Variant report

Variant	nsv885800
Chromosome Location	chr6:35394247-35406153
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:148)
CpG islands
(count:122)
Chromatin interactive
region (count:12)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:148 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:35396271-35396729	HepG2	liver:	n/a	n/a
2	BHLHE40	chr6:35396260-35396788	HepG2	liver:	n/a	n/a
3	BRCA1	chr6:35396384-35396854	HepG2	liver:	n/a	n/a
4	CBX3	chr6:35396865-35397783	K562	blood:	n/a	n/a
5	CBX3	chr6:35397213-35397703	K562	blood:	n/a	n/a
6	CEBPB	chr6:35395772-35396553	IMR90	lung:	n/a	n/a
7	CEBPB	chr6:35396267-35396685	HepG2	liver:	n/a	n/a
8	CHD2	chr6:35396218-35396343	HepG2	liver:	n/a	n/a
9	CTCF	chr6:35395540-35395690	AG04449	skin:	n/a	n/a
10	CTCF	chr6:35403700-35403850	HepG2	liver:	n/a	chr6:35403773-35403786 chr6:35403771-35403789
11	CTCF	chr6:35395620-35395770	HBMEC	blood vessel:	n/a	n/a
12	CTCF	chr6:35396480-35396630	HMF	breast:	n/a	n/a
13	CTCF	chr6:35395480-35395630	WERI-Rb-1	eye:	n/a	n/a
14	CTCF	chr6:35396540-35396690	AG04449	skin:	n/a	n/a
15	CTCF	chr6:35396540-35396690	HMF	breast:	n/a	n/a
16	CTCF	chr6:35396500-35396650	AG04450	lung:	n/a	n/a
17	CTCF	chr6:35396500-35396650	GM12873	blood:	n/a	n/a
18	CTCF	chr6:35403680-35403830	K562	blood:	n/a	chr6:35403771-35403789 chr6:35403773-35403786
19	CTCF	chr6:35396180-35396330	HepG2	liver:	n/a	chr6:35396191-35396200 chr6:35396231-35396244 chr6:35396229-35396238
20	CTCF	chr6:35403500-35403650	HepG2	liver:	n/a	n/a
21	CTCF	chr6:35395500-35395650	HPF	lung:	n/a	n/a
22	CTCF	chr6:35396540-35396690	HBMEC	blood vessel:	n/a	n/a
23	CTCF	chr6:35395571-35395617	H1-hESC	embryonic stem cell:	n/a	n/a
24	CTCF	chr6:35403627-35403888	K562	blood:	n/a	chr6:35403771-35403789 chr6:35403773-35403786
25	CTCF	chr6:35396060-35396210	HCPEpiC	choroid plexus:	n/a	chr6:35396191-35396200
26	CTCF	chr6:35395480-35395630	AG04449	skin:	n/a	n/a
27	CTCF	chr6:35403711-35403848	K562	blood:	n/a	chr6:35403771-35403789 chr6:35403773-35403786
28	CTCF	chr6:35396520-35396670	HepG2	liver:	n/a	n/a
29	CTCF	chr6:35396540-35396690	HepG2	liver:	n/a	n/a
30	CTCF	chr6:35396530-35396587	IMR90	lung:	n/a	n/a
31	CTCF	chr6:35396520-35396670	AG04449	skin:	n/a	n/a
32	CTCF	chr6:35396500-35396650	HCPEpiC	choroid plexus:	n/a	n/a
33	E2F4	chr6:35396527-35396683	MCF10A-Er-Src	breast:	n/a	n/a
34	EP300	chr6:35396174-35396675	HepG2	liver:	n/a	n/a
35	EP300	chr6:35396120-35396817	HepG2	liver:	n/a	n/a
36	EP300	chr6:35396170-35396644	HepG2	liver:	n/a	n/a
37	FOS	chr6:35395890-35396105	MCF10A-Er-Src	breast:	n/a	chr6:35395969-35395979 chr6:35395969-35395979 chr6:35395969-35395979 chr6:35395968-35395979 chr6:35395969-35395979
38	FOS	chr6:35395412-35396723	HUVEC	blood vessel:	n/a	chr6:35395969-35395979 chr6:35395969-35395979 chr6:35395969-35395979 chr6:35395968-35395979 chr6:35395969-35395979
39	FOS	chr6:35395901-35396082	MCF10A-Er-Src	breast:	n/a	chr6:35395969-35395979 chr6:35395969-35395979 chr6:35395969-35395979 chr6:35395968-35395979 chr6:35395969-35395979
40	FOSL2	chr6:35395908-35396928	HepG2	liver:	n/a	chr6:35395969-35395979 chr6:35395969-35395979 chr6:35395969-35395979 chr6:35395969-35395979
41	FOSL2	chr6:35396158-35396787	HepG2	liver:	n/a	n/a
42	FOXA1	chr6:35396143-35396887	HepG2	liver:	n/a	n/a
43	FOXA1	chr6:35396103-35396754	HepG2	liver:	n/a	n/a
44	FOXA1	chr6:35396182-35396763	HepG2	liver:	n/a	n/a
45	FOXA1	chr6:35396094-35396770	HepG2	liver:	n/a	n/a
46	FOXA2	chr6:35396204-35396709	HepG2	liver:	n/a	n/a
47	FOXA2	chr6:35395882-35397072	HepG2	liver:	n/a	n/a
48	GATA3	chr6:35402961-35403392	MCF-7	breast:	n/a	n/a
49	GATA3	chr6:35402807-35403375	MCF-7	breast:	n/a	n/a
50	HDAC2	chr6:35396162-35396694	HepG2	liver:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:35395209-35395259	HepG2	liver:	n/a
2	chr6:35403738-35403788	HRPEpiC	eye:	n/a
3	chr6:35403738-35403788	ECC-1	luminal epithelium:	n/a
4	chr6:35395209-35395259	HMEC	breast:	n/a
