Variant report

Variant	nsv883498
Chromosome Location	chr6:26369549-26443853
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1643)
CpG islands
(count:1832)
Chromatin interactive
region (count:141)
LncRNA
region (count:31)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:1643 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:26440421-26441008	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:26383245-26383472	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:26421284-26421894	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:26389651-26389753	K562	blood:	n/a	n/a
5	ARID3A	chr6:26372942-26373010	K562	blood:	n/a	n/a
6	ARID3A	chr6:26388282-26388592	HepG2	liver:	n/a	n/a
7	ARID3A	chr6:26440731-26440735	K562	blood:	n/a	n/a
8	ARID3A	chr6:26420913-26421058	HepG2	liver:	n/a	n/a
9	ARID3A	chr6:26379721-26379968	K562	blood:	n/a	n/a
10	ATF1	chr6:26389555-26389824	K562	blood:	n/a	n/a
11	ATF1	chr6:26421413-26421823	K562	blood:	n/a	n/a
12	ATF1	chr6:26440527-26440834	K562	blood:	n/a	n/a
13	ATF1	chr6:26420969-26421083	K562	blood:	n/a	n/a
14	ATF1	chr6:26383091-26383465	K562	blood:	n/a	n/a
15	ATF1	chr6:26384288-26384605	K562	blood:	n/a	n/a
16	ATF1	chr6:26379681-26379920	K562	blood:	n/a	n/a
17	ATF1	chr6:26402234-26402914	K562	blood:	n/a	n/a
18	ATF3	chr6:26389548-26389958	K562	blood:	n/a	n/a
19	ATF3	chr6:26384220-26384567	K562	blood:	n/a	n/a
20	BACH1	chr6:26409530-26409809	H1-hESC	embryonic stem cell:	n/a	n/a
21	BACH1	chr6:26421609-26422083	H1-hESC	embryonic stem cell:	n/a	n/a
22	BACH1	chr6:26427881-26427892	H1-hESC	embryonic stem cell:	n/a	n/a
23	BACH1	chr6:26427660-26427966	K562	blood:	n/a	n/a
24	BATF	chr6:26398309-26398646	GM12878	blood:	n/a	chr6:26398493-26398504 chr6:26398513-26398524
25	BATF	chr6:26378427-26378675	GM12878	blood:	n/a	n/a
26	BATF	chr6:26393290-26393652	GM12878	blood:	n/a	n/a
27	BHLHE40	chr6:26400981-26401160	K562	blood:	n/a	n/a
28	BHLHE40	chr6:26440473-26441150	GM12878	blood:	n/a	n/a
29	BHLHE40	chr6:26402290-26402595	GM12878	blood:	n/a	n/a
30	BHLHE40	chr6:26402307-26402786	HepG2	liver:	n/a	n/a
31	BHLHE40	chr6:26372951-26372953	K562	blood:	n/a	n/a
32	BHLHE40	chr6:26383196-26383520	HepG2	liver:	n/a	n/a
33	BHLHE40	chr6:26383051-26383475	GM12878	blood:	n/a	n/a
34	BHLHE40	chr6:26440568-26440767	K562	blood:	n/a	n/a
35	BHLHE40	chr6:26389616-26389894	K562	blood:	n/a	n/a
36	BHLHE40	chr6:26385594-26385771	GM12878	blood:	n/a	n/a
37	BHLHE40	chr6:26414549-26414897	K562	blood:	n/a	n/a
38	BHLHE40	chr6:26421500-26421909	K562	blood:	n/a	n/a
39	BHLHE40	chr6:26421365-26421819	GM12878	blood:	n/a	n/a
40	BHLHE40	chr6:26432223-26432270	K562	blood:	n/a	n/a
41	BHLHE40	chr6:26383124-26383727	K562	blood:	n/a	n/a
42	BHLHE40	chr6:26402305-26402843	K562	blood:	n/a	n/a
43	BRCA1	chr6:26383156-26383464	Hela-S3	cervix:	n/a	n/a
44	BRCA1	chr6:26440558-26440819	Hela-S3	cervix:	n/a	n/a
45	BRCA1	chr6:26421387-26421913	Hela-S3	cervix:	n/a	n/a
46	BRCA1	chr6:26421510-26421877	HepG2	liver:	n/a	n/a
47	BRCA1	chr6:26383245-26383595	H1-hESC	embryonic stem cell:	n/a	n/a
48	BRCA1	chr6:26421514-26421947	H1-hESC	embryonic stem cell:	n/a	n/a
49	BRCA1	chr6:26383338-26383539	GM12878	blood:	n/a	n/a
50	BRCA1	chr6:26383197-26383433	HepG2	liver:	n/a	n/a

