Variant report

Variant	nsv885885
Chromosome Location	chr6:53920024-54046264
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:53962447-53962872	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:54000571-54001192	HepG2	liver:	n/a	n/a
3	BACH1	chr6:53936826-53937112	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr6:53968331-53968637	K562	blood:	n/a	n/a
5	BACH1	chr6:53968321-53968664	H1-hESC	embryonic stem cell:	n/a	n/a
6	BHLHE40	chr6:53962611-53962857	HepG2	liver:	n/a	n/a
7	BHLHE40	chr6:53972403-53972554	HepG2	liver:	n/a	chr6:53972454-53972463 chr6:53972454-53972463 chr6:53972455-53972464 chr6:53972448-53972469
8	CEBPB	chr6:53921912-53922227	HepG2	liver:	n/a	chr6:53922081-53922094 chr6:53922081-53922092 chr6:53922082-53922093 chr6:53922081-53922094 chr6:53922081-53922092
9	CEBPB	chr6:54035385-54035738	HepG2	liver:	n/a	chr6:54035563-54035574
10	CEBPB	chr6:54000804-54001144	HepG2	liver:	n/a	n/a
11	CEBPB	chr6:54000781-54001160	Hela-S3	cervix:	n/a	chr6:54001140-54001152
12	CEBPB	chr6:54000686-54001217	HCT-116	colon:	n/a	chr6:54001140-54001152
13	CEBPB	chr6:54000793-54001084	ECC-1	luminal epithelium:	n/a	n/a
14	CEBPB	chr6:53984491-53984712	HepG2	liver:	n/a	chr6:53984572-53984583
15	CEBPB	chr6:53937815-53937982	H1-hESC	embryonic stem cell:	n/a	n/a
16	CEBPB	chr6:53962546-53962803	Hela-S3	cervix:	n/a	chr6:53962727-53962738 chr6:53962716-53962727
17	CEBPB	chr6:53941019-53941213	IMR90	lung:	n/a	n/a
18	CEBPB	chr6:54021570-54021811	H1-hESC	embryonic stem cell:	n/a	chr6:54021669-54021680
19	CEBPB	chr6:54000729-54001186	A549	lung:	n/a	chr6:54001140-54001152
20	CEBPB	chr6:54021515-54021861	HepG2	liver:	n/a	chr6:54021669-54021680
21	CEBPB	chr6:54021521-54021860	IMR90	lung:	n/a	chr6:54021669-54021680
22	CEBPB	chr6:54021522-54021851	Hela-S3	cervix:	n/a	chr6:54021669-54021680
23	CEBPB	chr6:53936979-53937060	A549	lung:	n/a	chr6:53937019-53937030
24	CEBPB	chr6:53962549-53962950	HepG2	liver:	n/a	chr6:53962727-53962738 chr6:53962716-53962727
25	CEBPB	chr6:54000759-54001219	ECC-1	luminal epithelium:	n/a	chr6:54001140-54001152
26	CEBPB	chr6:53941007-53941256	HepG2	liver:	n/a	n/a
27	CEBPB	chr6:53962398-53962934	HepG2	liver:	n/a	chr6:53962727-53962738 chr6:53962716-53962727
28	CEBPB	chr6:53999730-54000040	IMR90	lung:	n/a	chr6:53999861-53999874 chr6:53999861-53999874 chr6:53999863-53999874 chr6:53999863-53999874 chr6:53999861-53999872
29	CEBPB	chr6:54021630-54021782	K562	blood:	n/a	chr6:54021669-54021680
30	CEBPB	chr6:54021570-54021851	A549	lung:	n/a	chr6:54021669-54021680
31	CEBPB	chr6:53962535-53962901	HepG2	liver:	n/a	chr6:53962727-53962738 chr6:53962716-53962727
32	CEBPB	chr6:53937860-53938018	HepG2	liver:	n/a	n/a
33	CEBPB	chr6:54008035-54008201	HepG2	liver:	n/a	chr6:54008071-54008082
34	CEBPB	chr6:53936747-53937174	IMR90	lung:	n/a	chr6:53937019-53937030
35	CEBPB	chr6:54000830-54001154	MCF-7	breast:	n/a	chr6:54001140-54001152
36	CEBPB	chr6:53925120-53925332	Hela-S3	cervix:	n/a	n/a
37	CEBPB	chr6:53962505-53962816	A549	lung:	n/a	chr6:53962727-53962738 chr6:53962716-53962727
38	CEBPB	chr6:53936663-53937131	HepG2	liver:	n/a	chr6:53937019-53937030
39	CEBPB	chr6:54013296-54013543	HepG2	liver:	n/a	chr6:54013402-54013413
40	CEBPB	chr6:53925043-53925338	IMR90	lung:	n/a	n/a
41	CEBPB	chr6:54037561-54037646	IMR90	lung:	n/a	n/a
42	CEBPB	chr6:53936791-53937133	H1-hESC	embryonic stem cell:	n/a	chr6:53937019-53937030
43	CEBPB	chr6:53999774-54000050	HepG2	liver:	n/a	chr6:53999861-53999874 chr6:53999861-53999874 chr6:53999863-53999874 chr6:53999863-53999874 chr6:53999861-53999872
44	CEBPB	chr6:53962593-53962858	HepG2	liver:	n/a	chr6:53962727-53962738 chr6:53962716-53962727
45	CEBPB	chr6:54000822-54001146	A549	lung:	n/a	n/a
46	CEBPB	chr6:54000889-54001075	HepG2	liver:	n/a	n/a
47	CEBPB	chr6:53922006-53922164	HepG2	liver:	n/a	chr6:53922081-53922094 chr6:53922081-53922092 chr6:53922082-53922093 chr6:53922081-53922094 chr6:53922081-53922092
48	CEBPB	chr6:54000745-54001162	MCF-7	breast:	n/a	chr6:54001140-54001152
49	CEBPD	chr6:53962610-53962878	HepG2	liver:	n/a	chr6:53962728-53962739