5	chr6:35403738-35403788	LNCaP	prostate:	n/a
6	chr6:35395209-35395259	K562	blood:	n/a
7	chr6:35395209-35395259	NT2-D1	testis:	n/a
8	chr6:35403738-35403788	HL-60	blood:	n/a
9	chr6:35403738-35403788	BE2_C	brain:	n/a
10	chr6:35395209-35395259	ovcar-3	ovarian:	n/a
11	chr6:35395209-35395259	CMK	blood:	n/a
12	chr6:35395209-35395259	GM06990	blood:	n/a
13	chr6:35403738-35403788	AG10803	skin:	n/a
14	chr6:35395209-35395259	MCF10A-Er-Src	breast:	n/a
15	chr6:35395209-35395259	HCM	heart:	n/a
16	chr6:35403738-35403788	GM12878	blood:	n/a
17	chr6:35403738-35403788	U87	brain:	n/a
18	chr6:35403738-35403788	BJ	skin:	n/a
19	chr6:35403738-35403788	IMR90	lung:	fetal
20	chr6:35403738-35403788	NHDF-neo	bronchial:	n/a
21	chr6:35395209-35395259	AG04450	lung:	fetal
22	chr6:35403738-35403788	HCT-116	colon:	n/a
23	chr6:35395209-35395259	HCT-116	colon:	n/a
24	chr6:35403738-35403788	HRCEpiC	kidney:	n/a
25	chr6:35403738-35403788	NH-A	brain:	n/a
26	chr6:35403738-35403788	SKMC	muscle:	n/a
27	chr6:35403738-35403788	AG09309	skin:	n/a
28	chr6:35403738-35403788	GM06990	blood:	n/a
29	chr6:35395209-35395259	HRPEpiC	eye:	n/a
30	chr6:35395209-35395259	HRE	kidney:	n/a
31	chr6:35403738-35403788	Caco-2	colon:	n/a
32	chr6:35395209-35395259	PrEC	prostate:	n/a
33	chr6:35403738-35403788	GM12892	blood:	n/a
34	chr6:35395209-35395259	AG04449	skin:	fetal
35	chr6:35395209-35395259	H1-hESC	embryonic stem cell:	embryo
36	chr6:35403738-35403788	K562	blood:	n/a
37	chr6:35403738-35403788	HEK293	kidney:	embryo
38	chr6:35403738-35403788	GM19239	blood:	n/a
39	chr6:35395209-35395259	PFSK-1	brain:	n/a
40	chr6:35395209-35395259	SK-N-MC	brain:	n/a
41	chr6:35395209-35395259	HEEpiC	esophagus:	n/a
42	chr6:35395209-35395259	BJ	skin:	n/a
43	chr6:35403738-35403788	PrEC	prostate:	n/a
44	chr6:35395209-35395259	RPTEC	kidney:	n/a
45	chr6:35403738-35403788	GM12891	blood:	n/a
46	chr6:35395209-35395259	HRCEpiC	kidney:	n/a
47	chr6:35395209-35395259	AG09309	skin:	n/a
48	chr6:35403738-35403788	HepG2	liver:	n/a
49	chr6:35403738-35403788	AG04450	lung:	fetal
50	chr6:35403738-35403788	NT2-D1	testis:	n/a

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35380537..35383478-chr6:35394277..35398227,3	K562	blood:
2	chr6:35405229..35407792-chr6:35409420..35411171,2	MCF-7	breast:
3	chr6:35395055..35396641-chr6:35399730..35402095,2	MCF-7	breast:
4	chr6:35403150..35406143-chr6:35419979..35421585,2	MCF-7	breast:
5	chr6:35310264..35312853-chr6:35403598..35406051,2	K562	blood:
6	chr6:35265080..35265878-chr6:35403707..35404212,2	MCF-7	breast:
7	chr6:35226026..35228002-chr6:35394504..35397292,2	K562	blood:
8	chr6:35401564..35403389-chr6:35434322..35438039,3	K562	blood:
9	chr6:35390023..35392138-chr6:35401114..35403193,2	K562	blood:
10	chr6:35388873..35391570-chr6:35394373..35396733,2	MCF-7	breast:
11	chr6:35395055..35396641-chr6:35399730..35402095,2	MCF-7	breast:
12	chr6:35390370..35392093-chr6:35395033..35397221,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FANCE-1	chr6:35394662-35394997	NONHSAT112179
2	lnc-PPARD-2	chr6:35399993-35400219	NONHSAT112181
3	lnc-PPARD-1	chr6:35397970-35398533	NONHSAT112180

No data

Variant related genes	Relation type
ENSG00000227154	TF binding region
ENSG00000227154	CpG island
ENSG00000198755	chromatin interactions
ENSG00000023892	chromatin interactions
ENSG00000065029	chromatin interactions
ENSG00000112039	chromatin interactions
ENSG00000112033	chromatin interactions
ENSG00000227154	chromatin interactions

Extended variants
