Variant report

Variant	nsv885993
Chromosome Location	chr6:64885858-65050050
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:65006449..65008476-chr6:65012080..65014134,2	K562	blood:
2	chr6:64968428..64970654-chr6:64971597..64973561,2	MCF-7	breast:
3	chr6:64898967..64901155-chr6:64903465..64905780,2	K562	blood:
4	chr6:64931220..64933787-chr6:64937129..64939754,2	K562	blood:
5	chr6:65006449..65008476-chr6:65012080..65014134,2	K562	blood:
6	chr6:64990450..64991143-chr6:65442394..65443437,5	MCF-7	breast:
7	chr20:46132660..46133356-chr6:64886601..64887388,2	MCF-7	breast:
8	chr12:81340169..81340734-chr6:64895212..64895734,2	MCF-7	breast:
9	chr6:64898967..64901155-chr6:64903465..64905780,2	K562	blood:
10	chr6:64722104..64722842-chr6:65040545..65041404,3	MCF-7	breast:
11	chr6:64931220..64933787-chr6:64937129..64939754,2	K562	blood:
12	chr6:64968428..64970654-chr6:64971597..64973561,2	MCF-7	breast:

No data

Extended variants
information (count: 2384 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:2384 , 50 per page) page: 1 2 3 4 5 6 7 ... 48

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs13205132	chr6:64885858-64885859	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs543821827	chr6:64885875-64885876	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs13219120	chr6:64885890-64885891	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs533110376	chr6:64885897-64885898	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs144427452	chr6:64885900-64885901	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs187079261	chr6:64885928-64885929	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs563056210	chr6:64895858-64895859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs150950827	chr6:64895860-64895861	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs191180921	chr6:64895871-64895872	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs184768099	chr6:64895918-64895919	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs566865481	chr6:64895972-64895973	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs189273349	chr6:64895981-64895982	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs139502645	chr6:64895984-64895985	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs149702738	chr6:64896038-64896039	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs545008546	chr6:64896129-64896130	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs367616277	chr6:64896136-64896137	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs371267425	chr6:64896141-64896142	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs144948846	chr6:64896142-64896143	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs34727951	chr6:64896176-64896177	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs556188871	chr6:64896178-64896179	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs571393251	chr6:64896236-64896237	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs563956953	chr6:64896255-64896256	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs146663428	chr6:64896265-64896266	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs140261226	chr6:64896329-64896330	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs9344836	chr6:64896397-64896398	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs145138396	chr6:64896419-64896420	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs575641898	chr6:64896429-64896430	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs544841983	chr6:64896471-64896472	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs146881646	chr6:64896475-64896476	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs370022190	chr6:64896476-64896477	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs371762698	chr6:64896490-64896491	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs112094592	chr6:64896573-64896574	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs545305075	chr6:64896599-64896600	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs148972400	chr6:64896603-64896604	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs192222919	chr6:64896650-64896651	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs549510991	chr6:64896651-64896652	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs367868588	chr6:64896703-64896704	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs79769248	chr6:64896738-64896739	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs572174167	chr6:64896776-64896777	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs550017385	chr6:64896777-64896778	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs143775841	chr6:64896805-64896806	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs538804693	chr6:64896806-64896807	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs185165112	chr6:64896823-64896824	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs148147697	chr6:64896824-64896825	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs5876881	chr6:64896825-64896826	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs190012242	chr6:64896832-64896833	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs554245450	chr6:64896835-64896836	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs575603181	chr6:64896881-64896882	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs181314911	chr6:64896883-64896884	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs4326220	chr6:64896909-64896910	Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Cancer	20164920	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Bipolar disorder	19114987	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Epilepsy	20502679	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:176 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64885200-64886000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:64895800-64896400	Enhancers	Fetal Lung	lung
3	chr6:64896400-64897000	Flanking Active TSS	Fetal Lung	lung
4	chr6:64897000-64897800	Enhancers	Fetal Lung	lung
5	chr6:64920600-64921000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:64927400-64927800	Enhancers	GM12878-XiMat	blood
7	chr6:64927600-64928600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:64927600-64928800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:64927600-64928800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:64927600-64929000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:64927600-64929000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr6:64927800-64928200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:64927800-64928200	Enhancers	A549	lung
14	chr6:64927800-64928200	Flanking Active TSS	GM12878-XiMat	blood
15	chr6:64927800-64929000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:64928000-64928400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:64928000-64928600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:64928000-64928800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:64928200-64929200	Enhancers	GM12878-XiMat	blood
20	chr6:64929000-64930800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:64929000-64943800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:64930800-64931400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:64931400-64931800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:64931800-64932000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:64932000-64934000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:64934000-64935400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:64934200-64935800	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr6:64934800-64935000	Enhancers	Fetal Brain Female	brain
29	chr6:64934800-64935200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:64934800-64935200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:64934800-64935400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:64935000-64940400	Weak transcription	Fetal Brain Female	brain
33	chr6:64935800-64939600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:64939400-64939800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:64939400-64939800	Enhancers	Fetal Lung	lung
36	chr6:64939400-64940000	Enhancers	Fetal Heart	heart
37	chr6:64939600-64941000	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr6:64939800-64940000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:64940000-64940600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:64940400-64940600	Enhancers	Fetal Brain Female	brain
41	chr6:64940600-64940800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:64940600-64943200	Weak transcription	Fetal Brain Female	brain
43	chr6:64943800-64944000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:64943800-64944000	Enhancers	Fetal Brain Female	brain
45	chr6:64944000-64944400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:64953200-64954400	Enhancers	Hela-S3	cervix
47	chr6:64954400-64956200	Weak transcription	Hela-S3	cervix
48	chr6:64956200-64956600	Enhancers	Hela-S3	cervix
49	chr6:64956600-64957800	Weak transcription	Hela-S3	cervix
50	chr6:64957800-64960000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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