Variant report

Variant	nsv883281
Chromosome Location	chr5:179220010-179250500
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3998)
CpG islands
(count:4092)
Chromatin interactive
region (count:108)
LncRNA
region (count:13)
Mature miRNA
region (count: 2)
miRNA target
sites (count:0)

(count:3998 , 50 per page) page: 1 2 3 4 5 6 7 ... 80

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:179234889-179235089	HepG2	liver:	n/a	n/a
2	ARID3A	chr5:179235335-179235623	HepG2	liver:	n/a	n/a
3	ARID3A	chr5:179238472-179238657	HepG2	liver:	n/a	n/a
4	ARID3A	chr5:179245825-179246612	HepG2	liver:	n/a	n/a
5	ARID3A	chr5:179228954-179229015	HepG2	liver:	n/a	n/a
6	ARID3A	chr5:179238431-179238489	K562	blood:	n/a	n/a
7	ARID3A	chr5:179247261-179247994	HepG2	liver:	n/a	n/a
8	ARID3A	chr5:179248732-179249164	HepG2	liver:	n/a	n/a
9	ARID3A	chr5:179246045-179246245	K562	blood:	n/a	n/a
10	ARID3A	chr5:179247865-179248166	K562	blood:	n/a	n/a
11	ARID3A	chr5:179233798-179233910	HepG2	liver:	n/a	n/a
12	ATF1	chr5:179245838-179246287	K562	blood:	n/a	n/a
13	ATF2	chr5:179223385-179223971	H1-hESC	embryonic stem cell:	n/a	n/a
14	ATF2	chr5:179247556-179248126	GM12878	blood:	n/a	n/a
15	ATF2	chr5:179223566-179223919	H1-hESC	embryonic stem cell:	n/a	n/a
16	ATF2	chr5:179245799-179246272	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF2	chr5:179222984-179223659	GM12878	blood:	n/a	n/a
18	ATF2	chr5:179248603-179248981	H1-hESC	embryonic stem cell:	n/a	n/a
19	ATF2	chr5:179245665-179246382	GM12878	blood:	n/a	n/a
20	ATF2	chr5:179247715-179248053	GM12878	blood:	n/a	n/a
21	ATF2	chr5:179245831-179246319	GM12878	blood:	n/a	n/a
22	ATF2	chr5:179228820-179229198	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF2	chr5:179245811-179246235	H1-hESC	embryonic stem cell:	n/a	n/a
24	ATF3	chr5:179232903-179233159	K562	blood:	n/a	chr5:179233081-179233090
25	ATF3	chr5:179245797-179246410	A549	lung:	n/a	chr5:179246322-179246331
26	ATF3	chr5:179245828-179246363	A549	lung:	n/a	chr5:179246322-179246331
27	ATF3	chr5:179228750-179229220	A549	lung:	n/a	n/a
28	ATF3	chr5:179223092-179223504	A549	lung:	n/a	n/a
29	ATF3	chr5:179245955-179246291	H1-hESC	embryonic stem cell:	n/a	n/a
30	ATF3	chr5:179245969-179246270	GM12878	blood:	n/a	n/a
31	ATF3	chr5:179247643-179248142	A549	lung:	n/a	chr5:179247812-179247821 chr5:179247852-179247861
32	ATF3	chr5:179245934-179246278	HepG2	liver:	n/a	n/a
33	ATF3	chr5:179245937-179246285	K562	blood:	n/a	n/a
34	ATF3	chr5:179248528-179249230	A549	lung:	n/a	n/a
35	ATF3	chr5:179247834-179248228	K562	blood:	n/a	chr5:179248165-179248179 chr5:179248169-179248180 chr5:179247852-179247861
36	ATF3	chr5:179247575-179248212	A549	lung:	n/a	chr5:179248165-179248179 chr5:179247812-179247821 chr5:179248169-179248180 chr5:179247852-179247861
37	ATF3	chr5:179245922-179246268	K562	blood:	n/a	n/a
38	ATF3	chr5:179245824-179246291	GM12878	blood:	n/a	n/a
39	BACH1	chr5:179222270-179223747	H1-hESC	embryonic stem cell:	n/a	n/a
40	BACH1	chr5:179245605-179248095	H1-hESC	embryonic stem cell:	n/a	chr5:179247551-179247565 chr5:179246583-179246597
41	BACH1	chr5:179249631-179249635	K562	blood:	n/a	n/a
42	BACH1	chr5:179228855-179229127	H1-hESC	embryonic stem cell:	n/a	n/a
43	BACH1	chr5:179245117-179245247	H1-hESC	embryonic stem cell:	n/a	n/a
44	BACH1	chr5:179247989-179248000	K562	blood:	n/a	n/a
45	BACH1	chr5:179243959-179244449	H1-hESC	embryonic stem cell:	n/a	n/a
46	BACH1	chr5:179233933-179234497	H1-hESC	embryonic stem cell:	n/a	n/a
47	BACH1	chr5:179245903-179247768	K562	blood:	n/a	chr5:179247551-179247565 chr5:179246583-179246597
48	BATF	chr5:179246404-179246690	GM12878	blood:	n/a	n/a
49	BATF	chr5:179245901-179246284	GM12878	blood:	n/a	n/a
