Variant report

Variant	nsv882234
Chromosome Location	chr5:80853708-80966666
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:395)
CpG islands
(count:183)
Chromatin interactive
region (count:33)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:395 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:80922360-80922638	K562	blood:	n/a	n/a
2	ARID3A	chr5:80922388-80922581	HepG2	liver:	n/a	n/a
3	ARID3A	chr5:80875360-80875795	K562	blood:	n/a	chr5:80875651-80875667 chr5:80875650-80875666
4	ATF1	chr5:80875425-80875669	K562	blood:	n/a	n/a
5	ATF2	chr5:80926794-80927286	GM12878	blood:	n/a	n/a
6	BACH1	chr5:80902101-80902295	H1-hESC	embryonic stem cell:	n/a	n/a
7	BCLAF1	chr5:80926895-80927254	GM12878	blood:	n/a	chr5:80927071-80927080
8	BHLHE40	chr5:80926952-80927319	GM12878	blood:	n/a	n/a
9	BHLHE40	chr5:80875413-80875600	K562	blood:	n/a	n/a
10	CBX3	chr5:80905521-80905970	K562	blood:	n/a	n/a
11	CCNT2	chr5:80898573-80898696	K562	blood:	n/a	n/a
12	CCNT2	chr5:80875354-80875643	K562	blood:	n/a	n/a
13	CEBPB	chr5:80875416-80875628	HepG2	liver:	n/a	chr5:80875545-80875556
14	CEBPB	chr5:80894755-80894917	A549	lung:	n/a	chr5:80894817-80894828
15	CEBPB	chr5:80894695-80894965	HepG2	liver:	n/a	chr5:80894817-80894828
16	CEBPB	chr5:80961277-80961422	K562	blood:	n/a	n/a
17	CEBPB	chr5:80875322-80875737	K562	blood:	n/a	chr5:80875545-80875556
18	CEBPB	chr5:80933278-80933515	A549	lung:	n/a	n/a
19	CEBPB	chr5:80934439-80934491	Hela-S3	cervix:	n/a	n/a
20	CEBPB	chr5:80911188-80911432	A549	lung:	n/a	n/a
21	CEBPB	chr5:80911151-80911470	HepG2	liver:	n/a	n/a
22	CEBPB	chr5:80911147-80911374	IMR90	lung:	n/a	n/a
23	CEBPB	chr5:80896660-80896940	A549	lung:	n/a	chr5:80896765-80896776
24	CEBPB	chr5:80875358-80875730	K562	blood:	n/a	chr5:80875545-80875556
25	CEBPB	chr5:80896649-80896965	HepG2	liver:	n/a	chr5:80896765-80896776 chr5:80896949-80896961
26	CEBPB	chr5:80934362-80934557	K562	blood:	n/a	n/a
27	CEBPB	chr5:80875375-80875618	K562	blood:	n/a	chr5:80875545-80875556
28	CEBPB	chr5:80896670-80896985	IMR90	lung:	n/a	chr5:80896765-80896776 chr5:80896949-80896961
29	CEBPB	chr5:80944805-80944897	K562	blood:	n/a	n/a
30	CEBPB	chr5:80933203-80933458	HepG2	liver:	n/a	n/a
31	CEBPB	chr5:80922245-80922799	IMR90	lung:	n/a	n/a
32	CEBPB	chr5:80922407-80922756	A549	lung:	n/a	n/a
33	CEBPB	chr5:80896667-80896990	K562	blood:	n/a	chr5:80896765-80896776 chr5:80896949-80896961
34	CEBPB	chr5:80905700-80905858	H1-hESC	embryonic stem cell:	n/a	n/a
35	CEBPB	chr5:80894743-80894938	K562	blood:	n/a	chr5:80894817-80894828
36	CEBPB	chr5:80932774-80932778	H1-hESC	embryonic stem cell:	n/a	n/a
37	CEBPB	chr5:80922304-80922846	A549	lung:	n/a	n/a
38	CEBPB	chr5:80878335-80878599	K562	blood:	n/a	n/a
39	CHD1	chr5:80935017-80935033	GM12878	blood:	n/a	n/a
40	CHD2	chr5:80902097-80902313	H1-hESC	embryonic stem cell:	n/a	n/a
41	CREB1	chr5:80902014-80902313	H1-hESC	embryonic stem cell:	n/a	n/a
42	CTCF	chr5:80909420-80909570	MCF-7	breast:	n/a	chr5:80909499-80909515 chr5:80909498-80909516 chr5:80909493-80909514 chr5:80909503-80909511
43	CTCF	chr5:80928280-80928430	GM12875	blood:	n/a	n/a
44	CTCF	chr5:80925880-80926030	HPAF	blood vessel:	n/a	n/a
45	CTCF	chr5:80942620-80942770	NHLF	lung:	n/a	n/a
46	CTCF	chr5:80909390-80909651	MCF-7	breast:	n/a	chr5:80909499-80909515 chr5:80909498-80909516 chr5:80909493-80909514 chr5:80909503-80909511
47	CTCF	chr5:80948478-80948511	Pancreas_OC	pancreas:	n/a	n/a
48	CTCF	chr5:80909380-80909530	MCF-7	breast:	n/a	chr5:80909499-80909515 chr5:80909498-80909516 chr5:80909493-80909514 chr5:80909503-80909511
49	CTCF	chr5:80909400-80909550	RPTEC	kidney:	n/a	chr5:80909499-80909515 chr5:80909498-80909516 chr5:80909493-80909514 chr5:80909503-80909511
50	CTCF	chr5:80909458-80909549	HUVEC	blood vessel:	n/a	chr5:80909499-80909515 chr5:80909498-80909516 chr5:80909493-80909514 chr5:80909503-80909511

