Variant report

Variant	nsv885909
Chromosome Location	chr6:55539010-55674338
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:55578184-55578649	HepG2	liver:	n/a	chr6:55578195-55578211
2	ATF2	chr6:55558889-55559263	H1-hESC	embryonic stem cell:	n/a	n/a
3	BATF	chr6:55569331-55569538	GM12878	blood:	n/a	chr6:55569397-55569408
4	BATF	chr6:55643590-55643849	GM12878	blood:	n/a	n/a
5	BATF	chr6:55578347-55578513	GM12878	blood:	n/a	chr6:55578414-55578425
6	BATF	chr6:55643580-55643815	GM12878	blood:	n/a	n/a
7	BCL11A	chr6:55643604-55643842	GM12878	blood:	n/a	n/a
8	BCL3	chr6:55623396-55623677	GM12878	blood:	n/a	n/a
9	BCL3	chr6:55623407-55623690	GM12878	blood:	n/a	n/a
10	BCL3	chr6:55582873-55583066	GM12878	blood:	n/a	n/a
11	BHLHE40	chr6:55621678-55621921	HepG2	liver:	n/a	n/a
12	BRCA1	chr6:55623064-55623772	Hela-S3	cervix:	n/a	n/a
13	BRCA1	chr6:55639495-55639616	Hela-S3	cervix:	n/a	n/a
14	BRCA1	chr6:55621577-55621686	Hela-S3	cervix:	n/a	n/a
15	CEBPB	chr6:55630453-55630733	A549	lung:	n/a	chr6:55630619-55630630 chr6:55630617-55630630 chr6:55630580-55630597
16	CEBPB	chr6:55623335-55623862	MCF-7	breast:	n/a	n/a
17	CEBPB	chr6:55639553-55639854	A549	lung:	n/a	chr6:55639701-55639714 chr6:55639702-55639713
18	CEBPB	chr6:55563184-55563424	Hela-S3	cervix:	n/a	n/a
19	CEBPB	chr6:55621650-55622218	Hela-S3	cervix:	n/a	n/a
20	CEBPB	chr6:55637698-55637726	A549	lung:	n/a	n/a
21	CEBPB	chr6:55622972-55623857	MCF-7	breast:	n/a	n/a
22	CEBPB	chr6:55639534-55639861	HepG2	liver:	n/a	chr6:55639701-55639714 chr6:55639702-55639713
23	CEBPB	chr6:55630461-55630759	HepG2	liver:	n/a	chr6:55630619-55630630 chr6:55630617-55630630 chr6:55630580-55630597
24	CEBPB	chr6:55630544-55630644	H1-hESC	embryonic stem cell:	n/a	chr6:55630619-55630630 chr6:55630617-55630630 chr6:55630580-55630597
25	CEBPB	chr6:55639176-55639248	K562	blood:	n/a	chr6:55639228-55639245
26	CEBPB	chr6:55630419-55630768	Hela-S3	cervix:	n/a	chr6:55630619-55630630 chr6:55630617-55630630 chr6:55630580-55630597
27	CEBPB	chr6:55623377-55623693	A549	lung:	n/a	n/a
28	CEBPB	chr6:55623228-55623841	A549	lung:	n/a	n/a
29	CEBPB	chr6:55622938-55623832	Hela-S3	cervix:	n/a	n/a
30	CEBPB	chr6:55607261-55607473	HepG2	liver:	n/a	n/a
31	CEBPB	chr6:55539775-55539975	HepG2	liver:	n/a	chr6:55539869-55539880
32	CEBPB	chr6:55639559-55639861	IMR90	lung:	n/a	chr6:55639701-55639714 chr6:55639702-55639713
33	CEBPB	chr6:55639153-55639920	Hela-S3	cervix:	n/a	chr6:55639701-55639714 chr6:55639228-55639245 chr6:55639702-55639713
34	CEBPB	chr6:55543191-55543382	A549	lung:	n/a	n/a
35	CEBPB	chr6:55565320-55565526	HepG2	liver:	n/a	chr6:55565408-55565419
36	CEBPB	chr6:55607243-55608281	Hela-S3	cervix:	n/a	chr6:55607845-55607856 chr6:55607666-55607678 chr6:55607663-55607680 chr6:55607845-55607858
37	CEBPB	chr6:55565263-55565503	IMR90	lung:	n/a	chr6:55565408-55565419
38	CEBPB	chr6:55630299-55630777	A549	lung:	n/a	chr6:55630619-55630630 chr6:55630617-55630630 chr6:55630580-55630597
39	CEBPB	chr6:55630454-55630702	IMR90	lung:	n/a	chr6:55630619-55630630 chr6:55630617-55630630 chr6:55630580-55630597
40	CEBPB	chr6:55642298-55642644	Hela-S3	cervix:	n/a	n/a
41	CEBPB	chr6:55623340-55623727	HepG2	liver:	n/a	n/a
42	CEBPB	chr6:55543182-55543426	HepG2	liver:	n/a	n/a
43	CEBPB	chr6:55623298-55623797	IMR90	lung:	n/a	n/a
44	CEBPB	chr6:55539840-55540025	H1-hESC	embryonic stem cell:	n/a	chr6:55539869-55539880
45	CEBPB	chr6:55581029-55581155	HepG2	liver:	n/a	n/a
46	CEBPB	chr6:55637443-55637978	Hela-S3	cervix:	n/a	n/a
47	CEBPB	chr6:55630404-55630790	MCF-7	breast:	n/a	chr6:55630619-55630630 chr6:55630617-55630630 chr6:55630580-55630597
48	CEBPB	chr6:55639173-55639292	H1-hESC	embryonic stem cell:	n/a	chr6:55639228-55639245
49	CEBPB	chr6:55623332-55623762	A549	lung:	n/a	n/a
50	CEBPB	chr6:55657207-55657261	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:55578522-55578572	A549	lung:	n/a
2	chr6:55578522-55578572	A549	lung:	n/a
3	chr6:55540484-55540534	MCF10A-Er-Src	breast:	n/a
