Variant report

Variant	nsv883454
Chromosome Location	chr6:15009137-15081252
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:165)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:165 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr6:15079757..15081903-chr6:15244984..15246954,3	MCF-7	breast:
2	chr6:15061827..15065588-chr6:15088079..15090831,5	K562	blood:
3	chr6:14733042..14733782-chr6:15065557..15066524,2	MCF-7	breast:
4	chr6:15036573..15037734-chr6:15089983..15091047,16	MCF-7	breast:
5	chr6:14881770..14884048-chr6:15014899..15017508,2	K562	blood:
6	chr6:15036807..15037626-chr6:15065967..15066594,2	MCF-7	breast:
7	chr6:15039064..15039957-chr6:15078965..15079525,2	MCF-7	breast:
8	chr6:15044233..15047661-chr6:15048206..15054228,7	K562	blood:
9	chr6:15015675..15017325-chr6:15020820..15023601,2	MCF-7	breast:
10	chr6:15061217..15063202-chr6:15248037..15250176,2	MCF-7	breast:
11	chr6:15045609..15048317-chr6:15050258..15052643,2	MCF-7	breast:
12	chr6:14733830..14736218-chr6:15031394..15034242,2	MCF-7	breast:
13	chr6:15069299..15075541-chr6:15075577..15080851,9	K562	blood:
14	chr6:15069314..15074049-chr6:15088016..15092585,9	MCF-7	breast:
15	chr6:15036577..15037681-chr6:15221695..15222858,47	MCF-7	breast:
16	chr6:15070832..15073005-chr6:15078564..15081047,2	MCF-7	breast:
17	chr6:14737129..14739512-chr6:15065575..15068395,2	MCF-7	breast:
18	chr6:14952333..14954050-chr6:15035656..15038641,2	MCF-7	breast:
19	chr17:65373335..65375372-chr6:15035832..15038748,2	MCF-7	breast:
20	chr6:15032721..15034592-chr6:15088700..15090551,2	MCF-7	breast:
21	chr6:15035505..15037556-chr6:15039811..15042052,2	MCF-7	breast:
22	chr6:15045470..15047260-chr6:15051522..15053557,2	K562	blood:
23	chr6:15065449..15068780-chr6:15072645..15074662,4	K562	blood:
24	chr6:15037035..15037728-chr6:15065975..15066508,2	MCF-7	breast:
25	chr6:15058764..15061623-chr6:15064836..15067219,2	K562	blood:
26	chr6:15071613..15074171-chr6:15076318..15078190,2	K562	blood:
27	chr6:15045470..15047260-chr6:15051522..15053557,2	K562	blood:
28	chr6:15063509..15068597-chr6:15242568..15250230,12	MCF-7	breast:
29	chr6:15074695..15078360-chr6:15082005..15084184,3	MCF-7	breast:
30	chr6:15022607..15023116-chr6:15036750..15037271,2	MCF-7	breast:
31	chr6:15016388..15019055-chr6:15245142..15248397,3	K562	blood:
32	chr6:15045609..15048317-chr6:15050258..15052643,2	MCF-7	breast:
33	chr6:15021072..15024779-chr6:15089168..15092500,5	MCF-7	breast:
34	chr6:15036618..15037814-chr6:15222040..15222792,3	MCF-7	breast:
35	chr6:15039914..15042274-chr6:15044507..15046690,2	K562	blood:
36	chr6:15001971..15005699-chr6:15012973..15016102,3	MCF-7	breast:
37	chr6:15041781..15043639-chr6:15045278..15047860,2	MCF-7	breast:
38	chr6:15069954..15071516-chr6:15106946..15109346,2	K562	blood:
39	chr6:15074593..15076383-chr6:15083206..15084995,2	MCF-7	breast:
40	chr6:15036656..15037616-chr6:15251384..15252228,3	MCF-7	breast:
41	chr6:14889597..14891990-chr6:15061362..15063428,2	K562	blood:
42	chr6:15078226..15082089-chr6:15082411..15086924,5	K562	blood:
43	chr6:15016833..15019664-chr6:15022406..15025151,2	K562	blood:
44	chr6:15014025..15014906-chr6:15036946..15037491,2	MCF-7	breast:
45	chr6:15014025..15014906-chr6:15036946..15037491,2	MCF-7	breast:
46	chr6:15028717..15030256-chr6:15247473..15249363,2	K562	blood:
47	chr6:15065797..15068754-chr6:15078887..15080835,2	MCF-7	breast:
48	chr6:15023544..15025771-chr6:15064823..15066646,2	MCF-7	breast:
49	chr6:15070190..15074230-chr6:15074491..15076843,3	MCF-7	breast:
50	chr6:15078912..15079462-chr6:15221859..15222426,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTNBP1-5	chr6:15079863-15080064	NONHSAT107859
2	lnc-DTNBP1-5	chr6:15053131-15053417	NONHSAT107859
3	lnc-DTNBP1-5	chr6:15009156-15009315	NONHSAT107859
4	lnc-DTNBP1-5	chr6:15022047-15022238	NONHSAT107859
5	lnc-DTNBP1-5	chr6:15079865-15080062	XLOC_005618