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:80885936-80885986	HRE	kidney:	n/a
2	chr5:80885936-80885986	SK-N-MC	brain:	n/a
3	chr5:80901358-80901408	HCM	heart:	n/a
4	chr5:80901358-80901408	K562	blood:	n/a
5	chr5:80901358-80901408	ECC-1	luminal epithelium:	n/a
6	chr5:80922537-80922587	K562	blood:	n/a
7	chr5:80901358-80901408	HEK293	kidney:	embryo
8	chr5:80922537-80922587	AG09309	skin:	n/a
9	chr5:80922537-80922587	SK-N-SH	brain:	n/a
10	chr5:80885936-80885986	HCM	heart:	n/a
11	chr5:80901358-80901408	NHDF-neo	bronchial:	n/a
12	chr5:80885936-80885986	HCT-116	colon:	n/a
13	chr5:80922537-80922587	HEEpiC	esophagus:	n/a
14	chr5:80922537-80922587	H1-hESC	embryonic stem cell:	embryo
15	chr5:80901358-80901408	SKMC	muscle:	n/a
16	chr5:80901358-80901408	NHBE	bronchial:	n/a
17	chr5:80922537-80922587	HepG2	liver:	n/a
18	chr5:80885936-80885986	HMEC	breast:	n/a
19	chr5:80901358-80901408	A549	lung:	n/a
20	chr5:80901358-80901408	SK-N-SH_RA	brain:	n/a
21	chr5:80901358-80901408	AG09319	gingival:	n/a
22	chr5:80922537-80922587	SK-N-MC	brain:	n/a
23	chr5:80922537-80922587	LNCaP	prostate:	n/a
24	chr5:80901358-80901408	GM12892	blood:	n/a
25	chr5:80922537-80922587	SAEC	small airway:	n/a
26	chr5:80885936-80885986	AG09309	skin:	n/a
27	chr5:80901358-80901408	SK-N-MC	brain:	n/a
28	chr5:80922537-80922587	CMK	blood:	n/a
29	chr5:80885936-80885986	NT2-D1	testis:	n/a
30	chr5:80901358-80901408	BE2_C	brain:	n/a
31	chr5:80901358-80901408	HL-60	blood:	n/a
32	chr5:80922537-80922587	HPAEpiC	pulmonary alveolar:	n/a
33	chr5:80885936-80885986	ovcar-3	ovarian:	n/a
34	chr5:80922537-80922587	HCPEpiC	choroid plexus:	n/a
35	chr5:80885936-80885986	RPTEC	kidney:	n/a
36	chr5:80901358-80901408	GM12891	blood:	n/a
37	chr5:80885936-80885986	MCF10A-Er-Src	breast:	n/a
38	chr5:80885936-80885986	SAEC	small airway:	n/a
39	chr5:80901358-80901408	T-47D	breast:	n/a
40	chr5:80885936-80885986	BJ	skin:	n/a
41	chr5:80885936-80885986	SK-N-SH	brain:	n/a
42	chr5:80922537-80922587	Hela-S3	cervix:	n/a
43	chr5:80901358-80901408	AoSMC	blood vessel:	n/a
44	chr5:80922537-80922587	MCF-7	breast:	n/a
45	chr5:80901358-80901408	AG04450	lung:	fetal
46	chr5:80901358-80901408	Caco-2	colon:	n/a
47	chr5:80922537-80922587	AG04449	skin:	fetal
48	chr5:80885936-80885986	GM12892	blood:	n/a
49	chr5:80885936-80885986	HUVEC	blood vessel:	n/a
50	chr5:80901358-80901408	ovcar-3	ovarian:	n/a