50	BCL11A	chr5:179245933-179246296	GM12878	blood:	n/a	chr5:179246136-179246145 chr5:179246140-179246153 chr5:179246224-179246237 chr5:179246174-179246183

(count:4092 , 50 per page) page: 1 2 3 4 5 6 7 ... 82

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:179233875-179233925	GM19239	blood:	n/a
2	chr5:179231109-179231159	RPTEC	kidney:	n/a
3	chr5:179223454-179223504	MCF10A-Er-Src	breast:	n/a
4	chr5:179246575-179246625	HCF	heart:	n/a
5	chr5:179243916-179243966	HUVEC	blood vessel:	n/a
6	chr5:179233875-179233925	GM19239	blood:	n/a
7	chr5:179231109-179231159	RPTEC	kidney:	n/a
8	chr5:179223454-179223504	MCF10A-Er-Src	breast:	n/a
9	chr5:179246575-179246625	HCF	heart:	n/a
10	chr5:179243916-179243966	HUVEC	blood vessel:	n/a
11	chr5:179234149-179234199	IMR90	lung:	fetal
12	chr5:179232165-179232215	HNPCEpiC	eye:	n/a
13	chr5:179226009-179226059	HCM	heart:	n/a
14	chr5:179220820-179220870	HUVEC	blood vessel:	n/a
15	chr5:179230866-179230916	HCPEpiC	choroid plexus:	n/a
16	chr5:179220545-179220595	AoSMC	blood vessel:	n/a
17	chr5:179220589-179220639	HCM	heart:	n/a
18	chr5:179224563-179224613	MCF10A-Er-Src	breast:	n/a
19	chr5:179235209-179235259	AG10803	skin:	n/a
20	chr5:179243916-179243966	SK-N-SH	brain:	n/a
21	chr5:179230002-179230052	BE2_C	brain:	n/a
22	chr5:179241969-179242019	PrEC	prostate:	n/a
23	chr5:179222639-179222689	Hela-S3	cervix:	n/a
24	chr5:179230709-179230759	GM12878	blood:	n/a
25	chr5:179224984-179225034	HAEpiC	amniotic membrane:	n/a
26	chr5:179221090-179221140	T-47D	breast:	n/a
27	chr5:179233875-179233925	T-47D	breast:	n/a
28	chr5:179244317-179244367	HepG2	liver:	n/a
29	chr5:179223116-179223166	SKMC	muscle:	n/a
30	chr5:179229353-179229403	A549	lung:	n/a
31	chr5:179247983-179248033	HL-60	blood:	n/a
32	chr5:179225537-179225587	HPAEpiC	pulmonary alveolar:	n/a
33	chr5:179228635-179228685	HCM	heart:	n/a
34	chr5:179222639-179222689	ovcar-3	ovarian:	n/a
35	chr5:179225515-179225565	HCM	heart:	n/a
36	chr5:179232533-179232583	HCT-116	colon:	n/a
37	chr5:179233137-179233187	GM12892	blood:	n/a
38	chr5:179246594-179246644	HCT-116	colon:	n/a
39	chr5:179233856-179233906	HCM	heart:	n/a
40	chr5:179248748-179248798	PrEC	prostate:	n/a
41	chr5:179247688-179247738	K562	blood:	n/a
42	chr5:179239690-179239740	SK-N-MC	brain:	n/a
43	chr5:179244317-179244367	HNPCEpiC	eye:	n/a
44	chr5:179225977-179226027	IMR90	lung:	fetal
45	chr5:179247663-179247713	SKMC	muscle:	n/a
46	chr5:179229353-179229403	HRE	kidney:	n/a
47	chr5:179230709-179230759	H1-hESC	embryonic stem cell:	embryo
48	chr5:179230866-179230916	Hela-S3	cervix:	n/a
49	chr5:179226172-179226222	U87	brain:	n/a
50	chr5:179247603-179247653	HUVEC	blood vessel:	n/a

(count:108 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr5:179124597..179127055-chr5:179246139..179249577,4	MCF-7	breast:
2	chr14:55518268..55519074-chr5:179247805..179248408,2	Hela-S3	cervix:
3	chr5:179047637..179052326-chr5:179245599..179249536,7	K562	blood:
4	chr5:179158923..179161339-chr5:179247308..179249406,2	K562	blood:
5	chr10:120598672..120599438-chr5:179234759..179235474,2	HCT-116	colon:
6	chr3:48487800..48488607-chr5:179233338..179233841,2	Hela-S3	cervix:
7	chr5:179049088..179052063-chr5:179245796..179250145,6	MCF-7	breast:
8	chr5:179232749..179234437-chr5:179284019..179286391,2	K562	blood:
9	chr5:179125840..179127525-chr5:179233336..179235588,2	MCF-7	breast:
10	chr2:208030506..208031117-chr5:179248052..179248703,2	Hela-S3	cervix:
11	chr5:179047278..179052613-chr5:179246048..179251997,13	K562	blood:
12	chr5:179234572..179235304-chr5:179245240..179246114,2	HCT-116	colon:
13	chr5:179159145..179159714-chr5:179223109..179223845,2	MCF-7	breast:
14	chr5:179159426..179161743-chr5:179249637..179251731,2	MCF-7	breast:
15	chr5:179223013..179224914-chr5:180672992..180675408,2	MCF-7	breast:
16	chr5:179124533..179126912-chr5:179247842..179250922,3	K562	blood:
17	chr5:179246564..179250154-chr5:179266751..179272341,6	MCF-7	breast:
18	chr5:179048735..179051281-chr5:179242342..179244613,2	MCF-7	breast:
19	chr5:179249726..179253531-chr5:179284409..179289652,9	K562	blood:
20	chr5:179124982..179127073-chr5:179245665..179248620,3	MCF-7	breast:
21	chr5:179049195..179052432-chr5:179232038..179235083,3	K562	blood:
22	chr5:179189767..179190816-chr5:179222590..179224521,15	MCF-7	breast:
23	chr5:179125163..179127622-chr5:179228110..179231035,2	K562	blood:
24	chr5:179158644..179160831-chr5:179243809..179247207,3	K562	blood:
25	chr5:179123773..179127716-chr5:179220848..179225521,8	MCF-7	breast:
26	chr5:179231951..179234998-chr5:179332268..179335922,5	MCF-7	breast:
27	chr5:179227703..179229883-chr5:179285735..179289127,3	K562	blood:
28	chr5:179049178..179050682-chr5:179227339..179229062,2	MCF-7	breast:
29	chr5:179194648..179196545-chr5:179230223..179233407,4	K562	blood:
30	chr5:179157063..179161797-chr5:179244181..179249709,13	MCF-7	breast:
31	chr3:113415039..113416819-chr5:179245947..179248252,2	MCF-7	breast:
32	chr5:179246365..179250489-chr5:179281961..179288216,8	MCF-7	breast:
33	chr5:179189775..179190581-chr5:179231187..179232028,2	K562	blood:
34	chr5:179125105..179126720-chr5:179232704..179234457,2	MCF-7	breast:
35	chr5:179048743..179051829-chr5:179229515..179233744,4	MCF-7	breast:
36	chr5:179245762..179250347-chr5:179281858..179288397,17	MCF-7	breast:
37	chr5:179157523..179162988-chr5:179219694..179224698,13	MCF-7	breast:
38	chr5:179122850..179128148-chr5:179246584..179249342,5	K562	blood:
39	chr5:179126009..179127718-chr5:179220885..179222493,2	K562	blood:
40	chr5:179049042..179051273-chr5:179225764..179228331,2	MCF-7	breast:
41	chr5:179242122..179245901-chr5:179334184..179337544,4	K562	blood:
42	chr5:179104067..179106595-chr5:179220718..179223236,3	MCF-7	breast:
43	chr5:179247476..179249200-chr5:179334152..179336100,2	K562	blood:
44	chr5:179104088..179107429-chr5:179222108..179224529,3	MCF-7	breast:
45	chr5:179233833..179236734-chr5:179497569..179499660,2	MCF-7	breast:
46	chr5:178975834..178978833-chr5:179245271..179247079,2	K562	blood:
47	chr5:179244299..179249031-chr5:179283718..179288072,6	K562	blood:
48	chr5:179157089..179164271-chr5:179242384..179250347,16	K562	blood:
49	chr5:179197877..179198480-chr5:179223009..179223771,2	MCF-7	breast:
50	chr5:179158179..179161014-chr5:179220671..179223680,5	MCF-7	breast:

(count:13 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LTC4S-2	chr5:179233398-179233591	NONHSAT105629
2	lnc-LTC4S-2	chr5:179238574-179238682	NONHSAT105629
3	lnc-LTC4S-1	chr5:179218765-179220536	NONHSAT105621
4	lnc-C5orf45-4	chr5:179229952-179230030	NONHSAT105628
5	lnc-C5orf45-4	chr5:179229313-179230030	NONHSAT105627
6	lnc-C5orf45-4	chr5:179231941-179232385	NONHSAT105628
7	lnc-LTC4S-2	chr5:179238574-179238682	NONHSAT105630
8	lnc-LTC4S-2	chr5:179239407-179240598	NONHSAT105630
9	lnc-LTC4S-2	chr5:179239407-179240024	NONHSAT105629
10	lnc-C5orf45-4	chr5:179233193-179233305	NONHSAT105627
11	lnc-LTC4S-2	chr5:179238615-179238682	NONHSAT105631
12	lnc-LTC4S-2	chr5:179234324-179235427	NONHSAT105630
13	lnc-LTC4S-2	chr5:179238988-179240641	NONHSAT105631

miRNA name	Chromosome Location	mirBase accession
hsa-miR-1229-5p	chr5:179225323-179225346	MIMAT0022942
hsa-miR-1229-3p	chr5:179225278-179225300	MIMAT0005584

No data

Variant related genes	Relation type
LTC4S	TF binding region
SQSTM1	TF binding region
MGAT4B	TF binding region
MIR1229	TF binding region
LTC4S	CpG island
SQSTM1	CpG island
MGAT4B	CpG island
MIR1229	CpG island
ENSG00000204628	chromatin interactions
ENSG00000233937	chromatin interactions
ENSG00000171940	chromatin interactions
