Variant report

Variant	nsv886073
Chromosome Location	chr6:67589752-67737802
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:67731062..67733775-chr6:67734181..67735767,2	MCF-7	breast:
2	chr6:67620371..67622862-chr6:67622985..67625637,2	K562	blood:
3	chr6:67616212..67617756-chr6:67621376..67624095,2	MCF-7	breast:
4	chr6:67652736..67654313-chr6:67654518..67657198,2	MCF-7	breast:
5	chr6:67680520..67684153-chr6:67686504..67689501,3	MCF-7	breast:
6	chr6:67703812..67706032-chr6:67716375..67719338,2	K562	blood:
7	chr6:67664280..67666953-chr6:67670600..67673248,2	MCF-7	breast:
8	chr6:67680520..67684153-chr6:67686504..67689501,3	MCF-7	breast:
9	chr6:67690651..67692337-chr6:67701670..67703736,2	K562	blood:
10	chr6:67636826..67639519-chr6:67639746..67642162,2	MCF-7	breast:
11	chr6:67616212..67617756-chr6:67621376..67624095,2	MCF-7	breast:
12	chr6:67660837..67662514-chr6:67666593..67669025,2	MCF-7	breast:
13	chr4:106066864..106069364-chr6:67678829..67681478,2	MCF-7	breast:
14	chr6:67690651..67692337-chr6:67701670..67703736,2	K562	blood:
15	chr6:67620371..67622862-chr6:67622985..67625637,2	K562	blood:
16	chr6:67628434..67630192-chr6:67648108..67650563,2	K562	blood:
17	chr6:67641579..67644100-chr6:68068975..68070914,2	K562	blood:
18	chr6:67731062..67733775-chr6:67734181..67735767,2	MCF-7	breast:
19	chr6:67636826..67639519-chr6:67639746..67642162,2	MCF-7	breast:
20	chr6:67660837..67662514-chr6:67666593..67669025,2	MCF-7	breast:
21	chr6:67703812..67706032-chr6:67716375..67719338,2	K562	blood:
22	chr6:67697416..67700217-chr6:67716740..67718720,2	K562	blood:
23	chr6:67664280..67666953-chr6:67670600..67673248,2	MCF-7	breast:
24	chr6:67628434..67630192-chr6:67648108..67650563,2	K562	blood:
25	chr6:67697416..67700217-chr6:67716740..67718720,2	K562	blood:
26	chr6:67652736..67654313-chr6:67654518..67657198,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168769	chromatin interactions

Extended variants
information (count: 1589 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:1589 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs573796852	chr6:67590602-67590603	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs559565675	chr6:67590641-67590642	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs192425481	chr6:67590669-67590670	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs143875465	chr6:67590673-67590674	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs541305818	chr6:67590680-67590681	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs534734836	chr6:67590684-67590685	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs376581540	chr6:67590692-67590693	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs78063891	chr6:67590697-67590698	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs577670530	chr6:67590704-67590705	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs184839513	chr6:67590714-67590715	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs531358767	chr6:67590749-67590750	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs75987101	chr6:67590764-67590765	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs189440297	chr6:67590765-67590766	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs536365711	chr6:67590786-67590787	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs546909172	chr6:67590787-67590788	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs113169089	chr6:67590794-67590795	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs535514364	chr6:67590815-67590816	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs113975019	chr6:67590830-67590831	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs372973960	chr6:67590855-67590856	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs549918891	chr6:67590877-67590878	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs180677503	chr6:67590883-67590884	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs373801367	chr6:67590899-67590900	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs545011170	chr6:67590915-67590916	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs558243931	chr6:67590931-67590932	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs184512539	chr6:67590933-67590934	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs189432270	chr6:67590942-67590943	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs559419031	chr6:67590956-67590957	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs114004254	chr6:67590986-67590987	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs542738360	chr6:67590998-67590999	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs146853200	chr6:67591010-67591011	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs112823752	chr6:67591016-67591017	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs530383497	chr6:67591091-67591092	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs561289771	chr6:67591093-67591094	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs563809109	chr6:67591130-67591131	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs74875552	chr6:67591162-67591163	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs546851564	chr6:67591177-67591178	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs546924233	chr6:67591179-67591180	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs76489263	chr6:67606201-67606202	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs150290740	chr6:67606203-67606204	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs181908177	chr6:67606234-67606235	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs534934298	chr6:67606235-67606236	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs528805237	chr6:67606253-67606254	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs186287703	chr6:67606265-67606266	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs574551470	chr6:67606281-67606282	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs201837609	chr6:67606335-67606336	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs10586655	chr6:67606336-67606337	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs397776295	chr6:67606338-67606339	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs537301417	chr6:67606344-67606345	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs114514456	chr6:67606361-67606362	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs576563067	chr6:67606372-67606373	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:67590600-67591200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:67590600-67591200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:67590600-67591200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:67590800-67591200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:67590800-67591200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
6	chr6:67606200-67607200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:67606200-67608000	Enhancers	NHEK	skin
8	chr6:67606400-67608000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:67606600-67608200	Enhancers	HMEC	breast
10	chr6:67607200-67608200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:67607400-67607800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:67607400-67607800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:67607400-67607800	Enhancers	Adipose Nuclei	Adipose
14	chr6:67607400-67608200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr6:67607600-67608000	Active TSS	Fetal Heart	heart
16	chr6:67607800-67609800	Weak transcription	Adipose Nuclei	Adipose
17	chr6:67609200-67613200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:67609400-67609600	Enhancers	NH-A	brain
19	chr6:67610000-67610600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:67610200-67610400	Enhancers	Adipose Nuclei	Adipose
21	chr6:67610200-67610400	Enhancers	NH-A	brain
22	chr6:67610200-67610600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:67610600-67611600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:67611600-67612000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:67611600-67612200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr6:67611600-67612400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:67621600-67622000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:67631800-67632200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:67632200-67635800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:67633000-67646600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:67634200-67635800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:67636600-67637400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:67637200-67638600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:67637600-67638400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:67638600-67639000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:67639000-67639600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:67639600-67640800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:67639800-67640000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:67639800-67640200	Enhancers	HMEC	breast
40	chr6:67639800-67641400	Enhancers	NHEK	skin
41	chr6:67640000-67640800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:67640000-67641200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:67640800-67641000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:67640800-67641600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:67641400-67643000	Enhancers	Adipose Nuclei	Adipose
46	chr6:67642200-67642600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:67645400-67646000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:67646200-67646600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:67646200-67647200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:67649800-67650600	Enhancers	Fetal Brain Male	brain

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