Variant report

Variant	nsv883506
Chromosome Location	chr6:27271343-27288687
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:473)
CpG islands
(count:978)
Chromatin interactive
region (count:30)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:473 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:27280472-27280791	HepG2	liver:	n/a	n/a
2	ATF3	chr6:27271437-27271708	K562	blood:	n/a	n/a
3	ATF3	chr6:27271243-27271814	A549	lung:	n/a	n/a
4	ATF3	chr6:27271188-27271817	A549	lung:	n/a	n/a
5	ATF3	chr6:27281799-27282207	K562	blood:	n/a	n/a
6	ATF3	chr6:27271308-27271783	HCT-116	colon:	n/a	n/a
7	BACH1	chr6:27279940-27280953	H1-hESC	embryonic stem cell:	n/a	n/a
8	BCLAF1	chr6:27280335-27280949	GM12878	blood:	n/a	n/a
9	BHLHE40	chr6:27280499-27280779	GM12878	blood:	n/a	n/a
10	BHLHE40	chr6:27285617-27285993	K562	blood:	n/a	n/a
11	BHLHE40	chr6:27286829-27287040	K562	blood:	n/a	n/a
12	BRCA1	chr6:27280025-27280189	GM12878	blood:	n/a	n/a
13	CBX3	chr6:27281759-27282249	K562	blood:	n/a	n/a
14	CBX3	chr6:27281745-27282292	K562	blood:	n/a	n/a
15	CEBPB	chr6:27271420-27271764	HepG2	liver:	n/a	n/a
16	CEBPB	chr6:27271642-27271676	A549	lung:	n/a	n/a
17	CEBPB	chr6:27287364-27287556	K562	blood:	n/a	n/a
18	CHD2	chr6:27280539-27280719	HepG2	liver:	n/a	n/a
19	CHD2	chr6:27280087-27280750	GM12878	blood:	n/a	chr6:27280236-27280246 chr6:27280271-27280281
20	CHD2	chr6:27279689-27280725	H1-hESC	embryonic stem cell:	n/a	chr6:27280236-27280246 chr6:27280271-27280281
21	CREB1	chr6:27280490-27280848	A549	lung:	n/a	n/a
22	CTCF	chr6:27280074-27280373	GM12892	blood:	n/a	n/a
23	CTCF	chr6:27280560-27280710	GM12870	blood:	n/a	chr6:27280633-27280651 chr6:27280635-27280656
24	CTCF	chr6:27280580-27280730	GM12801	blood:	n/a	chr6:27280633-27280651 chr6:27280635-27280656
25	CTCF	chr6:27280115-27280363	GM12878	blood:	n/a	n/a
26	CTCF	chr6:27280332-27280889	H1-hESC	embryonic stem cell:	n/a	chr6:27280633-27280651 chr6:27280635-27280656
27	CTCF	chr6:27280000-27280150	GM12868	blood:	n/a	n/a
28	CTCF	chr6:27280580-27280730	GM12865	blood:	n/a	chr6:27280633-27280651 chr6:27280635-27280656
29	CTCF	chr6:27280079-27280355	GM19238	blood:	n/a	n/a
30	CTCF	chr6:27280580-27280730	HMEC	breast:	n/a	chr6:27280633-27280651 chr6:27280635-27280656
31	CTCF	chr6:27280580-27280730	WERI-Rb-1	eye:	n/a	chr6:27280633-27280651 chr6:27280635-27280656
32	CTCF	chr6:27280220-27280370	HCM	heart:	n/a	n/a
33	CTCF	chr6:27280430-27280854	H1-hESC	embryonic stem cell:	n/a	chr6:27280633-27280651 chr6:27280635-27280656
34	CTCF	chr6:27280473-27280829	MCF-7	breast:	n/a	chr6:27280633-27280651 chr6:27280635-27280656
35	CTCF	chr6:27280640-27280790	A549	lung:	n/a	n/a
36	CTCF	chr6:27280242-27280296	MCF-7	breast:	n/a	n/a
37	CTCF	chr6:27280580-27280730	GM12864	blood:	n/a	chr6:27280633-27280651 chr6:27280635-27280656
38	CTCF	chr6:27280509-27280777	Medullo	brain:	n/a	chr6:27280633-27280651 chr6:27280635-27280656
39	CTCF	chr6:27280480-27280630	HFF	foreskin:	n/a	n/a
40	CTCF	chr6:27280080-27280230	HCM	heart:	n/a	n/a
41	CTCF	chr6:27280620-27280770	HCT-116	colon:	n/a	chr6:27280633-27280651 chr6:27280635-27280656
42	CTCF	chr6:27280504-27280780	MCF-7	breast:	n/a	chr6:27280633-27280651 chr6:27280635-27280656
43	CTCF	chr6:27280560-27280710	AoAF	blood vessel:	n/a	chr6:27280633-27280651 chr6:27280635-27280656
44	CTCF	chr6:27280140-27280290	GM12873	blood:	n/a	n/a
45	CTCF	chr6:27280140-27280290	HEEpiC	esophagus:	n/a	n/a
46	CTCF	chr6:27280160-27280310	AG09319	gingival:	n/a	n/a
47	CTCF	chr6:27280152-27280280	GM13976	blood:	n/a	n/a
48	CTCF	chr6:27280100-27280377	GM19240	blood:	n/a	n/a
49	CTCF	chr6:27280180-27280330	GM12873	blood:	n/a	n/a
50	CTCF	chr6:27280380-27280530	HUVEC	blood vessel:	n/a	n/a