information (count: 567 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:567 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9658168	chr6:35394247-35394248	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs200391460	chr6:35394260-35394261	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs200996166	chr6:35394269-35394270	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs536316020	chr6:35394304-35394305	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs191172020	chr6:35394308-35394309	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs201962025	chr6:35394333-35394334	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs200422292	chr6:35394352-35394353	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs570085469	chr6:35394354-35394355	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs201459821	chr6:35394365-35394366	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs199574588	chr6:35394367-35394368	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs200421322	chr6:35394377-35394378	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs201468320	chr6:35394382-35394383	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs199855568	chr6:35394386-35394387	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs558516477	chr6:35394396-35394397	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs577059360	chr6:35394397-35394398	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs200623190	chr6:35394423-35394424	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs201455626	chr6:35394427-35394428	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs534926010	chr6:35394432-35394433	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs34735061	chr6:35394436-35394437	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs199537437	chr6:35394439-35394440	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs200943709	chr6:35394440-35394441	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs74806287	chr6:35394443-35394444	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs574509586	chr6:35394454-35394455	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs9658169	chr6:35394489-35394490	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs201744699	chr6:35394491-35394492	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs9658170	chr6:35394504-35394505	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs201073235	chr6:35394533-35394534	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs563382262	chr6:35394535-35394536	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs201656538	chr6:35394537-35394538	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs200113596	chr6:35394595-35394596	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs148098583	chr6:35394596-35394597	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs9658171	chr6:35394598-35394599	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs17847856	chr6:35394609-35394610	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs9658172	chr6:35394610-35394611	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs201127360	chr6:35394617-35394618	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs202166822	chr6:35394642-35394643	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs200496552	chr6:35394643-35394644	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs201418104	chr6:35394648-35394649	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs199549196	chr6:35394657-35394658	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs200368320	chr6:35394670-35394671	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
41	rs9658173	chr6:35394671-35394672	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs199616216	chr6:35394694-35394695	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
43	rs200717927	chr6:35394701-35394702	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
44	rs201475851	chr6:35394711-35394712	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
45	rs199779515	chr6:35394729-35394730	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
46	rs45621342	chr6:35394738-35394739	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
47	rs201702417	chr6:35394747-35394748	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
48	rs540174346	chr6:35394753-35394754	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
