Variant report

Variant	nsv884719
Chromosome Location	chr6:32230678-32281784
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:32259346..32261422-chr6:32263927..32266328,2	MCF-7	breast:
2	chr6:32260150..32262258-chr6:32267045..32269420,2	MCF-7	breast:
3	chr6:32264476..32267942-chr6:32268038..32271496,3	K562	blood:
4	chr6:32264476..32267942-chr6:32268038..32271496,3	K562	blood:
5	chr6:32266172..32268310-chr6:32269017..32271310,2	MCF-7	breast:
6	chr6:32221059..32223929-chr6:32261762..32264103,2	MCF-7	breast:
7	chr6:32251349..32253695-chr6:32277418..32279197,2	MCF-7	breast:
8	chr6:32251349..32253695-chr6:32277418..32279197,2	MCF-7	breast:
9	chr6:32260223..32261904-chr6:32262964..32264831,2	K562	blood:
10	chr6:32260150..32262258-chr6:32267045..32269420,2	MCF-7	breast:
11	chr6:32266172..32268310-chr6:32269017..32271310,2	MCF-7	breast:
12	chr6:32260223..32261904-chr6:32262964..32264831,2	K562	blood:
13	chr6:32259346..32261422-chr6:32263927..32266328,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNF5-1	chr6:32230389-32233615	ENSG00000225914.1

No data

Variant related genes	Relation type
ENSG00000225914	chromatin interactions

Extended variants
information (count: 1417 )
Associated
traits (count: 131 )

Variant overlapped rSNPs/rCNVs (count:1417 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9268059	chr6:32230678-32230679	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs144318729	chr6:32230709-32230710	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
3	rs28895019	chr6:32230720-32230721	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs553447733	chr6:32230724-32230725	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
5	rs3132973	chr6:32230732-32230733	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs541898095	chr6:32230735-32230736	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
7	rs3130329	chr6:32230779-32230780	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs530807116	chr6:32230818-32230819	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs3130330	chr6:32230824-32230825	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs564577439	chr6:32230868-32230869	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs559573353	chr6:32230907-32230908	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs558219134	chr6:32230908-32230909	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs118035046	chr6:32230927-32230928	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs143775956	chr6:32230930-32230931	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs4959091	chr6:32231014-32231015	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs3115564	chr6:32231085-32231086	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs192960535	chr6:32231086-32231087	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
18	rs536997354	chr6:32231087-32231088	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
19	rs62402977	chr6:32231102-32231103	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs570618655	chr6:32231106-32231107	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
21	rs373280606	chr6:32231127-32231128	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
22	rs549617254	chr6:32231206-32231207	Weak transcription Strong transcription ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
23	rs552919184	chr6:32231245-32231246	Weak transcription Strong transcription ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
24	rs574559055	chr6:32231249-32231250	Weak transcription Strong transcription ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
25	rs561503380	chr6:32231269-32231270	Weak transcription Strong transcription ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
26	rs183948752	chr6:32231296-32231297	Weak transcription Strong transcription ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
27	rs117913475	chr6:32231297-32231298	Weak transcription Strong transcription ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
28	rs3132926	chr6:32231313-32231314	Weak transcription Strong transcription ZNF genes & repeats Active TSS	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs116007844	chr6:32231334-32231335	Weak transcription Strong transcription ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
30	rs564820352	chr6:32231378-32231379	Weak transcription Strong transcription ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
31	rs528755597	chr6:32231379-32231380	Weak transcription Strong transcription ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
32	rs3132927	chr6:32231407-32231408	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs141092195	chr6:32231467-32231468	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
34	rs76780735	chr6:32231481-32231482	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
35	rs3130331	chr6:32231483-32231484	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs536312026	chr6:32231484-32231485	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
37	rs146967073	chr6:32231517-32231518	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
38	rs3130332	chr6:32231547-32231548	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs187830223	chr6:32231609-32231610	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs375688801	chr6:32231639-32231640	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs551858620	chr6:32231642-32231643	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs369417346	chr6:32231673-32231674	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs115461075	chr6:32231694-32231695	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs558617602	chr6:32231726-32231727	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs546862867	chr6:32231744-32231745	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs7776387	chr6:32231759-32231760	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs373251160	chr6:32231767-32231768	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs137993152	chr6:32231768-32231769	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs575300948	chr6:32231790-32231791	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs539845417	chr6:32231828-32231829	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:131)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Lung cancer	18438408	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ovarian cancer	21781307	CNVD
Ependymoma	19289631	CNVD
Breast cancer	22844521	CNVD
Gestational infection	22844521	CNVD
HIV/AIDS	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
abnormal development	18461090	CNVD
Melanoma	17363583	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Myelofibrosis	22110671	CNVD
Incontinentia Pigmenti	22033527	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Encephalopathy	20692195	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Immune disease	17576883	CNVD
Multiple myeloma	16616336	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32223600-32230800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:32223600-32231200	Weak transcription	Spleen	Spleen
3	chr6:32223800-32230800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:32224000-32233800	Weak transcription	Fetal Lung	lung
5	chr6:32224000-32233800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:32224400-32241000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:32230400-32231600	ZNF genes & repeats	Fetal Stomach	stomach
8	chr6:32230600-32230800	ZNF genes & repeats	Brain Germinal Matrix	brain
9	chr6:32230600-32231600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:32230600-32231600	Strong transcription	Ovary	ovary
11	chr6:32230800-32231000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:32230800-32231400	ZNF genes & repeats	Fetal Brain Female	brain
13	chr6:32230800-32231600	Strong transcription	Fetal Muscle Trunk	muscle
14	chr6:32230800-32232200	Weak transcription	Brain Germinal Matrix	brain
15	chr6:32231000-32246800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:32231200-32231400	Active TSS	Spleen	Spleen
17	chr6:32231400-32231800	Weak transcription	Fetal Brain Female	brain
18	chr6:32231600-32233200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:32231600-32235400	Weak transcription	Ovary	ovary
20	chr6:32231600-32237200	Weak transcription	Fetal Stomach	stomach
21	chr6:32231600-32244200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:32233800-32234000	ZNF genes & repeats	Fetal Lung	lung
23	chr6:32233800-32234000	ZNF genes & repeats	Fetal Muscle Leg	muscle
24	chr6:32234000-32234400	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:32234000-32238200	Weak transcription	Fetal Lung	lung
26	chr6:32234400-32236200	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr6:32234400-32242200	Enhancers	Primary B cells from peripheral blood	blood
28	chr6:32234600-32236000	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr6:32234600-32237000	Enhancers	GM12878-XiMat	blood
30	chr6:32234600-32238800	Enhancers	Primary B cells from cord blood	blood
31	chr6:32236000-32238600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr6:32236200-32238600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr6:32237000-32238400	Weak transcription	GM12878-XiMat	blood
34	chr6:32238200-32239400	Strong transcription	Fetal Lung	lung
35	chr6:32238400-32238800	Enhancers	GM12878-XiMat	blood
36	chr6:32238400-32239400	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr6:32238600-32239200	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr6:32238600-32239800	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr6:32238600-32240000	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr6:32238600-32240800	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr6:32238800-32239200	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr6:32238800-32239200	Flanking Active TSS	GM12878-XiMat	blood
43	chr6:32238800-32239400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr6:32238800-32239400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:32238800-32239600	Enhancers	Primary T cells from cord blood	blood
46	chr6:32238800-32239600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:32238800-32239600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr6:32238800-32240000	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr6:32238800-32240000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:32239200-32240000	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links