ENSG00000255242	chromatin interactions
ENSG00000161021	chromatin interactions
ENSG00000272426	chromatin interactions
ENSG00000259088	chromatin interactions
ENSG00000100316	chromatin interactions
ENSG00000164053	chromatin interactions
ENSG00000270022	chromatin interactions
ENSG00000257696	chromatin interactions
ENSG00000170468	chromatin interactions
ENSG00000197226	chromatin interactions
ENSG00000161013	chromatin interactions
ENSG00000239705	chromatin interactions
ENSG00000113269	chromatin interactions
ENSG00000100227	chromatin interactions
ENSG00000161010	chromatin interactions
ENSG00000078304	chromatin interactions
ENSG00000168175	chromatin interactions
ENSG00000127022	chromatin interactions
ENSG00000225051	chromatin interactions
ENSG00000196950	chromatin interactions
ENSG00000111647	chromatin interactions
ENSG00000137409	chromatin interactions
ENSG00000110321	chromatin interactions
ENSG00000176783	chromatin interactions
ENSG00000197451	chromatin interactions
ENSG00000118263	chromatin interactions
ENSG00000169045	chromatin interactions
ENSG00000167965	chromatin interactions
ENSG00000044574	chromatin interactions
ENSG00000245317	chromatin interactions
ENSG00000176542	chromatin interactions
ENSG00000252958	chromatin interactions
ENSG00000244380	chromatin interactions
ENSG00000201558	chromatin interactions
ENSG00000161011	chromatin interactions
ENSG00000233396	chromatin interactions
KDM5C	Mature miRNA region
SLC16A13	Mature miRNA region
NAA50	Mature miRNA region
MAPKAPK2	Mature miRNA region
ITGA5	Mature miRNA region
PHGDH	Mature miRNA region
RPS15	Mature miRNA region
TNRC6B	Mature miRNA region
RPL7A	Mature miRNA region
SAE1	Mature miRNA region
EIF4G2	Mature miRNA region
PHRF1	Mature miRNA region
AIF1L	Mature miRNA region
FOXP1	Mature miRNA region
NEU3	Mature miRNA region
HIST1H3G	Mature miRNA region
SCD	Mature miRNA region
TUBA1B	Mature miRNA region
ARL6IP1	Mature miRNA region
ACOT7	Mature miRNA region
NXPE3	Mature miRNA region
NF2	Mature miRNA region
YWHAZ	Mature miRNA region
STAT5B	Mature miRNA region
ALS2	Mature miRNA region
PPP6R1	Mature miRNA region
TUSC3	Mature miRNA region
HNRNPA3	Mature miRNA region
PBRM1	Mature miRNA region
SUPT5H	Mature miRNA region
SNX12	Mature miRNA region
DCTD	Mature miRNA region
EPB41L2	Mature miRNA region
NUP210	Mature miRNA region
EEF2	Mature miRNA region
DDX23	Mature miRNA region
KRT28	Mature miRNA region
C19orf10	Mature miRNA region
ACLY	Mature miRNA region
ZNF264	Mature miRNA region
KIF24	Mature miRNA region
PSMC5	Mature miRNA region
HYPK	Mature miRNA region
SCAMP5	Mature miRNA region
RUVBL2	Mature miRNA region
SRCAP	Mature miRNA region
PRDX4	Mature miRNA region
ZNF687	Mature miRNA region
DCAF7	Mature miRNA region
PAK4	Mature miRNA region
AHCYL1	Mature miRNA region
ATP5A1	Mature miRNA region
PRKRIP1	Mature miRNA region
PPP4C	Mature miRNA region
CEP350	Mature miRNA region
ZMYM2	Mature miRNA region
RPL3	Mature miRNA region
TUBG1	Mature miRNA region
ABCC5	Mature miRNA region
CEP55	Mature miRNA region
TSC22D3	Mature miRNA region
PITPNB	Mature miRNA region
DAG1	Mature miRNA region
CTNND1	Mature miRNA region
POLR2D	Mature miRNA region
CDKN1A	Mature miRNA region
BRD2	Mature miRNA region
RNF40	Mature miRNA region
EML1	Mature miRNA region
SIK2	Mature miRNA region
CTCF	Mature miRNA region
C9orf114	Mature miRNA region
PHC1	Mature miRNA region
SRP72	Mature miRNA region
CDC42EP4	Mature miRNA region
CLSTN3	Mature miRNA region
GAPDH	Mature miRNA region
INO80D	Mature miRNA region
PTBP3	Mature miRNA region
HNRNPA1	Mature miRNA region
FEN1	Mature miRNA region
CEP152	Mature miRNA region
HADHB	Mature miRNA region
RPGRIP1L	Mature miRNA region
CSDE1	Mature miRNA region
CHCHD2	Mature miRNA region
MDK	Mature miRNA region