(count:978 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:27280603-27280653	GM12892	blood:	n/a
2	chr6:27278678-27278728	AG09319	gingival:	n/a
3	chr6:27280603-27280653	GM12892	blood:	n/a
4	chr6:27278678-27278728	AG09319	gingival:	n/a
5	chr6:27280139-27280189	HCPEpiC	choroid plexus:	n/a
6	chr6:27280190-27280240	ovcar-3	ovarian:	n/a
7	chr6:27280722-27280772	PrEC	prostate:	n/a
8	chr6:27277996-27278046	HUVEC	blood vessel:	n/a
9	chr6:27280122-27280172	K562	blood:	n/a
10	chr6:27280141-27280191	HepG2	liver:	n/a
11	chr6:27277996-27278046	HMEC	breast:	n/a
12	chr6:27279917-27279967	AoSMC	blood vessel:	n/a
13	chr6:27280010-27280060	H1-hESC	embryonic stem cell:	embryo
14	chr6:27280195-27280245	ovcar-3	ovarian:	n/a
15	chr6:27280423-27280473	HepG2	liver:	n/a
16	chr6:27280373-27280423	GM19239	blood:	n/a
17	chr6:27280603-27280653	HPAEpiC	pulmonary alveolar:	n/a
18	chr6:27280141-27280191	U87	brain:	n/a
19	chr6:27277996-27278046	Jurkat	blood:	n/a
20	chr6:27280373-27280423	NH-A	brain:	n/a
21	chr6:27280373-27280423	SKMC	muscle:	n/a
22	chr6:27277996-27278046	HRPEpiC	eye:	n/a
23	chr6:27280122-27280172	NH-A	brain:	n/a
24	chr6:27280139-27280189	HRCEpiC	kidney:	n/a
25	chr6:27277996-27278046	MCF10A-Er-Src	breast:	n/a
26	chr6:27276867-27276917	HMEC	breast:	n/a
27	chr6:27280506-27280556	U87	brain:	n/a
28	chr6:27280139-27280189	H1-hESC	embryonic stem cell:	embryo
29	chr6:27276867-27276917	PFSK-1	brain:	n/a
30	chr6:27280506-27280556	K562	blood:	n/a
31	chr6:27280373-27280423	SAEC	small airway:	n/a
32	chr6:27278975-27279025	NH-A	brain:	n/a
33	chr6:27277996-27278046	SK-N-SH_RA	brain:	n/a
34	chr6:27280010-27280060	ovcar-3	ovarian:	n/a
35	chr6:27280506-27280556	BJ	skin:	n/a
36	chr6:27280423-27280473	AG09319	gingival:	n/a
37	chr6:27280122-27280172	HCPEpiC	choroid plexus:	n/a
38	chr6:27280603-27280653	PANC-1	pancreas:	n/a
39	chr6:27280122-27280172	SK-N-SH	brain:	n/a
40	chr6:27279917-27279967	GM12892	blood:	n/a
41	chr6:27280195-27280245	GM12891	blood:	n/a
42	chr6:27279917-27279967	HPAEpiC	pulmonary alveolar:	n/a
43	chr6:27278678-27278728	SK-N-SH_RA	brain:	n/a
44	chr6:27280423-27280473	IMR90	lung:	fetal
45	chr6:27277996-27278046	PFSK-1	brain:	n/a
46	chr6:27280722-27280772	Hela-S3	cervix:	n/a
47	chr6:27279917-27279967	AG04450	lung:	fetal
48	chr6:27279917-27279967	SK-N-SH_RA	brain:	n/a
49	chr6:27279917-27279967	BE2_C	brain:	n/a
50	chr6:27280010-27280060	MCF-7	breast:	n/a