(count:33 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:80859809..80862860-chr5:80870280..80872948,3	K562	blood:
2	chr5:80934108..80935930-chr5:80938567..80940586,2	K562	blood:
3	chr5:80965614..80968004-chr5:80970828..80973570,3	K562	blood:
4	chr5:80959308..80961024-chr5:81090290..81092398,2	K562	blood:
5	chr5:80946322..80948172-chr5:80949841..80952303,2	K562	blood:
6	chr5:80931139..80933943-chr5:80935605..80937292,2	K562	blood:
7	chr5:80931196..80933943-chr5:80935625..80937292,2	K562	blood:
8	chr5:80870794..80873300-chr5:80875722..80877575,2	K562	blood:
9	chr5:80859809..80862860-chr5:80870280..80872948,3	K562	blood:
10	chr5:80931196..80933943-chr5:80935625..80937292,2	K562	blood:
11	chr5:80900552..80902369-chr5:80906514..80908761,2	K562	blood:
12	chr5:80961823..80964261-chr5:80965222..80967772,3	K562	blood:
13	chr5:80872758..80875728-chr5:80879949..80882376,2	K562	blood:
14	chr5:80895098..80897934-chr5:80899967..80903607,4	K562	blood:
15	chr5:80870794..80873300-chr5:80875722..80877575,2	K562	blood:
16	chr5:80931139..80933943-chr5:80935605..80937292,2	K562	blood:
17	chr5:80934108..80935930-chr5:80938567..80940586,2	K562	blood:
18	chr5:80895098..80897934-chr5:80899967..80903607,4	K562	blood:
19	chr5:80872758..80875728-chr5:80879949..80882376,2	K562	blood:
20	chr5:80937480..80940256-chr5:80940937..80944282,3	K562	blood:
21	chr5:80848254..80852026-chr5:80853882..80857592,4	K562	blood:
22	chr5:80900552..80902369-chr5:80906514..80908761,2	K562	blood:
23	chr5:80874625..80877374-chr5:81570400..81571959,2	K562	blood:
24	chr5:80961823..80964261-chr5:80965222..80967772,3	K562	blood:
25	chr5:80802649..80803453-chr5:80909108..80909743,2	MCF-7	breast:
26	chr5:80897320..80900374-chr5:80908175..80911251,3	K562	blood:
27	chr5:80940231..80942233-chr5:81040176..81042074,2	K562	blood:
28	chr5:80946322..80948172-chr5:80949841..80952303,2	K562	blood:
29	chr5:80897320..80900374-chr5:80908175..80911251,3	K562	blood:
30	chr5:80937480..80940256-chr5:80940937..80944282,3	K562	blood:
31	chr5:80853359..80856106-chr5:80858395..80860848,2	K562	blood:
32	chr5:80961632..80964415-chr5:80970591..80972149,2	MCF-7	breast:
33	chr5:80853359..80856106-chr5:80858395..80860848,2	K562	blood:

No data

Variant related genes	Relation type
SSBP2	TF binding region
SSBP2	CpG island

Extended variants
information (count: 3762 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:3762 , 50 per page) page: 1 2 3 4 5 6 7 ... 76