PTPRF	Mature miRNA region
ADPRHL2	Mature miRNA region
ERC1	Mature miRNA region
TRRAP	Mature miRNA region
OPA3	Mature miRNA region
NAPEPLD	Mature miRNA region
CRISP3	Mature miRNA region
KPNB1	Mature miRNA region
MED19	Mature miRNA region
LRIT1	Mature miRNA region
CTNNBL1	Mature miRNA region
TIA1	Mature miRNA region
TARDBP	Mature miRNA region
NME2	Mature miRNA region
OTUD7B	Mature miRNA region
CPNE1	Mature miRNA region
PHF8	Mature miRNA region
CDIPT	Mature miRNA region
SAFB	Mature miRNA region
SFPQ	Mature miRNA region
ZDHHC7	Mature miRNA region
CTDNEP1	Mature miRNA region
GPI	Mature miRNA region
BET1L	Mature miRNA region
BAP1	Mature miRNA region
HNRNPD	Mature miRNA region
C2orf44	Mature miRNA region
IGF2BP1	Mature miRNA region
SORBS3	Mature miRNA region
LRBA	Mature miRNA region
GTF2I	Mature miRNA region
KMT2D	Mature miRNA region
KCTD15	Mature miRNA region
REXO2	Mature miRNA region
CPT1B	Mature miRNA region
COIL	Mature miRNA region
SLC39A7	Mature miRNA region
INTS10	Mature miRNA region
MAD2L2	Mature miRNA region
FMNL2	Mature miRNA region
LDOC1L	Mature miRNA region
HIST4H4	Mature miRNA region
AP2M1	Mature miRNA region
MPP2	Mature miRNA region
FOXK1	Mature miRNA region
HNRNPUL1	Mature miRNA region
VWA8	Mature miRNA region

Extended variants
information (count: 1471 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:1471 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3776944	chr5:179220010-179220011	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs35643466	chr5:179220014-179220015	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
3	rs544805951	chr5:179220035-179220036	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
4	rs187337162	chr5:179220077-179220078	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
5	rs73349925	chr5:179220102-179220103	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs77590779	chr5:179220104-179220105	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
7	rs191716896	chr5:179220138-179220139	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
8	rs527657015	chr5:179220142-179220143	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
9	rs76018357	chr5:179220407-179220408	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
10	rs564387771	chr5:179220416-179220417	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs112139437	chr5:179220417-179220418	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
12	rs531534413	chr5:179220443-179220444	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
13	rs549560929	chr5:179220444-179220445	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
14	rs183808429	chr5:179220450-179220451	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
15	rs530253890	chr5:179220474-179220475	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
16	rs529065064	chr5:179220475-179220476	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
17	rs145247560	chr5:179220502-179220503	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
18	rs565662356	chr5:179220545-179220546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs149149685	chr5:179220590-179220591	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs730012	chr5:179220638-179220639	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs571103937	chr5:179220671-179220672	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs538587613	chr5:179220680-179220681	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs561599193	chr5:179220761-179220762	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
24	rs556904129	chr5:179220766-179220767	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
25	rs143548537	chr5:179220795-179220796	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