50	CEBPZ	chr6:54032136-54032174	HepG2	liver:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:54001868-54001918	HCF	heart:	n/a
2	chr6:54001868-54001918	AG09319	gingival:	n/a
3	chr6:54001895-54001945	ECC-1	luminal epithelium:	n/a
4	chr6:53939321-53939371	MCF-7	breast:	n/a
5	chr6:54001665-54001715	HCT-116	colon:	n/a
6	chr6:54001895-54001945	HCT-116	colon:	n/a
7	chr6:54001895-54001945	SK-N-SH_RA	brain:	n/a
8	chr6:54001895-54001945	AoSMC	blood vessel:	n/a
9	chr6:54001895-54001945	U87	brain:	n/a
10	chr6:54001665-54001715	HCM	heart:	n/a
11	chr6:53950838-53950888	HepG2	liver:	n/a
12	chr6:53939321-53939371	Hela-S3	cervix:	n/a
13	chr6:53950838-53950888	AG04450	lung:	fetal
14	chr6:54001868-54001918	MCF10A-Er-Src	breast:	n/a
15	chr6:54001868-54001918	SKMC	muscle:	n/a
16	chr6:53950838-53950888	H1-hESC	embryonic stem cell:	embryo
17	chr6:54001665-54001715	AG09309	skin:	n/a
18	chr6:54001665-54001715	HCF	heart:	n/a
19	chr6:53950838-53950888	A549	lung:	n/a
20	chr6:53939321-53939371	NHBE	bronchial:	n/a
21	chr6:53939321-53939371	U87	brain:	n/a
22	chr6:53939321-53939371	CMK	blood:	n/a
23	chr6:54001868-54001918	ProgFib	skin:	n/a
24	chr6:54001868-54001918	A549	lung:	n/a
25	chr6:54001665-54001715	NHDF-neo	bronchial:	n/a
26	chr6:53939321-53939371	HMEC	breast:	n/a
27	chr6:53950838-53950888	Hepatocyte	liver:	n/a
28	chr6:54001665-54001715	HepG2	liver:	n/a
29	chr6:54001895-54001945	HAEpiC	amniotic membrane:	n/a
30	chr6:53950838-53950888	BE2_C	brain:	n/a
31	chr6:53950838-53950888	HCM	heart:	n/a
32	chr6:54001868-54001918	HepG2	liver:	n/a
33	chr6:54001665-54001715	T-47D	breast:	n/a
34	chr6:54001895-54001945	Jurkat	blood:	n/a
35	chr6:53939321-53939371	HPAEpiC	pulmonary alveolar:	n/a
36	chr6:54001895-54001945	RPTEC	kidney:	n/a
37	chr6:54001895-54001945	A549	lung:	n/a
38	chr6:54001895-54001945	K562	blood:	n/a
39	chr6:53939321-53939371	ECC-1	luminal epithelium:	n/a
40	chr6:53939321-53939371	AG04450	lung:	fetal
41	chr6:54001868-54001918	SK-N-SH	brain:	n/a
42	chr6:54001665-54001715	GM19239	blood:	n/a
43	chr6:54001665-54001715	SK-N-SH	brain:	n/a
44	chr6:53950838-53950888	GM12892	blood:	n/a
45	chr6:54001665-54001715	AG10803	skin:	n/a
46	chr6:54001665-54001715	NB4	blood:	n/a
47	chr6:53950838-53950888	Hela-S3	cervix:	n/a
48	chr6:53950838-53950888	SK-N-MC	brain:	n/a
49	chr6:53950838-53950888	ProgFib	skin:	n/a
50	chr6:54001665-54001715	GM12892	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:53918180..53920698-chr6:53921750..53923879,2	K562	blood:
2	chr6:53990110..53992835-chr6:54232926..54235323,2	K562	blood:
3	chr6:53918180..53920698-chr6:53921750..53923879,2	K562	blood:
4	chr6:53857425..53857943-chr6:53933277..53933955,2	MCF-7	breast:
5	chr6:53992281..53994885-chr6:54000066..54003038,2	MCF-7	breast:
6	chr6:53992281..53994885-chr6:54000066..54003038,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRC1-8	chr6:53967547-53967621	ucscGeneNc_uc003pce_2
2	lnc-LRRC1-8	chr6:53967721-53970422	ucscGeneNc_uc003pce_2
3	lnc-LRRC1-9	chr6:53975371-53975476	NONHSAT113221
4	lnc-LRRC1-8	chr6:53955515-53955607	NONHSAT113215
5	lnc-KLHL31-3	chr6:53922745-53922798	ENSG00000235050.2
6	lnc-LRRC1-8	chr6:53967547-53967621	NONHSAT113215
7	lnc-KLHL31-3	chr6:53923720-53923768	ENSG00000235050.2
8	lnc-KLHL31-10	chr6:53927195-53927695	NONHSAT113220
9	lnc-LRRC1-8	chr6:53955515-53955607	ucscGeneNc_uc003pce_2
10	lnc-KLHL31-10	chr6:53927754-53927853	NONHSAT113220
11	lnc-KLHL31-3	chr6:53944324-53944524	ENSG00000235050.2
12	lnc-LRRC1-9	chr6:53979728-53979909	NONHSAT113221
13	lnc-LRRC1-9	chr6:53971647-53971816	NONHSAT113221
14	lnc-LRRC1-9	chr6:53973667-53973851	NONHSAT113221
15	lnc-LRRC1-8	chr6:53967721-53970052	NONHSAT113215

Variant related genes	Relation type
MLIP-AS1	TF binding region
MLIP	TF binding region
MLIP-AS1	CpG island
MLIP	CpG island
ENSG00000228231	chromatin interactions

Extended variants
information (count: 4561 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:4561 , 50 per page) page: 1 2 3 4 5 6 7 ... 92