No data

Variant related genes	Relation type
ENSG00000235488	chromatin interactions
ENSG00000234261	chromatin interactions
ENSG00000154217	chromatin interactions
ENSG00000008083	chromatin interactions
ENSG00000271888	chromatin interactions
SYPL1	miRNA target sites

Extended variants
information (count: 2954 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:2954 , 50 per page) page: 1 2 3 4 5 6 7 ... 60

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs724626	chr6:15009137-15009138	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs531557420	chr6:15009138-15009139	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs147568368	chr6:15009250-15009251	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs113767021	chr6:15009292-15009293	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs540271255	chr6:15009319-15009320	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs369492195	chr6:15009346-15009347	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs559848695	chr6:15009373-15009374	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs373486575	chr6:15009391-15009392	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs9383008	chr6:15009447-15009448	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs370160145	chr6:15009483-15009484	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs547175294	chr6:15009520-15009521	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs145541186	chr6:15009531-15009532	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs186322527	chr6:15009545-15009546	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs551143818	chr6:15009549-15009550	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs9476707	chr6:15009600-15009601	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs34325157	chr6:15009630-15009631	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs527576139	chr6:15009665-15009666	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs539451952	chr6:15009697-15009698	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs566710077	chr6:15009716-15009717	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs535957439	chr6:15009729-15009730	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs7770884	chr6:15009772-15009773	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs527487446	chr6:15009804-15009805	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs538483118	chr6:15009805-15009806	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs558382581	chr6:15009848-15009849	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs578251134	chr6:15009853-15009854	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs547587717	chr6:15009881-15009882	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs143281465	chr6:15009888-15009889	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs199667860	chr6:15009891-15009892	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs553745590	chr6:15009892-15009893	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs573529557	chr6:15009894-15009895	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs146824623	chr6:15009896-15009897	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs570469831	chr6:15009902-15009903	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs190866595	chr6:15009908-15009909	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs552684787	chr6:15010040-15010041	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs544849612	chr6:15010055-15010056	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs140622228	chr6:15010072-15010073	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs556478669	chr6:15010118-15010119	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs527588426	chr6:15010124-15010125	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs145619382	chr6:15010125-15010126	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs560554169	chr6:15010154-15010155	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs529307170	chr6:15010165-15010166	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs182611915	chr6:15010171-15010172	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs927627	chr6:15010184-15010185	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs927628	chr6:15010230-15010231	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs188014329	chr6:15010231-15010232	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs191413211	chr6:15010284-15010285	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs141973141	chr6:15010338-15010339	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs549539311	chr6:15010395-15010396	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs554195892	chr6:15010435-15010436	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs113715078	chr6:15010460-15010461	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
small cell lung cancer	20016488	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Osteosarcoma	16790693	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Ovarian cancer	21720365	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Bladder cancer	21909424	CNVD
Burkitt''s lymphoma	19759907	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
abnormal development	18461090	CNVD
Cancer	16790693	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21785460	CNVD

Chromatin state (count:972 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14986600-15018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15001800-15009200	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:15002800-15009600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:15003600-15009200	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:15003800-15009200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:15005200-15009200	Strong transcription	H1 Cell Line	embryonic stem cell
7	chr6:15005800-15009200	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:15006000-15009200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:15006400-15009200	Strong transcription	H9 Cell Line	embryonic stem cell
10	chr6:15006400-15009200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:15006600-15009200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:15006600-15009200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:15007600-15013200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:15009200-15012800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:15009200-15013800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:15009200-15016000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:15009200-15016800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:15009200-15017000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:15009200-15017200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:15009200-15017200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:15009200-15017600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr6:15009200-15017600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:15009200-15017600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:15009600-15010600	Enhancers	Primary B cells from cord blood	blood
25	chr6:15009600-15010600	Enhancers	Primary B cells from peripheral blood	blood
26	chr6:15009600-15013000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:15009800-15010200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:15009800-15010600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr6:15010000-15010200	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr6:15010400-15011400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr6:15010600-15011400	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr6:15010600-15011600	Weak transcription	Primary B cells from cord blood	blood
33	chr6:15011400-15012000	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr6:15011400-15012000	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr6:15011600-15011800	Enhancers	Primary B cells from cord blood	blood
36	chr6:15011800-15012000	Weak transcription	Primary B cells from cord blood	blood
37	chr6:15012000-15014400	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr6:15012000-15014600	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr6:15012800-15013400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
40	chr6:15013000-15013400	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:15013200-15013400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr6:15013400-15013800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr6:15013400-15015400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:15013400-15017400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:15013400-15017600	Weak transcription	Small Intestine	intestine
46	chr6:15013800-15014000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
47	chr6:15013800-15014000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr6:15014000-15017200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr6:15014000-15017800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr6:15014400-15015400	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links