4	chr6:55639442-55639492	NT2-D1	testis:	n/a
5	chr6:55559213-55559263	PrEC	prostate:	n/a
6	chr6:55647893-55647943	SAEC	small airway:	n/a
7	chr6:55647893-55647943	HL-60	blood:	n/a
8	chr6:55639442-55639492	BJ	skin:	n/a
9	chr6:55647893-55647943	PrEC	prostate:	n/a
10	chr6:55647893-55647943	HAEpiC	amniotic membrane:	n/a
11	chr6:55639442-55639492	ECC-1	luminal epithelium:	n/a
12	chr6:55559213-55559263	GM12891	blood:	n/a
13	chr6:55559213-55559263	SK-N-SH	brain:	n/a
14	chr6:55540484-55540534	NT2-D1	testis:	n/a
15	chr6:55647893-55647943	HPAEpiC	pulmonary alveolar:	n/a
16	chr6:55540484-55540534	AG09319	gingival:	n/a
17	chr6:55647893-55647943	GM12878	blood:	n/a
18	chr6:55647893-55647943	Caco-2	colon:	n/a
19	chr6:55578522-55578572	K562	blood:	n/a
20	chr6:55540484-55540534	RPTEC	kidney:	n/a
21	chr6:55559213-55559263	HEEpiC	esophagus:	n/a
22	chr6:55647893-55647943	HCF	heart:	n/a
23	chr6:55559213-55559263	CMK	blood:	n/a
24	chr6:55639442-55639492	IMR90	lung:	fetal
25	chr6:55559213-55559263	NB4	blood:	n/a
26	chr6:55578522-55578572	HEEpiC	esophagus:	n/a
27	chr6:55578522-55578572	MCF-7	breast:	n/a
28	chr6:55540484-55540534	PrEC	prostate:	n/a
29	chr6:55578522-55578572	SKMC	muscle:	n/a
30	chr6:55540484-55540534	H1-hESC	embryonic stem cell:	embryo
31	chr6:55559213-55559263	ProgFib	skin:	n/a
32	chr6:55578522-55578572	T-47D	breast:	n/a
33	chr6:55647893-55647943	GM06990	blood:	n/a
34	chr6:55578522-55578572	AG10803	skin:	n/a
35	chr6:55578522-55578572	GM12891	blood:	n/a
36	chr6:55639442-55639492	SAEC	small airway:	n/a
37	chr6:55578522-55578572	ProgFib	skin:	n/a
38	chr6:55540484-55540534	HUVEC	blood vessel:	n/a
39	chr6:55647893-55647943	U87	brain:	n/a
40	chr6:55559213-55559263	AG09309	skin:	n/a
41	chr6:55540484-55540534	AoSMC	blood vessel:	n/a
42	chr6:55559213-55559263	RPTEC	kidney:	n/a
43	chr6:55647893-55647943	HRPEpiC	eye:	n/a
44	chr6:55639442-55639492	SKMC	muscle:	n/a
45	chr6:55559213-55559263	HCF	heart:	n/a
46	chr6:55540484-55540534	HCF	heart:	n/a
47	chr6:55639442-55639492	MCF10A-Er-Src	breast:	n/a
48	chr6:55647893-55647943	PFSK-1	brain:	n/a
49	chr6:55578522-55578572	SK-N-SH	brain:	n/a
50	chr6:55639442-55639492	HIPEpiC	eye:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:55623116..55625818-chr6:55638380..55641256,2	MCF-7	breast:
2	chr6:55623116..55625818-chr6:55638380..55641256,2	MCF-7	breast:
3	chr6:55573574..55576320-chr6:55577711..55581469,3	MCF-7	breast:
4	chr6:55668603..55669259-chr8:114927462..114928176,2	MCF-7	breast:
5	chr6:55622493..55624357-chr6:55728827..55731064,2	MCF-7	breast:
6	chr6:55546345..55549056-chr6:55558936..55561351,2	K562	blood:
7	chr6:55546345..55549056-chr6:55558936..55561351,2	K562	blood:
8	chr6:55585891..55587904-chr6:55598385..55600180,2	MCF-7	breast:
9	chr13:43439479..43440321-chr6:55595343..55595982,2	MCF-7	breast:
10	chr6:55497542..55498111-chr6:55623067..55623980,2	MCF-7	breast:
11	chr6:55613375..55615360-chr6:55624313..55626846,2	MCF-7	breast:
12	chr6:54711417..54713153-chr6:55620914..55622854,2	MCF-7	breast:
13	chr6:55514122..55516978-chr6:55542279..55544094,2	MCF-7	breast:
14	chr6:55585891..55587904-chr6:55598385..55600180,2	MCF-7	breast:
15	chr6:55573574..55576320-chr6:55577711..55581469,3	MCF-7	breast:
16	chr6:55613375..55615360-chr6:55624313..55626846,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMP5-1	chr6:55545440-55545819	NONHSAT113234

Variant related genes	Relation type
ENSG00000220725	TF binding region
ENSG00000220725	CpG island
ENSG00000168143	chromatin interactions

Extended variants
information (count: 4305 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:4305 , 50 per page) page: 1 2 3 4 5 6 7 ... 87

