Variant report

Variant	nsv883494
Chromosome Location	chr6:26367833-26442786
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1647)
CpG islands
(count:1835)
Chromatin interactive
region (count:142)
LncRNA
region (count:28)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:1647 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:26388282-26388592	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:26440421-26441008	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:26421284-26421894	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:26379721-26379968	K562	blood:	n/a	n/a
5	ARID3A	chr6:26372942-26373010	K562	blood:	n/a	n/a
6	ARID3A	chr6:26383245-26383472	HepG2	liver:	n/a	n/a
7	ARID3A	chr6:26440731-26440735	K562	blood:	n/a	n/a
8	ARID3A	chr6:26389651-26389753	K562	blood:	n/a	n/a
9	ARID3A	chr6:26420913-26421058	HepG2	liver:	n/a	n/a
10	ATF1	chr6:26384288-26384605	K562	blood:	n/a	n/a
11	ATF1	chr6:26440527-26440834	K562	blood:	n/a	n/a
12	ATF1	chr6:26421413-26421823	K562	blood:	n/a	n/a
13	ATF1	chr6:26389555-26389824	K562	blood:	n/a	n/a
14	ATF1	chr6:26383091-26383465	K562	blood:	n/a	n/a
15	ATF1	chr6:26379681-26379920	K562	blood:	n/a	n/a
16	ATF1	chr6:26402234-26402914	K562	blood:	n/a	n/a
17	ATF1	chr6:26420969-26421083	K562	blood:	n/a	n/a
18	ATF3	chr6:26389548-26389958	K562	blood:	n/a	n/a
19	ATF3	chr6:26384220-26384567	K562	blood:	n/a	n/a
20	BACH1	chr6:26427881-26427892	H1-hESC	embryonic stem cell:	n/a	n/a
21	BACH1	chr6:26409530-26409809	H1-hESC	embryonic stem cell:	n/a	n/a
22	BACH1	chr6:26427660-26427966	K562	blood:	n/a	n/a
23	BACH1	chr6:26421609-26422083	H1-hESC	embryonic stem cell:	n/a	n/a
24	BATF	chr6:26393290-26393652	GM12878	blood:	n/a	n/a
25	BATF	chr6:26398309-26398646	GM12878	blood:	n/a	chr6:26398493-26398504 chr6:26398513-26398524
26	BATF	chr6:26378427-26378675	GM12878	blood:	n/a	n/a
27	BHLHE40	chr6:26372951-26372953	K562	blood:	n/a	n/a
28	BHLHE40	chr6:26421500-26421909	K562	blood:	n/a	n/a
29	BHLHE40	chr6:26440473-26441150	GM12878	blood:	n/a	n/a
30	BHLHE40	chr6:26421365-26421819	GM12878	blood:	n/a	n/a
31	BHLHE40	chr6:26383196-26383520	HepG2	liver:	n/a	n/a
32	BHLHE40	chr6:26402290-26402595	GM12878	blood:	n/a	n/a
33	BHLHE40	chr6:26383051-26383475	GM12878	blood:	n/a	n/a
34	BHLHE40	chr6:26432223-26432270	K562	blood:	n/a	n/a
35	BHLHE40	chr6:26402305-26402843	K562	blood:	n/a	n/a
36	BHLHE40	chr6:26389616-26389894	K562	blood:	n/a	n/a
37	BHLHE40	chr6:26400981-26401160	K562	blood:	n/a	n/a
38	BHLHE40	chr6:26414549-26414897	K562	blood:	n/a	n/a
39	BHLHE40	chr6:26402307-26402786	HepG2	liver:	n/a	n/a
40	BHLHE40	chr6:26440568-26440767	K562	blood:	n/a	n/a
41	BHLHE40	chr6:26385594-26385771	GM12878	blood:	n/a	n/a
42	BHLHE40	chr6:26383124-26383727	K562	blood:	n/a	n/a
43	BRCA1	chr6:26383338-26383539	GM12878	blood:	n/a	n/a
44	BRCA1	chr6:26383156-26383464	Hela-S3	cervix:	n/a	n/a
45	BRCA1	chr6:26421510-26421877	HepG2	liver:	n/a	n/a
46	BRCA1	chr6:26421514-26421947	H1-hESC	embryonic stem cell:	n/a	n/a
47	BRCA1	chr6:26383197-26383433	HepG2	liver:	n/a	n/a
48	BRCA1	chr6:26421387-26421913	Hela-S3	cervix:	n/a	n/a
49	BRCA1	chr6:26383245-26383595	H1-hESC	embryonic stem cell:	n/a	n/a
50	BRCA1	chr6:26440558-26440819	Hela-S3	cervix:	n/a	n/a