26	rs536074458	chr5:179220843-179220844	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
27	rs371036839	chr5:179220882-179220883	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
28	rs146880351	chr5:179220890-179220891	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
29	rs140697852	chr5:179220914-179220915	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs546157038	chr5:179220966-179220967	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs28365147	chr5:179220977-179220978	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs547041461	chr5:179221001-179221002	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs575923141	chr5:179221016-179221017	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs543273391	chr5:179221022-179221023	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs28365148	chr5:179221031-179221032	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs564093147	chr5:179221043-179221044	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs369543970	chr5:179221060-179221061	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs200261371	chr5:179221062-179221063	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs373563671	chr5:179221072-179221073	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs376998290	chr5:179221076-179221077	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs370555009	chr5:179221091-179221092	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs146614595	chr5:179221102-179221103	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs75759006	chr5:179221105-179221106	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs140301841	chr5:179221116-179221117	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs369783912	chr5:179221130-179221131	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs523487	chr5:179221149-179221150	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs141041263	chr5:179221179-179221180	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs524372	chr5:179221206-179221207	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
49	rs524308	chr5:179221223-179221224	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
50	rs188234584	chr5:179221272-179221273	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Glioma	20126413	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Thyroid cancer	19087340	CNVD
Acute myeloid leukemia	20729466	CNVD
lymphocytic leukemia	21291569	CNVD
Multiple myeloma	17550852	CNVD
Salivary gland tumor	18059337	CNVD
Renal cell carcinoma	19377443	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Renal cell carcinoma	18592004	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Prostate cancer	18632612	CNVD
epilepsy	18472482	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Sotos syndrome	21572526	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Sotos syndrome	17561922	CNVD
Sotos syndrome	16773131	CNVD
Mental retardation	16773131	CNVD
Sotos syndrome	22470819	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Acute myeloid leukemia	18000384	CNVD
Sudden cardiac death	19188705	CNVD
Basal cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Lung cancer	17297452	CNVD
Cancer	20164920	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21804112	CNVD
Myelofibrosis	22110671	CNVD
Sotos syndrome	22283845	CNVD
Breast cancer	16272173	CNVD
Sotos syndrome	20503325	CNVD
Lung adenocarcinoma	17086460	CNVD
Congenital Hypertrichosis Syndrome	21636067	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	19181860	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ehlers-danlos syndrome	17576883	CNVD
Lung cancer	17086460	CNVD
Autism	19246517	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Autism	20808228	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:3181 , 50 per page) page: 1 2 3 4 5 6 7 ... 64