(count:1832 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26422779-26422829	HEK293	kidney:	embryo
2	chr6:26402511-26402561	PFSK-1	brain:	n/a
3	chr6:26422779-26422829	HEK293	kidney:	embryo
4	chr6:26402511-26402561	PFSK-1	brain:	n/a
5	chr6:26407505-26407555	AoSMC	blood vessel:	n/a
6	chr6:26401793-26401843	NHBE	bronchial:	n/a
7	chr6:26407505-26407555	Hela-S3	cervix:	n/a
8	chr6:26393253-26393303	GM19239	blood:	n/a
9	chr6:26442290-26442340	CMK	blood:	n/a
10	chr6:26421791-26421841	AG04449	skin:	fetal
11	chr6:26383297-26383347	HUVEC	blood vessel:	n/a
12	chr6:26415234-26415284	HCF	heart:	n/a
13	chr6:26402511-26402561	K562	blood:	n/a
14	chr6:26421120-26421170	HEK293	kidney:	embryo
15	chr6:26382695-26382745	HCM	heart:	n/a
16	chr6:26382695-26382745	HIPEpiC	eye:	n/a
17	chr6:26421791-26421841	HRE	kidney:	n/a
18	chr6:26382817-26382867	HCPEpiC	choroid plexus:	n/a
19	chr6:26402310-26402360	NHDF-neo	bronchial:	n/a
20	chr6:26370623-26370673	Caco-2	colon:	n/a
21	chr6:26383374-26383424	HL-60	blood:	n/a
22	chr6:26420759-26420809	HCPEpiC	choroid plexus:	n/a
23	chr6:26421570-26421620	PrEC	prostate:	n/a
24	chr6:26401793-26401843	RPTEC	kidney:	n/a
25	chr6:26415234-26415284	ECC-1	luminal epithelium:	n/a
26	chr6:26375990-26376040	AoSMC	blood vessel:	n/a
27	chr6:26401691-26401741	HCF	heart:	n/a
28	chr6:26386191-26386241	AoSMC	blood vessel:	n/a
29	chr6:26422779-26422829	Hepatocyte	liver:	n/a
30	chr6:26440340-26440390	SK-N-MC	brain:	n/a
31	chr6:26401793-26401843	NT2-D1	testis:	n/a
32	chr6:26407505-26407555	NT2-D1	testis:	n/a
33	chr6:26383297-26383347	HCPEpiC	choroid plexus:	n/a
34	chr6:26401793-26401843	PFSK-1	brain:	n/a
35	chr6:26415234-26415284	SK-N-SH	brain:	n/a
36	chr6:26383297-26383347	HL-60	blood:	n/a
37	chr6:26401691-26401741	H1-hESC	embryonic stem cell:	embryo
38	chr6:26402776-26402826	NHBE	bronchial:	n/a
39	chr6:26421791-26421841	HCM	heart:	n/a
40	chr6:26440340-26440390	HAEpiC	amniotic membrane:	n/a
41	chr6:26440610-26440660	LNCaP	prostate:	n/a
42	chr6:26382695-26382745	NHDF-neo	bronchial:	n/a
43	chr6:26440610-26440660	RPTEC	kidney:	n/a
44	chr6:26386191-26386241	NT2-D1	testis:	n/a
45	chr6:26407505-26407555	NHDF-neo	bronchial:	n/a
46	chr6:26383673-26383723	AG09309	skin:	n/a
47	chr6:26382695-26382745	HCT-116	colon:	n/a
48	chr6:26393253-26393303	MCF-7	breast:	n/a
49	chr6:26383374-26383424	HMEC	breast:	n/a
50	chr6:26402776-26402826	MCF-7	breast:	n/a