(count:1835 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26382817-26382867	AG10803	skin:	n/a
2	chr6:26402776-26402826	AG10803	skin:	n/a
3	chr6:26421490-26421540	HEEpiC	esophagus:	n/a
4	chr6:26383673-26383723	ProgFib	skin:	n/a
5	chr6:26386191-26386241	MCF10A-Er-Src	breast:	n/a
6	chr6:26382817-26382867	AG10803	skin:	n/a
7	chr6:26402776-26402826	AG10803	skin:	n/a
8	chr6:26421490-26421540	HEEpiC	esophagus:	n/a
9	chr6:26383673-26383723	ProgFib	skin:	n/a
10	chr6:26386191-26386241	MCF10A-Er-Src	breast:	n/a
11	chr6:26440610-26440660	K562	blood:	n/a
12	chr6:26401793-26401843	MCF-7	breast:	n/a
13	chr6:26383673-26383723	HCPEpiC	choroid plexus:	n/a
14	chr6:26407505-26407555	A549	lung:	n/a
15	chr6:26383374-26383424	AoSMC	blood vessel:	n/a
16	chr6:26422779-26422829	A549	lung:	n/a
17	chr6:26420759-26420809	PANC-1	pancreas:	n/a
18	chr6:26442290-26442340	HCF	heart:	n/a
19	chr6:26415234-26415284	HIPEpiC	eye:	n/a
20	chr6:26415234-26415284	GM12891	blood:	n/a
21	chr6:26421490-26421540	HRE	kidney:	n/a
22	chr6:26383297-26383347	GM12892	blood:	n/a
23	chr6:26421791-26421841	CMK	blood:	n/a
24	chr6:26402310-26402360	NB4	blood:	n/a
25	chr6:26421598-26421648	A549	lung:	n/a
26	chr6:26383297-26383347	HEEpiC	esophagus:	n/a
27	chr6:26393253-26393303	ovcar-3	ovarian:	n/a
28	chr6:26421570-26421620	HMEC	breast:	n/a
29	chr6:26421791-26421841	NHDF-neo	bronchial:	n/a
30	chr6:26401793-26401843	SAEC	small airway:	n/a
31	chr6:26421598-26421648	NT2-D1	testis:	n/a
32	chr6:26401691-26401741	ovcar-3	ovarian:	n/a
33	chr6:26375990-26376040	ProgFib	skin:	n/a
34	chr6:26421791-26421841	H1-hESC	embryonic stem cell:	embryo
35	chr6:26383673-26383723	HRCEpiC	kidney:	n/a
36	chr6:26383004-26383054	AG09319	gingival:	n/a
37	chr6:26383004-26383054	H1-hESC	embryonic stem cell:	embryo
38	chr6:26421231-26421281	BE2_C	brain:	n/a
39	chr6:26421570-26421620	NHDF-neo	bronchial:	n/a
40	chr6:26383297-26383347	HCT-116	colon:	n/a
41	chr6:26442290-26442340	HAEpiC	amniotic membrane:	n/a
42	chr6:26421120-26421170	PANC-1	pancreas:	n/a
43	chr6:26401691-26401741	LNCaP	prostate:	n/a
44	chr6:26402776-26402826	HPAEpiC	pulmonary alveolar:	n/a
45	chr6:26420759-26420809	HepG2	liver:	n/a
46	chr6:26402776-26402826	AG04449	skin:	fetal
47	chr6:26442290-26442340	MCF-7	breast:	n/a
48	chr6:26383297-26383347	BJ	skin:	n/a
49	chr6:26422779-26422829	GM12892	blood:	n/a
50	chr6:26420759-26420809	HAEpiC	amniotic membrane:	n/a

