Variant report

Variant	nsv884738
Chromosome Location	chr6:32343369-32357133
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:32354511-32354580	GM13976	blood:	n/a	n/a
2	EBF1	chr6:32344047-32344247	GM12878	blood:	n/a	chr6:32344133-32344144
3	EP300	chr6:32345420-32345547	K562	blood:	n/a	n/a
4	FAM48A	chr6:32344986-32345116	GM12878	blood:	n/a	n/a
5	JUN	chr6:32347922-32347971	H1-hESC	embryonic stem cell:	n/a	n/a
6	NR2F2	chr6:32351969-32352346	K562	blood:	n/a	n/a
7	NR2F2	chr6:32351968-32352458	K562	blood:	n/a	n/a
8	PAX5	chr6:32353611-32353830	GM12878	blood:	n/a	n/a
9	PAX5	chr6:32353549-32353861	GM12878	blood:	n/a	n/a
10	PAX5	chr6:32353612-32353748	GM12878	blood:	n/a	n/a
11	PAX5	chr6:32353589-32353827	GM12878	blood:	n/a	n/a
12	SPI1	chr6:32350513-32350927	HL-60	blood:	n/a	n/a
13	SPI1	chr6:32355438-32355652	GM12891	blood:	n/a	chr6:32355546-32355553

No.	Distal block	Cell Line	Cell type
1	chr6:32353057..32355376-chr6:32358094..32359771,3	MCF-7	breast:
2	chr6:32341767..32343740-chr6:32372075..32373920,2	K562	blood:
3	chr6:32338535..32340842-chr6:32342130..32344081,2	K562	blood:

Variant related genes	Relation type
C6orf10	TF binding region
HCG23	TF binding region
ENSG00000204296	chromatin interactions
ENSG00000228962	chromatin interactions

Extended variants
information (count: 511 )
Associated
traits (count: 125 )

Variant overlapped rSNPs/rCNVs (count:511 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3117106	chr6:32343369-32343370	Strong transcription Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs559564963	chr6:32343374-32343375	Strong transcription Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs9268416	chr6:32343384-32343385	Strong transcription Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs191925011	chr6:32343404-32343405	Strong transcription Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs142868572	chr6:32343476-32343477	Strong transcription Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs531279283	chr6:32343541-32343542	Strong transcription Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs112756233	chr6:32343546-32343547	Strong transcription Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs111631355	chr6:32343562-32343563	Strong transcription Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs72843268	chr6:32343575-32343576	Strong transcription Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs62402697	chr6:32343588-32343589	Strong transcription Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs13201101	chr6:32343604-32343605	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs183031521	chr6:32343605-32343606	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs9268417	chr6:32343616-32343617	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs536436034	chr6:32343664-32343665	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs9268418	chr6:32343686-32343687	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs376826419	chr6:32343693-32343694	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs3117105	chr6:32343714-32343715	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs114445199	chr6:32343715-32343716	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs28869508	chr6:32343735-32343736	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs577164099	chr6:32343736-32343737	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs17208517	chr6:32343743-32343744	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs17208524	chr6:32343757-32343758	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs114942820	chr6:32343780-32343781	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs9268420	chr6:32343796-32343797	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs563493137	chr6:32343798-32343799	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs553731930	chr6:32343845-32343846	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs9268421	chr6:32343869-32343870	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
28	rs9268422	chr6:32343873-32343874	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs9268423	chr6:32343882-32343883	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs575696988	chr6:32343899-32343900	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs547748130	chr6:32343902-32343903	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs565996396	chr6:32343952-32343953	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs536524950	chr6:32343955-32343956	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs545933587	chr6:32343964-32343965	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs17202190	chr6:32343979-32343980	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs9268424	chr6:32343985-32343986	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs13201792	chr6:32344044-32344045	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs2395152	chr6:32344095-32344096	Enhancers Strong transcription Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
39	rs570856313	chr6:32344130-32344131	Enhancers Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs17208559	chr6:32344193-32344194	Enhancers Strong transcription Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs372129404	chr6:32344198-32344199	Enhancers Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs187611304	chr6:32344277-32344278	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs574795186	chr6:32344287-32344288	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs192474853	chr6:32344300-32344301	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs116239570	chr6:32344331-32344332	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs62402698	chr6:32344346-32344347	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs568719360	chr6:32344358-32344359	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs9268425	chr6:32344376-32344377	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
49	rs115942375	chr6:32344393-32344394	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs551473455	chr6:32344403-32344404	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:125)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Lung cancer	18438408	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22844521	CNVD
Gestational infection	22844521	CNVD
HIV/AIDS	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Ovarian cancer	21781307	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
abnormal development	18461090	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Myelofibrosis	22110671	CNVD
Incontinentia Pigmenti	22033527	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Encephalopathy	20692195	CNVD
Immune disease	17576883	CNVD
Multiple myeloma	16616336	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32341400-32345000	Enhancers	Duodenum Mucosa	Duodenum
2	chr6:32341800-32343400	Weak transcription	Fetal Stomach	stomach
3	chr6:32342800-32355200	Weak transcription	Stomach Mucosa	stomach
4	chr6:32343200-32343400	Enhancers	Small Intestine	intestine
5	chr6:32343200-32344200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:32343400-32344000	Strong transcription	Fetal Stomach	stomach
7	chr6:32343600-32344200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:32343800-32344400	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:32344000-32361400	Weak transcription	Fetal Stomach	stomach
10	chr6:32344200-32345800	Enhancers	Fetal Intestine Large	intestine
11	chr6:32344200-32345800	Enhancers	Fetal Intestine Small	intestine
12	chr6:32344200-32346200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:32345000-32345200	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr6:32345200-32345600	Active TSS	Duodenum Mucosa	Duodenum
15	chr6:32345600-32345800	Enhancers	Duodenum Mucosa	Duodenum
16	chr6:32345800-32355000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:32350400-32350800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:32351400-32365000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:32354800-32356000	Enhancers	GM12878-XiMat	blood
20	chr6:32354800-32356200	Enhancers	Fetal Intestine Small	intestine
21	chr6:32355000-32355600	Enhancers	Small Intestine	intestine
22	chr6:32355000-32356000	Enhancers	Primary B cells from peripheral blood	blood
23	chr6:32355000-32356400	Enhancers	Duodenum Mucosa	Duodenum
24	chr6:32355200-32356200	Enhancers	Stomach Mucosa	stomach
25	chr6:32355400-32355600	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr6:32355400-32356000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:32355400-32356200	Enhancers	Fetal Intestine Large	intestine
28	chr6:32355600-32358000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:32355800-32356400	Enhancers	Fetal Lung	lung
30	chr6:32356000-32357200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:32356000-32358000	Weak transcription	GM12878-XiMat	blood
32	chr6:32356000-32361400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr6:32356400-32364200	Weak transcription	Fetal Lung	lung
34	chr6:32356800-32360800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links