(count:141 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr6:26391021..26393717-chr6:26396965..26399290,2	K562	blood:
2	chr6:26395411..26398038-chr6:26426386..26428479,2	K562	blood:
3	chr6:26384661..26390027-chr6:26390440..26394308,9	K562	blood:
4	chr6:26386249..26387977-chr6:26410768..26413470,2	K562	blood:
5	chr6:26214943..26217251-chr6:26374280..26376179,2	K562	blood:
6	chr6:26435741..26437513-chr6:26437862..26439731,2	MCF-7	breast:
7	chr6:26407106..26409620-chr6:27099547..27102261,2	K562	blood:
8	chr6:26373307..26375855-chr6:26376435..26379484,4	K562	blood:
9	chr6:26385648..26389626-chr6:26390686..26394827,7	K562	blood:
10	chr6:26373307..26375855-chr6:26376435..26379484,4	K562	blood:
11	chr6:26341882..26342492-chr6:26420774..26421520,2	MCF-7	breast:
12	chr6:26378930..26384775-chr6:26385231..26390850,8	MCF-7	breast:
13	chr6:26370389..26374393-chr6:26375542..26380304,5	K562	blood:
14	chr6:26403709..26405372-chr6:26410974..26412511,2	MCF-7	breast:
15	chr6:26340033..26342028-chr6:26415409..26417011,2	MCF-7	breast:
16	chr6:26384982..26386521-chr6:26418535..26421413,2	K562	blood:
17	chr6:26392331..26394717-chr6:26410303..26413058,2	K562	blood:
18	chr6:26373194..26374949-chr6:26387423..26389905,2	K562	blood:
19	chr6:26408794..26411203-chr6:26449353..26451664,2	K562	blood:
20	chr6:26390334..26392111-chr6:26392874..26394423,2	K562	blood:
21	chr6:26393793..26397119-chr6:26397996..26400964,7	K562	blood:
22	chr6:26390334..26392111-chr6:26392874..26394423,2	K562	blood:
23	chr6:26376258..26380187-chr6:26381333..26383262,3	K562	blood:
24	chr6:26056232..26057928-chr6:26382432..26384674,2	K562	blood:
25	chr6:26432568..26435135-chr6:26469851..26472610,2	K562	blood:
26	chr6:26384982..26386521-chr6:26418535..26421413,2	K562	blood:
27	chr6:26385663..26388143-chr6:26388160..26389788,2	K562	blood:
28	chr6:26386609..26388143-chr6:26388160..26389725,2	K562	blood:
29	chr6:26231864..26233958-chr6:26385034..26386589,2	K562	blood:
30	chr6:26410362..26412070-chr6:26433170..26434704,2	K562	blood:
31	chr6:26365183..26366783-chr6:26383299..26386049,2	K562	blood:
32	chr6:26370389..26373294-chr6:26375542..26378035,2	K562	blood:
33	chr6:26360109..26361715-chr6:26372989..26375105,2	K562	blood:
34	chr6:26383299..26384986-chr6:26520070..26522600,2	K562	blood:
35	chr6:26431968..26434782-chr6:26519398..26522131,2	MCF-7	breast:
36	chr6:26384869..26386538-chr6:26388093..26389767,2	MCF-7	breast:
37	chr6:26400774..26405587-chr6:26406042..26409897,8	K562	blood:
38	chr6:26374643..26376462-chr6:26381050..26382858,2	K562	blood:
39	chr6:26436944..26439158-chr6:26458061..26459676,2	MCF-7	breast:
40	chr6:26365087..26367638-chr6:26438423..26440461,2	K562	blood:
41	chr6:26400255..26403237-chr6:26521906..26524697,3	K562	blood:
42	chr6:26397216..26399740-chr6:26407400..26409263,3	K562	blood:
43	chr6:26374643..26376462-chr6:26381050..26382858,2	K562	blood:
44	chr6:26382880..26385234-chr6:26416041..26418423,2	K562	blood:
45	chr6:26412544..26414571-chr6:26420012..26422534,3	K562	blood:
46	chr6:26395454..26397277-chr6:26501383..26504153,2	K562	blood:
47	chr6:26424662..26427367-chr6:26444915..26446912,2	K562	blood:
48	chr6:26386249..26387977-chr6:26410768..26413470,2	K562	blood:
49	chr6:26419994..26421593-chr6:26434253..26437135,2	K562	blood:
50	chr6:26419994..26421593-chr6:26434253..26437135,2	K562	blood:

(count:31 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BTN2A2-4	chr6:26410122-26410260	NONHSAT108277
2	lnc-BTN2A2-4	chr6:26411783-26413230	NONHSAT108278
3	lnc-BTN2A2-2	chr6:26370653-26370831	NONHSAT108273
4	lnc-BTN2A2-4	chr6:26409811-26409961	NONHSAT108278
5	lnc-HIST1H4H-4	chr6:26437217-26437294	l_3142_chr6:26432914-26440114_testes
6	lnc-BTN2A1-3	chr6:26440738-26440876	NONHSAT108281
7	lnc-BTN2A2-4	chr6:26411337-26411363	NONHSAT108278
8	lnc-BTN2A1-3	chr6:26443610-26443670	NONHSAT108280
9	lnc-BTN2A2-2	chr6:26374999-26375036	NONHSAT108273
10	lnc-BTN2A1-3	chr6:26443610-26444032	NONHSAT108281
11	lnc-HIST1H4H-4	chr6:26439052-26439291	l_3142_chr6:26432914-26440114_testes
12	lnc-BTN3A2-2	chr6:26369579-26370215	l_3140_chr6:26360287-26370215_whiteBloodCell
13	lnc-HIST1H4H-4	chr6:26432915-26433370	l_3142_chr6:26432914-26440114_testes
14	lnc-BTN2A2-2	chr6:26372921-26375929	NONHSAT108275
15	lnc-BTN2A2-2	chr6:26374555-26374601	NONHSAT108273
16	lnc-BTN2A1-3	chr6:26440721-26440876	NONHSAT108280
17	lnc-BTN2A2-2	chr6:26373504-26373641	NONHSAT108273
18	lnc-BTN3A1-1	chr6:26428871-26428899	NONHSAT108279
19	lnc-BTN2A2-4	chr6:26409773-26409961	NONHSAT108277
20	lnc-BTN2A2-1	chr6:26404363-26404783	NONHSAT108276
21	lnc-BTN3A3-1	chr6:26439934-26440114	l_3143_chr6:26439933-26448332_testes
22	lnc-BTN3A1-1	chr6:26426410-26426751	NONHSAT108279
23	lnc-BTN3A1-1	chr6:26423780-26423987	NONHSAT108279
24	lnc-BTN2A1-3	chr6:26443798-26444167	NONHSAT108280
25	lnc-BTN2A2-4	chr6:26411337-26411363	NONHSAT108277
26	lnc-BTN2A2-1	chr6:26402478-26402640	NONHSAT108276
27	lnc-BTN2A2-4	chr6:26410122-26410260	NONHSAT108278
28	lnc-BTN2A2-4	chr6:26412933-26413445	NONHSAT108277
29	lnc-BTN2A2-4	chr6:26411783-26411809	NONHSAT108277
30	lnc-HIST1H4H-4	chr6:26439934-26440114	l_3142_chr6:26432914-26440114_testes
31	lnc-BTN3A3-1	chr6:26442281-26442343	l_3143_chr6:26439933-26448332_testes