(count:142 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr6:26158092..26160722-chr6:26391626..26394367,2	MCF-7	breast:
2	chr6:26378930..26384775-chr6:26385231..26390850,8	MCF-7	breast:
3	chr6:26397216..26399740-chr6:26407400..26409263,3	K562	blood:
4	chr6:26204630..26206245-chr6:26437360..26439322,2	K562	blood:
5	chr6:26403327..26405922-chr6:26411445..26413266,2	K562	blood:
6	chr6:26365087..26367638-chr6:26438423..26440461,2	K562	blood:
7	chr6:26432568..26435135-chr6:26469851..26472610,2	K562	blood:
8	chr6:26403327..26405922-chr6:26411445..26413266,2	K562	blood:
9	chr6:26383299..26384986-chr6:26520070..26522600,2	K562	blood:
10	chr6:26402744..26404382-chr6:26575217..26577628,2	K562	blood:
11	chr6:26421705..26424532-chr6:26436910..26439772,3	MCF-7	breast:
12	chr6:26378930..26384775-chr6:26385231..26390850,8	MCF-7	breast:
13	chr6:26363140..26366680-chr6:26382117..26385194,3	MCF-7	breast:
14	chr6:26055082..26056690-chr6:26399620..26401268,2	K562	blood:
15	chr6:26158606..26161579-chr6:26427700..26429391,2	K562	blood:
16	chr6:26203411..26206130-chr6:26436411..26439322,2	K562	blood:
17	chr6:26283237..26286235-chr6:26387862..26389996,2	K562	blood:
18	chr6:26380688..26382359-chr6:26523846..26526048,2	K562	blood:
19	chr6:26410362..26412070-chr6:26433170..26434704,2	K562	blood:
20	chr6:26391021..26393717-chr6:26396965..26399290,2	K562	blood:
21	chr6:26386609..26388143-chr6:26388160..26389725,2	K562	blood:
22	chr6:26188276..26190980-chr6:26381179..26383865,2	K562	blood:
23	chr6:26373307..26375855-chr6:26376435..26379484,4	K562	blood:
24	chr6:26433270..26434795-chr6:26457086..26458602,2	MCF-7	breast:
25	chr6:26395411..26398038-chr6:26426386..26428479,2	K562	blood:
26	chr6:26412544..26414571-chr6:26420012..26422534,3	K562	blood:
27	chr6:26435741..26437513-chr6:26437862..26439731,2	MCF-7	breast:
28	chr6:26385663..26388143-chr6:26388160..26389788,2	K562	blood:
29	chr6:26158283..26160740-chr6:26434619..26436280,2	K562	blood:
30	chr6:26272264..26273819-chr6:26411015..26413728,2	MCF-7	breast:
31	chr6:26402136..26404045-chr6:26429217..26430789,2	K562	blood:
32	chr6:26436944..26439158-chr6:26458061..26459676,2	MCF-7	breast:
33	chr6:26193666..26195814-chr6:26420014..26422966,2	K562	blood:
34	chr6:26389060..26391838-chr6:26394516..26396204,2	K562	blood:
35	chr6:26386746..26389506-chr6:27100599..27103516,2	K562	blood:
36	chr6:26431968..26434782-chr6:26519398..26522131,2	MCF-7	breast:
37	chr6:26341837..26342412-chr6:26411698..26412292,2	MCF-7	breast:
38	chr6:26435741..26437513-chr6:26437862..26439731,2	MCF-7	breast:
39	chr6:26214242..26217206-chr6:26413711..26415267,2	K562	blood:
40	chr6:26376258..26380187-chr6:26381333..26383262,3	K562	blood:
41	chr6:26409096..26410652-chr6:26411052..26413103,2	K562	blood:
42	chr6:26373111..26374832-chr6:26379026..26381530,2	MCF-7	breast:
43	chr6:26395454..26397277-chr6:26501383..26504153,2	K562	blood:
44	chr6:26419994..26421593-chr6:26434253..26437135,2	K562	blood:
45	chr6:26365252..26366783-chr6:26384022..26386049,2	K562	blood:
46	chr6:26382380..26384957-chr6:26398631..26401172,3	K562	blood:
47	chr6:26391021..26393717-chr6:26396965..26399290,2	K562	blood:
48	chr6:26390334..26392111-chr6:26392874..26394423,2	K562	blood:
49	chr6:26362234..26364309-chr6:26410277..26412963,2	K562	blood:
50	chr6:26341882..26342492-chr6:26420774..26421520,2	MCF-7	breast:

(count:28 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BTN3A1-1	chr6:26426410-26426751	NONHSAT108279
2	lnc-BTN2A2-4	chr6:26410122-26410260	NONHSAT108277
3	lnc-BTN3A2-2	chr6:26369579-26370215	l_3140_chr6:26360287-26370215_whiteBloodCell
4	lnc-BTN2A2-4	chr6:26409773-26409961	NONHSAT108277
5	lnc-BTN3A3-1	chr6:26439934-26440114	l_3143_chr6:26439933-26448332_testes
6	lnc-BTN2A1-3	chr6:26440738-26440876	NONHSAT108281
7	lnc-HIST1H4H-4	chr6:26432915-26433370	l_3142_chr6:26432914-26440114_testes
8	lnc-BTN2A2-4	chr6:26411337-26411363	NONHSAT108277
9	lnc-BTN2A2-2	chr6:26374555-26374601	NONHSAT108273
10	lnc-BTN2A2-2	chr6:26370653-26370831	NONHSAT108273
11	lnc-BTN2A2-4	chr6:26409811-26409961	NONHSAT108278
12	lnc-BTN2A2-4	chr6:26411337-26411363	NONHSAT108278
13	lnc-BTN2A2-4	chr6:26410122-26410260	NONHSAT108278
14	lnc-BTN3A1-1	chr6:26423780-26423987	NONHSAT108279
15	lnc-BTN2A2-1	chr6:26404363-26404783	NONHSAT108276
16	lnc-BTN2A2-2	chr6:26374999-26375036	NONHSAT108273
17	lnc-BTN3A3-1	chr6:26442281-26442343	l_3143_chr6:26439933-26448332_testes
18	lnc-HIST1H4H-4	chr6:26439934-26440114	l_3142_chr6:26432914-26440114_testes
19	lnc-BTN2A2-1	chr6:26402478-26402640	NONHSAT108276
20	lnc-BTN2A2-4	chr6:26411783-26413230	NONHSAT108278
21	lnc-BTN2A2-2	chr6:26373504-26373641	NONHSAT108273
22	lnc-BTN3A1-1	chr6:26428871-26428899	NONHSAT108279
23	lnc-HIST1H4H-4	chr6:26437217-26437294	l_3142_chr6:26432914-26440114_testes
24	lnc-BTN2A2-2	chr6:26372921-26375929	NONHSAT108275
25	lnc-HIST1H4H-4	chr6:26439052-26439291	l_3142_chr6:26432914-26440114_testes
26	lnc-BTN2A2-4	chr6:26412933-26413445	NONHSAT108277
27	lnc-BTN2A1-3	chr6:26440721-26440876	NONHSAT108280
28	lnc-BTN2A2-4	chr6:26411783-26411809	NONHSAT108277

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	BTN3A1	hsa-miR-17-5p	chr6:26414108-26414129
2	BTN3A1	hsa-miR-20a-5p	chr6:26414108-26414129

Variant related genes	Relation type
BTN3A2	TF binding region
ENSG00000215979	TF binding region
BTN2A3P	TF binding region
BTN3A3	TF binding region
BTN3A1	TF binding region
BTN2A2	TF binding region
BTN3A2	CpG island
ENSG00000215979	CpG island
BTN2A3P	CpG island
BTN3A3	CpG island
BTN3A1	CpG island
BTN2A2	CpG island
ENSG00000218690	chromatin interactions
ENSG00000112763	chromatin interactions
ENSG00000196787	chromatin interactions
ENSG00000199289	chromatin interactions
ENSG00000187837	chromatin interactions
ENSG00000168298	chromatin interactions
ENSG00000124549	chromatin interactions
ENSG00000186470	chromatin interactions
ENSG00000198518	chromatin interactions
ENSG00000197409	chromatin interactions
ENSG00000182952	chromatin interactions
ENSG00000187990	chromatin interactions
ENSG00000228223	chromatin interactions
ENSG00000111801	chromatin interactions
ENSG00000124508	chromatin interactions
ENSG00000168274	chromatin interactions
ENSG00000158373	chromatin interactions
ENSG00000216331	chromatin interactions
ENSG00000124557	chromatin interactions
ENSG00000168242	chromatin interactions
ENSG00000215979	chromatin interactions
ENSG00000218281	chromatin interactions
ENSG00000158406	chromatin interactions
ENSG00000026950	chromatin interactions
ENSG00000252399	chromatin interactions
ENSG00000124635	chromatin interactions
ENSG00000188987	chromatin interactions

Extended variants
information (count: 3007 )
Associated
traits (count: 107 )

Variant overlapped rSNPs/rCNVs (count:3007 , 50 per page) page: 1 2 3 4 5 6 7 ... 61