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7739196	chr6:53920024-53920025	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs138116930	chr6:53920042-53920043	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs563403967	chr6:53920046-53920047	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs374918235	chr6:53920114-53920115	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs377114068	chr6:53920197-53920198	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs376998900	chr6:53920202-53920203	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs529353300	chr6:53920210-53920211	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs187540596	chr6:53920230-53920231	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs529435051	chr6:53920300-53920301	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs192403967	chr6:53920359-53920360	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs543227816	chr6:53920363-53920364	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs184997997	chr6:53920417-53920418	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs145663653	chr6:53920458-53920459	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs554926498	chr6:53920462-53920463	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs571983772	chr6:53920469-53920470	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs537600914	chr6:53920560-53920561	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs75220839	chr6:53920576-53920577	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs567904590	chr6:53920582-53920583	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs536336770	chr6:53920594-53920595	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs552827340	chr6:53920595-53920596	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs572776293	chr6:53920597-53920598	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs189576920	chr6:53920667-53920668	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs560837351	chr6:53920706-53920707	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs180832276	chr6:53920749-53920750	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs9357785	chr6:53920771-53920772	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs35240658	chr6:53920803-53920804	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs150589669	chr6:53920825-53920826	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs114178436	chr6:53920828-53920829	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs139547470	chr6:53920829-53920830	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs559611819	chr6:53920895-53920896	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs184515844	chr6:53920922-53920923	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs551492511	chr6:53920962-53920963	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs189837516	chr6:53920985-53920986	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs531226887	chr6:53921084-53921085	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs551336588	chr6:53921117-53921118	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs9474720	chr6:53921127-53921128	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs527687943	chr6:53921128-53921129	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs181294055	chr6:53921137-53921138	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs185714853	chr6:53921147-53921148	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs374279541	chr6:53921164-53921165	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs9474721	chr6:53921165-53921166	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs566462179	chr6:53921215-53921216	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs529333152	chr6:53921231-53921232	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs538590251	chr6:53921294-53921295	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs558135894	chr6:53921321-53921322	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs144275721	chr6:53921331-53921332	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs537742939	chr6:53921338-53921339	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs190572371	chr6:53921352-53921353	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs112075268	chr6:53921357-53921358	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs77501716	chr6:53921384-53921385	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	17603634	CNVD