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7772313	chr6:55539010-55539011	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs555786822	chr6:55539021-55539022	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs73451287	chr6:55539087-55539088	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs527996027	chr6:55539090-55539091	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs548990621	chr6:55539116-55539117	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs72975090	chr6:55539125-55539126	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs554816430	chr6:55539147-55539148	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs7772885	chr6:55539159-55539160	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs115789459	chr6:55539187-55539188	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs560550050	chr6:55539216-55539217	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs532702490	chr6:55539231-55539232	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs148257183	chr6:55539309-55539310	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs11753028	chr6:55539342-55539343	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs180897880	chr6:55539348-55539349	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs548486788	chr6:55539414-55539415	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs141250046	chr6:55539434-55539435	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs79131328	chr6:55539460-55539461	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs201106810	chr6:55539471-55539472	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs368972677	chr6:55539491-55539492	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs7773145	chr6:55539532-55539533	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs9367651	chr6:55539542-55539543	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs570208464	chr6:55539574-55539575	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs114527803	chr6:55539592-55539593	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs138882368	chr6:55539620-55539621	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs142002545	chr6:55539762-55539763	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs146303939	chr6:55539784-55539785	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs139462218	chr6:55539821-55539822	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs539649416	chr6:55539822-55539823	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs149653462	chr6:55539892-55539893	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs553199098	chr6:55539899-55539900	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs375235623	chr6:55539903-55539904	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs575063475	chr6:55539930-55539931	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs115081010	chr6:55539936-55539937	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs572994784	chr6:55539983-55539984	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs144386554	chr6:55540035-55540036	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs577373603	chr6:55540040-55540041	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs546325521	chr6:55540055-55540056	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs562713908	chr6:55540096-55540097	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530228046	chr6:55540165-55540166	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs541957323	chr6:55540173-55540174	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs555451658	chr6:55540189-55540190	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs115859551	chr6:55540206-55540207	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs541893313	chr6:55540231-55540232	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs561995415	chr6:55540271-55540272	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs527636398	chr6:55540297-55540298	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs547179653	chr6:55540322-55540323	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs563946897	chr6:55540325-55540326	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs148780276	chr6:55540351-55540352	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs374226949	chr6:55540369-55540370	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs544142216	chr6:55540380-55540381	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Neurocytoma	17123091	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Neuroblastoma	19686582	CNVD