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179202000-179221800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:179203400-179221600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:179203600-179220400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:179203600-179222000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:179204000-179221200	Weak transcription	Small Intestine	intestine
6	chr5:179205200-179220600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:179205200-179221800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:179206000-179220200	Weak transcription	Ovary	ovary
9	chr5:179207000-179220200	Weak transcription	GM12878-XiMat	blood
10	chr5:179207200-179220600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr5:179207400-179221000	Weak transcription	Brain Substantia Nigra	brain
12	chr5:179207600-179220200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:179207600-179220200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:179207600-179220200	Weak transcription	Pancreas	Pancrea
15	chr5:179207600-179220600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr5:179207600-179220800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr5:179207600-179221200	Weak transcription	Fetal Intestine Large	intestine
18	chr5:179207600-179222200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:179207600-179222600	Weak transcription	Aorta	Aorta
20	chr5:179207800-179220200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr5:179207800-179220200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:179207800-179220400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr5:179207800-179220400	Weak transcription	Brain Angular Gyrus	brain
24	chr5:179207800-179220400	Weak transcription	HSMM	muscle
25	chr5:179207800-179220600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr5:179207800-179222200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:179208000-179220200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr5:179208000-179220200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:179208000-179220400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr5:179208000-179220600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr5:179209000-179220400	Weak transcription	Brain Anterior Caudate	brain
32	chr5:179209000-179220800	Weak transcription	Dnd41	blood
33	chr5:179209400-179222200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:179209600-179220400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr5:179209600-179221600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr5:179209800-179220200	Weak transcription	Primary T cells from cord blood	blood
37	chr5:179215600-179221200	Weak transcription	Thymus	Thymus
38	chr5:179215600-179223200	Weak transcription	HSMMtube	muscle
39	chr5:179218200-179220200	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr5:179218200-179220400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:179218200-179220600	Enhancers	Primary hematopoietic stem cells	blood
42	chr5:179218400-179220200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr5:179218600-179221000	Enhancers	Fetal Muscle Leg	muscle
44	chr5:179218600-179221600	Enhancers	Placenta	Placenta
45	chr5:179218600-179222800	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr5:179218800-179220200	Strong transcription	Brain Germinal Matrix	brain
47	chr5:179218800-179220400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr5:179218800-179220600	Enhancers	Adipose Nuclei	Adipose
49	chr5:179218800-179220600	Enhancers	Left Ventricle	heart
50	chr5:179218800-179221000	Enhancers	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links