Neurocytoma	17123091	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Neuroblastoma	19686582	CNVD
Neuroblastoma	17289879	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	16912164	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Glioma	20126413	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:895 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53913600-53926000	Weak transcription	Left Ventricle	heart
2	chr6:53918000-53923200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:53918800-53923200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:53918800-53925200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:53919200-53924000	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:53919400-53928200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:53919600-53920600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:53919600-53920600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:53919600-53921000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:53919600-53921200	Weak transcription	Adipose Nuclei	Adipose
11	chr6:53919600-53921200	Weak transcription	Right Ventricle	heart
12	chr6:53919600-53922400	Weak transcription	Fetal Brain Male	brain
13	chr6:53919600-53922400	Weak transcription	Fetal Intestine Large	intestine
14	chr6:53919600-53923000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:53919600-53923200	Weak transcription	Fetal Intestine Small	intestine
16	chr6:53919600-53923200	Weak transcription	Right Atrium	heart
17	chr6:53919600-53923800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:53919600-53924000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:53919600-53924400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:53919600-53924400	Weak transcription	HUVEC	blood vessel
21	chr6:53919600-53924400	Weak transcription	Osteobl	bone
22	chr6:53919600-53924600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:53919600-53924600	Weak transcription	Hela-S3	cervix
24	chr6:53919600-53924600	Weak transcription	NHLF	lung
25	chr6:53919600-53928200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:53919600-53928400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:53919600-53928400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:53919800-53921000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:53919800-53922000	Enhancers	Psoas Muscle	Psoas
30	chr6:53919800-53925000	Weak transcription	HSMM	muscle
31	chr6:53920000-53921000	Weak transcription	Fetal Heart	heart
32	chr6:53920600-53921400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr6:53920600-53922400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:53921000-53922000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:53921000-53922800	Enhancers	Fetal Heart	heart
36	chr6:53921000-53923200	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr6:53921200-53921600	Enhancers	Right Ventricle	heart
38	chr6:53921200-53922200	Enhancers	Adipose Nuclei	Adipose
39	chr6:53921200-53924600	Enhancers	Liver	Liver
40	chr6:53921400-53926000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr6:53921600-53936600	Weak transcription	Right Ventricle	heart
42	chr6:53921800-53922600	Enhancers	HepG2	liver
43	chr6:53922000-53923000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:53922000-53923000	Weak transcription	Psoas Muscle	Psoas
45	chr6:53922200-53928000	Weak transcription	Adipose Nuclei	Adipose
46	chr6:53922400-53922800	Enhancers	Fetal Brain Male	brain
47	chr6:53922400-53922800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr6:53922400-53924200	Enhancers	Fetal Intestine Large	intestine
49	chr6:53922800-53923800	Flanking Active TSS	Fetal Heart	heart
50	chr6:53922800-53924000	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links