Neuroblastoma	17289879	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	16912164	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
lymphocytic leukemia	21291569	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:379 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55532400-55542800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:55533600-55540600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:55533800-55539200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:55535000-55543600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:55536600-55540600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:55538200-55539200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr6:55538600-55539400	Enhancers	Fetal Lung	lung
8	chr6:55539200-55539800	Enhancers	Brain Germinal Matrix	brain
9	chr6:55539200-55539800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr6:55539200-55541600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:55539400-55539600	Flanking Active TSS	Fetal Lung	lung
12	chr6:55539400-55540200	Enhancers	Fetal Brain Male	brain
13	chr6:55539600-55539800	Enhancers	Fetal Lung	lung
14	chr6:55539800-55540000	Flanking Active TSS	Fetal Lung	lung
15	chr6:55539800-55540200	Weak transcription	Brain Germinal Matrix	brain
16	chr6:55539800-55540600	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr6:55540000-55542800	Enhancers	Fetal Lung	lung
18	chr6:55540200-55540600	Enhancers	Brain Germinal Matrix	brain
19	chr6:55540200-55540600	Flanking Active TSS	Fetal Brain Male	brain
20	chr6:55540400-55540600	Enhancers	NHDF-Ad	bronchial
21	chr6:55540600-55541200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:55540600-55541200	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr6:55540600-55541400	Active TSS	Fetal Brain Male	brain
24	chr6:55541000-55541400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:55541200-55541400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:55541200-55541400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr6:55541200-55541400	Enhancers	NHDF-Ad	bronchial
28	chr6:55541400-55542400	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr6:55541400-55542800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:55542000-55542200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:55542200-55545200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:55542400-55543400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr6:55542800-55543000	Flanking Active TSS	Fetal Lung	lung
34	chr6:55542800-55544600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:55542800-55545800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:55542800-55545800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:55543000-55543200	Enhancers	Fetal Lung	lung
38	chr6:55543200-55543400	Flanking Active TSS	Fetal Lung	lung
39	chr6:55543200-55544000	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr6:55543200-55544200	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr6:55543200-55544200	Enhancers	Fetal Heart	heart
42	chr6:55543400-55543800	Enhancers	Fetal Lung	lung
43	chr6:55543400-55544000	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr6:55543400-55544000	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr6:55543400-55544000	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr6:55543600-55543800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:55543600-55543800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:55543800-55544000	Flanking Active TSS	Fetal Lung	lung
49	chr6:55543800-55544200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:55543800-55544400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links