(count:30 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27271444..27273700-chr6:27295110..27297837,2	K562	blood:
2	chr6:27280993..27282944-chr6:27286928..27288455,2	K562	blood:
3	chr6:27275752..27278982-chr6:27286043..27289546,5	K562	blood:
4	chr6:27280638..27284776-chr6:27284821..27286984,4	K562	blood:
5	chr6:27273565..27277461-chr6:27284741..27287387,3	K562	blood:
6	chr6:27274897..27277280-chr6:27287686..27289546,3	K562	blood:
7	chr6:27258656..27261261-chr6:27270962..27272747,2	K562	blood:
8	chr6:27275752..27278982-chr6:27286043..27289546,5	K562	blood:
9	chr6:27263474..27265071-chr6:27275388..27277708,2	K562	blood:
10	chr6:27272465..27274162-chr6:27277068..27279807,3	K562	blood:
11	chr6:27269186..27270845-chr6:27275769..27278192,2	K562	blood:
12	chr6:27283617..27285122-chr6:27291968..27294093,2	K562	blood:
13	chr6:27267639..27271310-chr6:27281448..27285145,3	K562	blood:
14	chr6:27279187..27280995-chr6:27439360..27441808,2	MCF-7	breast:
15	chr6:27273015..27275740-chr6:27298464..27301159,2	K562	blood:
16	chr6:27283136..27284776-chr6:27284821..27286348,2	K562	blood:
17	chr6:27114741..27116846-chr6:27278241..27280578,2	K562	blood:
18	chr6:27283444..27285555-chr6:27322877..27325059,2	K562	blood:
19	chr6:27274352..27276653-chr6:27341401..27344004,2	K562	blood:
20	chr6:27276042..27278512-chr6:27366738..27369712,2	K562	blood:
21	chr6:27272702..27275441-chr6:27290945..27293539,2	K562	blood:
22	chr6:27283136..27284776-chr6:27284821..27286348,2	K562	blood:
23	chr6:27280638..27284776-chr6:27284821..27286984,4	K562	blood:
24	chr6:27283533..27286469-chr6:27424537..27427357,2	K562	blood:
25	chr6:27118908..27121103-chr6:27280745..27283160,2	K562	blood:
26	chr6:27280335..27283011-chr6:27292973..27294490,2	K562	blood:
27	chr6:27273565..27277461-chr6:27284741..27287387,3	K562	blood:
28	chr6:27285675..27289188-chr6:27290325..27293992,4	K562	blood:
29	chr6:27274897..27277280-chr6:27287686..27289546,3	K562	blood:
30	chr6:27280993..27282944-chr6:27286928..27288455,2	K562	blood:

No data

Variant related genes	Relation type
POM121L2	TF binding region
VN1R10P	TF binding region
POM121L2	CpG island
VN1R10P	CpG island
ENSG00000124613	chromatin interactions
ENSG00000220758	chromatin interactions
ENSG00000158553	chromatin interactions
ENSG00000265565	chromatin interactions
ENSG00000184825	chromatin interactions
ENSG00000096654	chromatin interactions