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9393710	chr6:26367833-26367834	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs555360606	chr6:26367841-26367842	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs572059920	chr6:26367897-26367898	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs541134866	chr6:26367914-26367915	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs564595040	chr6:26368002-26368003	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs148410623	chr6:26368036-26368037	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs545956875	chr6:26368084-26368085	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs9689053	chr6:26368089-26368090	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs55807624	chr6:26368104-26368105	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs71557335	chr6:26368279-26368280	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs192635057	chr6:26368293-26368294	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs184210530	chr6:26368318-26368319	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs141815833	chr6:26368343-26368344	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs373674423	chr6:26368360-26368361	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs375820949	chr6:26368405-26368406	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs535121781	chr6:26368418-26368419	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs547225553	chr6:26368421-26368422	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs570507609	chr6:26368424-26368425	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs539682398	chr6:26368426-26368427	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs147257054	chr6:26368479-26368480	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs199562254	chr6:26368504-26368505	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs371008552	chr6:26368508-26368509	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs374536502	chr6:26368546-26368547	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs569883680	chr6:26368560-26368561	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs535746781	chr6:26368749-26368750	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs555598401	chr6:26368768-26368769	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs4990474	chr6:26368788-26368789	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs372487506	chr6:26368827-26368828	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs374368953	chr6:26368836-26368837	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs372205582	chr6:26368852-26368853	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs376536724	chr6:26368874-26368875	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs541411264	chr6:26368895-26368896	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs149839807	chr6:26368926-26368927	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs76764747	chr6:26368938-26368939	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs145878031	chr6:26368939-26368940	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs578036874	chr6:26368963-26368964	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs543524891	chr6:26368967-26368968	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs201827341	chr6:26368970-26368971	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs369213232	chr6:26368982-26368983	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region	2 gene(s)	Overlapped CNVs	n/a
40	rs562706598	chr6:26369048-26369049	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region	2 gene(s)	Overlapped CNVs	n/a
41	rs148971714	chr6:26369052-26369053	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region	2 gene(s)	Overlapped CNVs	n/a
42	rs41290371	chr6:26369080-26369081	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region	2 gene(s)	Overlapped CNVs	n/a
43	rs531494643	chr6:26369081-26369082	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region	2 gene(s)	Overlapped CNVs	n/a
44	rs542187223	chr6:26369098-26369099	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs184781347	chr6:26369118-26369119	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs200192027	chr6:26369161-26369162	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs527314687	chr6:26369178-26369179	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs375414421	chr6:26369179-26369180	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs547357023	chr6:26369233-26369234	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs13191660	chr6:26369252-26369253	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:107)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
Burkitt''s lymphoma	19759907	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Breast cancer	21364760	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Williams-beuren syndrome	16971481	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Autism	22495309	CNVD
Lung cancer	21569311	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:3592 , 50 per page) page: 1 2 3 4 5 6 7 ... 72

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26365800-26375200	Weak transcription	Aorta	Aorta
2	chr6:26366000-26368800	Weak transcription	Fetal Stomach	stomach
3	chr6:26366000-26369400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:26366000-26369400	Weak transcription	Fetal Lung	lung
5	chr6:26366000-26369400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:26366000-26369400	Weak transcription	Lung	lung
7	chr6:26366000-26369400	Weak transcription	Ovary	ovary
8	chr6:26366000-26369800	Weak transcription	Brain Angular Gyrus	brain
9	chr6:26366000-26369800	Weak transcription	Brain Substantia Nigra	brain
10	chr6:26366000-26373200	Weak transcription	Colonic Mucosa	Colon
11	chr6:26366000-26373800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:26366000-26374800	Weak transcription	Esophagus	oesophagus
13	chr6:26366000-26375000	Weak transcription	Brain Anterior Caudate	brain
14	chr6:26366000-26375600	Weak transcription	Gastric	stomach
15	chr6:26366000-26382600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:26366000-26383000	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:26366000-26383200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:26366000-26383200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:26366000-26383200	Weak transcription	Pancreas	Pancrea
20	chr6:26366000-26383200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:26366000-26383200	Weak transcription	HSMMtube	muscle
22	chr6:26366000-26383400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:26366200-26369400	Weak transcription	Placenta	Placenta
24	chr6:26366200-26371200	Weak transcription	A549	lung
25	chr6:26366200-26374600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:26366200-26374800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:26366200-26375000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:26366200-26375200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:26366200-26375800	Weak transcription	NH-A	brain
30	chr6:26366200-26382400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:26366200-26383200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:26366200-26383200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr6:26366400-26368000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr6:26366400-26372600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:26366800-26368200	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr6:26367000-26369200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:26367000-26369400	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:26367000-26370200	Weak transcription	Right Ventricle	heart
39	chr6:26367000-26374400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:26367000-26377800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:26367000-26383000	Weak transcription	NHEK	skin
42	chr6:26367000-26383200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:26367200-26368000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr6:26367200-26369400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:26367200-26369400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:26367200-26369400	Weak transcription	Fetal Intestine Large	intestine
47	chr6:26367200-26369400	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:26367200-26369400	Weak transcription	Rectal Smooth Muscle	rectum
49	chr6:26367200-26370600	Weak transcription	Fetal Intestine Small	intestine
50	chr6:26367200-26371600	Weak transcription	Stomach Mucosa	stomach

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