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	BTN3A1	hsa-miR-17-5p	chr6:26414108-26414129
2	BTN3A1	hsa-miR-20a-5p	chr6:26414108-26414129

Variant related genes	Relation type
BTN3A2	TF binding region
BTN3A1	TF binding region
ENSG00000215979	TF binding region
BTN2A3P	TF binding region
BTN2A2	TF binding region
BTN3A3	TF binding region
BTN3A2	CpG island
BTN3A1	CpG island
ENSG00000215979	CpG island
BTN2A3P	CpG island
BTN2A2	CpG island
BTN3A3	CpG island
ENSG00000186470	chromatin interactions
ENSG00000124508	chromatin interactions
ENSG00000112763	chromatin interactions
ENSG00000218281	chromatin interactions
ENSG00000124549	chromatin interactions
ENSG00000168274	chromatin interactions
ENSG00000198518	chromatin interactions
ENSG00000215979	chromatin interactions
ENSG00000124635	chromatin interactions
ENSG00000252399	chromatin interactions
ENSG00000196787	chromatin interactions
ENSG00000228223	chromatin interactions
ENSG00000216331	chromatin interactions
ENSG00000187837	chromatin interactions
ENSG00000158373	chromatin interactions
ENSG00000158406	chromatin interactions
ENSG00000168298	chromatin interactions
ENSG00000188987	chromatin interactions
ENSG00000197409	chromatin interactions
ENSG00000026950	chromatin interactions
ENSG00000218690	chromatin interactions
ENSG00000168242	chromatin interactions
ENSG00000182952	chromatin interactions
ENSG00000199289	chromatin interactions
ENSG00000187990	chromatin interactions
ENSG00000124557	chromatin interactions
ENSG00000111801	chromatin interactions

Extended variants
information (count: 2985 )
Associated
traits (count: 106 )

Variant overlapped rSNPs/rCNVs (count:2985 , 50 per page) page: 1 2 3 4 5 6 7 ... 60

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9379859	chr6:26369549-26369550	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs181097184	chr6:26369586-26369587	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs9358935	chr6:26369587-26369588	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs79926277	chr6:26369597-26369598	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs62394813	chr6:26369604-26369605	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs537563575	chr6:26369643-26369644	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
7	rs184807401	chr6:26369646-26369647	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
8	rs576352957	chr6:26369660-26369661	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
9	rs145631731	chr6:26369667-26369668	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
10	rs138134160	chr6:26369715-26369716	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
11	rs116651795	chr6:26369716-26369717	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
12	rs369054986	chr6:26369717-26369718	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs372170001	chr6:26369723-26369724	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs532749723	chr6:26369734-26369735	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
15	rs549887468	chr6:26369743-26369744	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs142617081	chr6:26369764-26369765	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs190000235	chr6:26369797-26369798	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs549150522	chr6:26369833-26369834	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs565901161	chr6:26369883-26369884	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs539373478	chr6:26369903-26369904	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs575189420	chr6:26369913-26369914	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
22	rs535329347	chr6:26369974-26369975	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
23	rs180865421	chr6:26369991-26369992	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
24	rs185452206	chr6:26370020-26370021	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
25	rs537048346	chr6:26370042-26370043	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
26	rs557520326	chr6:26370050-26370051	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
27	rs146005865	chr6:26370194-26370195	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
28	rs376489375	chr6:26370211-26370212	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
29	rs536712451	chr6:26370227-26370228	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs555620221	chr6:26370228-26370229	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs572095370	chr6:26370229-26370230	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs541324901	chr6:26370265-26370266	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs34436535	chr6:26370365-26370366	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs577612782	chr6:26370368-26370369	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs116435025	chr6:26370376-26370377	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs563985809	chr6:26370397-26370398	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs115813830	chr6:26370405-26370406	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs189335085	chr6:26370414-26370415	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs181987318	chr6:26370463-26370464	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs35307327	chr6:26370474-26370475	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs60049578	chr6:26370482-26370483	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs552100462	chr6:26370515-26370516	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs146687855	chr6:26370569-26370570	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs34878490	chr6:26370572-26370573	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
45	rs186780460	chr6:26370598-26370599	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs199674196	chr6:26370603-26370604	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs9379860	chr6:26370605-26370606	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs201001724	chr6:26370610-26370611	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs9379861	chr6:26370616-26370617	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs370722939	chr6:26370619-26370620	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:106)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
Burkitt''s lymphoma	19759907	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Breast cancer	21364760	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Williams-beuren syndrome	16971481	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Autism	22495309	CNVD
Lung cancer	21569311	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:3575 , 50 per page) page: 1 2 3 4 5 6 7 ... 72