Extended variants
information (count: 509 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:509 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7771953	chr6:27271343-27271344	Active TSS Bivalent/Poised TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs554957280	chr6:27271358-27271359	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs142310972	chr6:27271374-27271375	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs563623593	chr6:27271391-27271392	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs575898539	chr6:27271396-27271397	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs146149082	chr6:27271404-27271405	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs559555992	chr6:27271453-27271454	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs528272483	chr6:27271470-27271471	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs141315873	chr6:27271474-27271475	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs112469219	chr6:27271498-27271499	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs530469181	chr6:27271506-27271507	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs550501308	chr6:27271512-27271513	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs191769769	chr6:27271545-27271546	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs536510646	chr6:27271561-27271562	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs553170153	chr6:27271565-27271566	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs566754224	chr6:27271567-27271568	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs150340684	chr6:27271569-27271570	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs375231628	chr6:27271570-27271571	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs575692816	chr6:27271572-27271573	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs544283657	chr6:27271584-27271585	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs72839454	chr6:27271585-27271586	Active TSS Bivalent/Poised TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs369392710	chr6:27271588-27271589	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs147121091	chr6:27271590-27271591	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs184094019	chr6:27271595-27271596	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs149471190	chr6:27271596-27271597	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs188118030	chr6:27271600-27271601	Active TSS Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs543994870	chr6:27272493-27272494	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs371652514	chr6:27272513-27272514	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs574151640	chr6:27272610-27272611	Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs558807450	chr6:27272629-27272630	Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs78581349	chr6:27272720-27272721	Active TSS Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs560060204	chr6:27272740-27272741	Active TSS Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs111256519	chr6:27272748-27272749	Active TSS Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs189824404	chr6:27272827-27272828	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs546506155	chr6:27272853-27272854	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs11370148	chr6:27272861-27272862	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs397977778	chr6:27272871-27272872	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs146149595	chr6:27272901-27272902	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs531987388	chr6:27272920-27272921	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs182299767	chr6:27272925-27272926	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs16897417	chr6:27272937-27272938	Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs527749538	chr6:27272971-27272972	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs547492726	chr6:27273022-27273023	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs570851006	chr6:27273028-27273029	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs140165206	chr6:27273087-27273088	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs544486579	chr6:27273105-27273106	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs373598135	chr6:27273127-27273128	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs141534220	chr6:27273155-27273156	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs538979296	chr6:27273163-27273164	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs188886205	chr6:27273174-27273175	Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	19571809	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD

Chromatin state (count:330 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27270400-27271600	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr6:27270400-27271600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:27270800-27271400	Active TSS	NHEK	skin
4	chr6:27270800-27271600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr6:27271000-27271600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:27272600-27272800	Enhancers	K562	blood
7	chr6:27272600-27273200	Active TSS	A549	lung
8	chr6:27278600-27278800	Bivalent/Poised TSS	Placenta Amnion	Placenta Amnion
9	chr6:27279200-27279600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:27279400-27279600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:27279400-27279800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:27279400-27280000	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:27279400-27280600	Active TSS	Gastric	stomach
14	chr6:27279400-27281000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr6:27279400-27281000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr6:27279400-27281000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr6:27279400-27281000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr6:27279600-27279800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:27279600-27279800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:27279600-27279800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr6:27279600-27279800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
22	chr6:27279600-27279800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
23	chr6:27279600-27279800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:27279600-27279800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:27279600-27279800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:27279600-27279800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
27	chr6:27279600-27279800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr6:27279600-27279800	Bivalent Enhancer	Fetal Intestine Small	intestine
29	chr6:27279600-27279800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr6:27279600-27279800	Bivalent Enhancer	Fetal Stomach	stomach
31	chr6:27279600-27279800	Bivalent Enhancer	Psoas Muscle	Psoas
32	chr6:27279600-27279800	Active TSS	Right Atrium	heart
33	chr6:27279600-27279800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
34	chr6:27279600-27279800	Bivalent Enhancer	GM12878-XiMat	blood
35	chr6:27279600-27280000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:27279600-27280000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:27279600-27280000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:27279600-27280000	Bivalent Enhancer	Colon Smooth Muscle	Colon
39	chr6:27279600-27280000	Bivalent Enhancer	Fetal Muscle Leg	muscle
40	chr6:27279600-27280000	Bivalent Enhancer	Placenta	Placenta
41	chr6:27279600-27280000	Bivalent Enhancer	Left Ventricle	heart
42	chr6:27279600-27280000	Bivalent Enhancer	Lung	lung
43	chr6:27279600-27280200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:27279600-27280200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
45	chr6:27279600-27280200	Enhancers	Spleen	Spleen
46	chr6:27279600-27280400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
47	chr6:27279600-27280600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
48	chr6:27279600-27280600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:27279600-27280800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:27279600-27280800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links