046	HCM	heart:	n/a
32	chr5:68856077-68856127	Caco-2	colon:	n/a
33	chr5:68856077-68856127	Jurkat	blood:	n/a
34	chr5:68856065-68856115	PrEC	prostate:	n/a
35	chr5:68859882-68859932	A549	lung:	n/a
36	chr5:68856062-68856112	NB4	blood:	n/a
37	chr5:68856065-68856115	HEK293	kidney:	embryo
38	chr5:68855873-68855923	CMK	blood:	n/a
39	chr5:68855560-68855610	AG09319	gingival:	n/a
40	chr5:68856065-68856115	HCF	heart:	n/a
41	chr5:68855810-68855860	ProgFib	skin:	n/a
42	chr5:68855873-68855923	RPTEC	kidney:	n/a
43	chr5:68859882-68859932	AG09319	gingival:	n/a
44	chr5:68856065-68856115	PANC-1	pancreas:	n/a
45	chr5:68852996-68853046	A549	lung:	n/a
46	chr5:68868293-68868343	SAEC	small airway:	n/a
47	chr5:68856077-68856127	HCT-116	colon:	n/a
48	chr5:68856062-68856112	MCF10A-Er-Src	breast:	n/a
49	chr5:68855810-68855860	HRCEpiC	kidney:	n/a
50	chr5:68852996-68853046	K562	blood:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:68786843..68790127-chr5:68821932..68828319,7	MCF-7	breast:
2	chr5:68711082..68712894-chr5:68825364..68828331,2	MCF-7	breast:
3	chr5:68791729..68794377-chr5:68827769..68829901,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OCLN-1	chr5:68860927-68860960	NONHSAT101929
2	lnc-OCLN-1	chr5:68858500-68858597	NONHSAT101929
3	lnc-GTF2H2C-1	chr5:68889300-68889532	NONHSAT101931
4	lnc-GTF2H2C-1	chr5:68890071-68890550	NONHSAT101931
5	lnc-OCLN-1	chr5:68856086-68856428	NONHSAT101929

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	GTF2H2D	hsa-miR-30a-5p	chr5:68888221-68888242

Variant related genes	Relation type
GTF2H2C	TF binding region
RNU6-724P	TF binding region
ENSG00000238740	TF binding region
OCLN	TF binding region
ENSG00000248477	TF binding region
GTF2H2C	CpG island
RNU6-724P	CpG island
ENSG00000238740	CpG island
OCLN	CpG island
ENSG00000248477	CpG island
ENSG00000152939	chromatin interactions
ENSG00000197822	chromatin interactions

Extended variants
information (count: 675 )
Associated
traits (count: 114 )