49	rs182544857	chr6:35394763-35394764	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
50	rs371395642	chr6:35394764-35394765	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Hepatocellular carcinoma	16750200	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:426 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35377800-35395000	Weak transcription	K562	blood
2	chr6:35383000-35394600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:35383000-35396800	Weak transcription	Right Atrium	heart
4	chr6:35383400-35394800	Weak transcription	Fetal Kidney	kidney
5	chr6:35383400-35396600	Weak transcription	Stomach Mucosa	stomach
6	chr6:35383600-35402600	Weak transcription	Fetal Heart	heart
7	chr6:35387400-35395200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:35387600-35394800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:35387600-35395200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:35387600-35395200	Strong transcription	Stomach Smooth Muscle	stomach
11	chr6:35387800-35394600	Strong transcription	Fetal Stomach	stomach
12	chr6:35387800-35396000	Strong transcription	Fetal Intestine Small	intestine
13	chr6:35388000-35395600	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr6:35388000-35396000	Strong transcription	Fetal Muscle Leg	muscle
15	chr6:35388200-35395200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr6:35389200-35395200	Strong transcription	Duodenum Mucosa	Duodenum
17	chr6:35389200-35395400	Strong transcription	Fetal Intestine Large	intestine
18	chr6:35389200-35396000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:35389400-35394600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:35389400-35394800	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:35389400-35394800	Strong transcription	Brain Substantia Nigra	brain
22	chr6:35389400-35395000	Strong transcription	Rectal Smooth Muscle	rectum
23	chr6:35389400-35395200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:35389400-35395200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:35389400-35395600	Strong transcription	Primary T cells from cord blood	blood
26	chr6:35389400-35395600	Strong transcription	Brain Cingulate Gyrus	brain
27	chr6:35389400-35395600	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:35389400-35395800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr6:35389600-35394600	Strong transcription	Fetal Lung	lung
30	chr6:35389600-35394600	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr6:35389600-35395200	Strong transcription	Left Ventricle	heart
32	chr6:35389600-35395400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:35389600-35395600	Strong transcription	Brain Anterior Caudate	brain
34	chr6:35389600-35395600	Strong transcription	Brain Hippocampus Middle	brain
35	chr6:35389600-35396200	Strong transcription	Gastric	stomach
36	chr6:35390400-35395200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr6:35390400-35396000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr6:35391400-35394600	Strong transcription	Aorta	Aorta
39	chr6:35391400-35395000	Strong transcription	Fetal Brain Female	brain
40	chr6:35391400-35395000	Strong transcription	Pancreas	Pancrea
41	chr6:35391400-35395600	Strong transcription	Colonic Mucosa	Colon
42	chr6:35391400-35396000	Strong transcription	Thymus	Thymus
43	chr6:35391400-35396400	Strong transcription	Right Ventricle	heart
44	chr6:35391600-35394600	Strong transcription	Brain Angular Gyrus	brain
45	chr6:35391600-35394800	Strong transcription	Liver	Liver
46	chr6:35391600-35395000	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:35391600-35395000	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr6:35391600-35395200	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr6:35391600-35395600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:35391800-35395600	Strong transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links