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10056236	chr5:80853708-80853709	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs6896235	chr5:80853765-80853766	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs185625696	chr5:80853822-80853823	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs532403927	chr5:80853843-80853844	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs552401384	chr5:80853897-80853898	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs569003233	chr5:80853967-80853968	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs148648257	chr5:80854085-80854086	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs537559166	chr5:80854141-80854142	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs369722341	chr5:80854291-80854292	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs11268519	chr5:80854317-80854318	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs33949335	chr5:80854318-80854319	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs73766269	chr5:80854332-80854333	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs73766270	chr5:80854334-80854335	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs115162039	chr5:80854339-80854340	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs538679573	chr5:80854366-80854367	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs10066110	chr5:80854372-80854373	Weak transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs143262696	chr5:80854393-80854394	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs7702047	chr5:80854395-80854396	Weak transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs573210658	chr5:80854669-80854670	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs538900676	chr5:80854704-80854705	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs190766095	chr5:80854736-80854737	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs7720123	chr5:80854762-80854763	Weak transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs544416285	chr5:80854796-80854797	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs561414217	chr5:80854797-80854798	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs7720383	chr5:80854800-80854801	Weak transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs540637547	chr5:80854825-80854826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs560478312	chr5:80854833-80854834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs554819924	chr5:80854956-80854957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs141356450	chr5:80854969-80854970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs552412098	chr5:80855000-80855001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs534069358	chr5:80855002-80855003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs6884862	chr5:80855058-80855059	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs531512282	chr5:80855062-80855063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs548026768	chr5:80855063-80855064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs182958619	chr5:80855066-80855067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs71594674	chr5:80855108-80855109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs6866155	chr5:80855110-80855111	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs570087876	chr5:80855117-80855118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs538964386	chr5:80855133-80855134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs559190666	chr5:80855137-80855138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs575779751	chr5:80855138-80855139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs150412124	chr5:80855155-80855156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs187132191	chr5:80855156-80855157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs192135828	chr5:80855162-80855163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs554140363	chr5:80855167-80855168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs36034616	chr5:80855203-80855204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs398064960	chr5:80855220-80855221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs546252635	chr5:80855236-80855237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs540700424	chr5:80855245-80855246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs560493862	chr5:80855267-80855268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Prostate cancer	21965145	CNVD
Ovarian cancer	20844748	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	19602461	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian cancer	21720365	CNVD
Acute myeloid leukemia	21251322	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Myelofibrosis	22110671	CNVD
craniofacial dysmorphism	21918468	CNVD
lymphocytic leukemia	21291569	CNVD
Lung cancer	16773561	CNVD
Multiple myeloma	16616336	CNVD
Testicular cancer	18059402	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16573809	CNVD
Tetralogy of Fallot	22912587	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1538 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80803600-80875200	Weak transcription	Fetal Brain Female	brain
2	chr5:80825200-80865200	Weak transcription	Fetal Brain Male	brain
3	chr5:80828800-80863400	Weak transcription	Fetal Lung	lung
4	chr5:80830000-80853800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:80834400-80867000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr5:80834800-80866400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr5:80834800-80870000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr5:80835200-80863000	Weak transcription	Fetal Muscle Leg	muscle
9	chr5:80835200-80872800	Weak transcription	Fetal Kidney	kidney
10	chr5:80835200-80875200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr5:80835600-80876000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr5:80840800-80883400	Weak transcription	HSMM	muscle
13	chr5:80840800-80884600	Weak transcription	Ovary	ovary
14	chr5:80844200-80884600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:80845800-80862000	Weak transcription	Thymus	Thymus
16	chr5:80845800-80863000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:80846200-80880600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:80846600-80860000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:80848000-80856400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:80849000-80885600	Weak transcription	Left Ventricle	heart
21	chr5:80849400-80856200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:80850000-80860000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr5:80850000-80862000	Weak transcription	Primary B cells from cord blood	blood
24	chr5:80850200-80862000	Weak transcription	Primary T cells from cord blood	blood
25	chr5:80850800-80864000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr5:80850800-80866800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:80851400-80853800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:80851400-80853800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:80852200-80854200	Strong transcription	Primary hematopoietic stem cells	blood
30	chr5:80852800-80854200	Strong transcription	Fetal Thymus	thymus
31	chr5:80853400-80854200	Enhancers	Dnd41	blood
32	chr5:80853800-80854200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr5:80853800-80854600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr5:80853800-80854800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:80854200-80854400	Genic enhancers	Fetal Thymus	thymus
36	chr5:80854200-80859000	Weak transcription	Dnd41	blood
37	chr5:80854200-80859800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr5:80854400-80862200	Weak transcription	Fetal Thymus	thymus
39	chr5:80854600-80859600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr5:80854800-80858600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr5:80856000-80856400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr5:80856200-80856600	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr5:80856600-80860000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr5:80858600-80858800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:80858800-80860400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr5:80859000-80859600	Enhancers	Dnd41	blood
47	chr5:80859000-80863400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr5:80859600-80860600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr5:80859600-80861400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr5:80859600-80861600	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links