Variant overlapped rSNPs/rCNVs (count:675 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs28529133	chr5:68828296-68828297	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs567448447	chr5:68828321-68828322	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs532632171	chr5:68828349-68828350	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs115224058	chr5:68828372-68828373	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs562856629	chr5:68828412-68828413	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs183990212	chr5:68828429-68828430	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs570982287	chr5:68828430-68828431	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs538263536	chr5:68828465-68828466	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs556901438	chr5:68828516-68828517	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs575877401	chr5:68828518-68828519	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs188482912	chr5:68828520-68828521	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs554922934	chr5:68828524-68828525	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs150895774	chr5:68828533-68828534	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs28482436	chr5:68828548-68828549	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs548471228	chr5:68828549-68828550	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs565392036	chr5:68828561-68828562	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs532632832	chr5:68828568-68828569	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs544642813	chr5:68828645-68828646	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs562901462	chr5:68828655-68828656	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs530756393	chr5:68828672-68828673	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs369061489	chr5:68828720-68828721	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs549270445	chr5:68828738-68828739	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200582624	chr5:68828795-68828796	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs567403325	chr5:68828801-68828802	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs71576926	chr5:68828803-68828804	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
26	rs546355773	chr5:68828805-68828806	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs373564373	chr5:68828826-68828827	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201239158	chr5:68828851-68828852	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs376503852	chr5:68828852-68828853	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs370858264	chr5:68828854-68828855	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs374239552	chr5:68828855-68828856	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs571044105	chr5:68828864-68828865	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs544730542	chr5:68828865-68828866	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs144351542	chr5:68828866-68828867	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
35	rs182487485	chr5:68828873-68828874	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs564527301	chr5:68828878-68828879	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs200103849	chr5:68828886-68828887	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs533409522	chr5:68828904-68828905	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs552390887	chr5:68828905-68828906	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs547004067	chr5:68828906-68828907	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs535824372	chr5:68828912-68828913	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs202034476	chr5:68828914-68828915	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs187176096	chr5:68828915-68828916	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs527907847	chr5:68828916-68828917	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs555264799	chr5:68828917-68828918	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs201377668	chr5:68828933-68828934	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs141432883	chr5:68828935-68828936	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs200658521	chr5:68828961-68828962	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs191183071	chr5:68828963-68828964	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs183743387	chr5:68829003-68829004	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:114)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ovarian cancer	21781307	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	22032731	CNVD
Prostate cancer	21965145	CNVD
Esophageal cancer	20955586	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Ovarian cancer	20844748	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Bladder cancer	21909424	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17133270	CNVD
Breast cancer	19602461	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
abnormal development	18461090	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	21045282	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Myelodysplastic syndrome	18663149	CNVD
Spinal muscular atrophy	15981080	CNVD
Spinal muscular atrophy	18839960	CNVD
Spinal muscular atrophy	19716110	CNVD
Sezary syndrome	18413736	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21990379	CNVD
Hirschsprung''s Disease	21712996	CNVD
Apoptosis	19488400	CNVD
Breast cancer	22048815	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Acute monocytic leukemia	16498392	CNVD
Colorectal cancer	20459617	CNVD
Gastric adenocarcinoma	19115996	CNVD
Spinal muscular atrophy	17160897	CNVD
Spinal muscular atrophy	17668391	CNVD
Spinal muscular atrophy	17668395	CNVD
Glioblastoma multiforme	22286061	CNVD
craniofacial dysmorphism	21918468	CNVD
Multiple myeloma	16616336	CNVD
Prostate cancer	16461572	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Pseudo-TORCH syndrome	20727516	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Autism	21865298	CNVD
Medullary thyroid carcinoma	18765511	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Obesity	21131291	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:376 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68815800-68831000	Weak transcription	HepG2	liver
2	chr5:68821800-68830800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:68822400-68829400	Weak transcription	Fetal Stomach	stomach
4	chr5:68823600-68829200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:68824000-68830600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:68824000-68855400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:68824200-68829600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:68824400-68832400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:68826600-68830600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr5:68827200-68829000	Weak transcription	Fetal Intestine Large	intestine
11	chr5:68827200-68829200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:68827200-68831000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:68827600-68829200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr5:68827600-68829600	Strong transcription	Fetal Intestine Small	intestine
15	chr5:68827600-68830200	Weak transcription	GM12878-XiMat	blood
16	chr5:68827600-68830800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:68827800-68828800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:68827800-68829000	Weak transcription	Stomach Mucosa	stomach
19	chr5:68827800-68830200	Weak transcription	Brain Anterior Caudate	brain
20	chr5:68828000-68828400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:68828000-68829600	Strong transcription	Liver	Liver
22	chr5:68828200-68829200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr5:68828200-68830800	Weak transcription	Gastric	stomach
24	chr5:68828200-68840800	Weak transcription	Pancreas	Pancrea
25	chr5:68828800-68829800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:68829000-68829400	Enhancers	Fetal Intestine Large	intestine
27	chr5:68829000-68829800	Enhancers	Stomach Mucosa	stomach
28	chr5:68829200-68829400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:68829200-68829400	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr5:68829200-68829400	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr5:68829200-68829400	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr5:68829400-68829600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr5:68829600-68831200	Weak transcription	Liver	Liver
34	chr5:68829600-68855400	Weak transcription	Fetal Intestine Small	intestine
35	chr5:68829800-68832000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:68840800-68841000	Enhancers	Pancreas	Pancrea
37	chr5:68840800-68841000	Enhancers	HepG2	liver
38	chr5:68841000-68841200	Weak transcription	Pancreas	Pancrea
39	chr5:68841000-68855200	Weak transcription	HepG2	liver
40	chr5:68844400-68855400	Weak transcription	Fetal Intestine Large	intestine
41	chr5:68845800-68855600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr5:68855000-68855200	Enhancers	Dnd41	blood
43	chr5:68855000-68855600	Enhancers	Primary T cells fromperipheralblood	blood
44	chr5:68855200-68855400	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr5:68855200-68855400	Enhancers	Adipose Nuclei	Adipose
46	chr5:68855200-68855400	Enhancers	Liver	Liver
47	chr5:68855200-68855400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr5:68855200-68855400	Enhancers	HepG2	liver
49	chr5:68855200-68855400	Enhancers	HUVEC	blood vessel
50	chr5:68855200-68855600	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links