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26365800-26375200	Weak transcription	Aorta	Aorta
2	chr6:26366000-26369800	Weak transcription	Brain Angular Gyrus	brain
3	chr6:26366000-26369800	Weak transcription	Brain Substantia Nigra	brain
4	chr6:26366000-26373200	Weak transcription	Colonic Mucosa	Colon
5	chr6:26366000-26373800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:26366000-26374800	Weak transcription	Esophagus	oesophagus
7	chr6:26366000-26375000	Weak transcription	Brain Anterior Caudate	brain
8	chr6:26366000-26375600	Weak transcription	Gastric	stomach
9	chr6:26366000-26382600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:26366000-26383000	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:26366000-26383200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:26366000-26383200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:26366000-26383200	Weak transcription	Pancreas	Pancrea
14	chr6:26366000-26383200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:26366000-26383200	Weak transcription	HSMMtube	muscle
16	chr6:26366000-26383400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:26366200-26371200	Weak transcription	A549	lung
18	chr6:26366200-26374600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:26366200-26374800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:26366200-26375000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:26366200-26375200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:26366200-26375800	Weak transcription	NH-A	brain
23	chr6:26366200-26382400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:26366200-26383200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:26366200-26383200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr6:26366400-26372600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:26367000-26370200	Weak transcription	Right Ventricle	heart
28	chr6:26367000-26374400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:26367000-26377800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:26367000-26383000	Weak transcription	NHEK	skin
31	chr6:26367000-26383200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:26367200-26370600	Weak transcription	Fetal Intestine Small	intestine
33	chr6:26367200-26371600	Weak transcription	Stomach Mucosa	stomach
34	chr6:26367200-26374600	Weak transcription	NHLF	lung
35	chr6:26367400-26375000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:26367600-26372800	Weak transcription	NHDF-Ad	bronchial
37	chr6:26367600-26373400	Genic enhancers	Primary T cells fromperipheralblood	blood
38	chr6:26367600-26374600	Weak transcription	Hela-S3	cervix
39	chr6:26367800-26369600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:26367800-26369800	Weak transcription	Fetal Thymus	thymus
41	chr6:26367800-26369800	Weak transcription	Thymus	Thymus
42	chr6:26367800-26372200	Weak transcription	K562	blood
43	chr6:26367800-26373000	Weak transcription	GM12878-XiMat	blood
44	chr6:26367800-26378600	Weak transcription	Small Intestine	intestine
45	chr6:26368600-26370800	Genic enhancers	Spleen	Spleen
46	chr6:26368600-26372000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:26368800-26369800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:26368800-26371400	Strong transcription	Fetal Stomach	stomach
49	chr6:26368800-26375200	Strong transcription	Primary B cells from cord blood	blood
50	chr6:26368800-26376000	Genic enhancers	Primary T helper cells fromperipheralblood	blood

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