Variant report

Variant	nsv886086
Chromosome Location	chr6:67704821-67822272
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:67754608..67756147-chr6:67757015..67759750,2	MCF-7	breast:
2	chr6:67782061..67786173-chr6:67786217..67792802,8	K562	blood:
3	chr6:67703812..67706032-chr6:67716375..67719338,2	K562	blood:
4	chr6:67776060..67776970-chr6:67797443..67798057,2	MCF-7	breast:
5	chr6:67782061..67786173-chr6:67786217..67792802,8	K562	blood:
6	chr6:67783004..67786159-chr6:67787646..67791458,3	K562	blood:
7	chr6:67697416..67700217-chr6:67716740..67718720,2	K562	blood:
8	chr6:67776186..67778175-chr6:67786497..67788108,2	K562	blood:
9	chr6:67754608..67756147-chr6:67757015..67759750,2	MCF-7	breast:
10	chr6:67776186..67778175-chr6:67786497..67788108,2	K562	blood:
11	chr6:67754798..67756430-chr6:67760410..67762819,2	MCF-7	breast:
12	chr6:67778065..67781225-chr6:67782008..67784983,4	K562	blood:
13	chr6:67774843..67776777-chr6:69022561..69024613,2	MCF-7	breast:
14	chr6:67779443..67782411-chr6:67785393..67788162,4	K562	blood:
15	chr6:67779443..67782411-chr6:67785393..67788162,4	K562	blood:
16	chr6:67731062..67733775-chr6:67734181..67735767,2	MCF-7	breast:
17	chr6:67783004..67786159-chr6:67787646..67791458,3	K562	blood:
18	chr6:67754798..67756430-chr6:67760410..67762819,2	MCF-7	breast:
19	chr6:67797177..67799198-chr6:67799977..67801822,2	K562	blood:
20	chr6:67767080..67769379-chr6:67772486..67774394,2	K562	blood:
21	chr6:67797177..67799198-chr6:67799977..67801822,2	K562	blood:
22	chr6:67776060..67776970-chr6:67797443..67798057,2	MCF-7	breast:
23	chr6:67778065..67781225-chr6:67782008..67784983,4	K562	blood:
24	chr6:67731062..67733775-chr6:67734181..67735767,2	MCF-7	breast:
25	chr6:67796143..67796843-chr6:68573181..68573682,2	MCF-7	breast:
26	chr6:67703812..67706032-chr6:67716375..67719338,2	K562	blood:
27	chr6:67767080..67769379-chr6:67772486..67774394,2	K562	blood:

No data

Extended variants
information (count: 737 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:737 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574266713	chr6:67718477-67718478	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs144324887	chr6:67718478-67718479	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs561163190	chr6:67718534-67718535	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs529166620	chr6:67718540-67718541	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs542605587	chr6:67718545-67718546	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs562630364	chr6:67718571-67718572	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs6931949	chr6:67718578-67718579	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs371083806	chr6:67718604-67718605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs571379394	chr6:67718637-67718638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs527428746	chr6:67718737-67718738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs547347193	chr6:67718754-67718755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs571028524	chr6:67718757-67718758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs531637086	chr6:67718889-67718890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs536943774	chr6:67718891-67718892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs549861829	chr6:67718964-67718965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs550072082	chr6:67718973-67718974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs187073465	chr6:67719001-67719002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs146572425	chr6:67719010-67719011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs558594170	chr6:67719049-67719050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs191883290	chr6:67719153-67719154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs141278914	chr6:67719154-67719155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs11759582	chr6:67719155-67719156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs373723748	chr6:67719202-67719203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs529835975	chr6:67719204-67719205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs574748644	chr6:67719214-67719215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs542894599	chr6:67719221-67719222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs183387175	chr6:67719230-67719231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs548383607	chr6:67719266-67719267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs188843803	chr6:67719310-67719311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs564959668	chr6:67719340-67719341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs527376768	chr6:67719352-67719353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs547215577	chr6:67719364-67719365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs200959852	chr6:67719419-67719420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs145008281	chr6:67719455-67719456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs113232729	chr6:67719457-67719458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529660680	chr6:67719467-67719468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs566629503	chr6:67719497-67719498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs79687973	chr6:67719498-67719499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs558985358	chr6:67719567-67719568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs570030652	chr6:67719574-67719575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs538982921	chr6:67719575-67719576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs192906491	chr6:67719578-67719579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs377007285	chr6:67719597-67719598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs185521428	chr6:67719682-67719683	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs552542903	chr6:67719693-67719694	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs9453964	chr6:67719742-67719743	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs574745107	chr6:67719750-67719751	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs7754393	chr6:67719757-67719758	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs557424105	chr6:67719758-67719759	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs372540304	chr6:67719793-67719794	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:67718400-67718600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:67718600-67719600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:67719600-67720400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:67719800-67720200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:67719800-67720200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:67720400-67721400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:67721400-67721600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:67737800-67738800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:67738800-67739200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:67740800-67741200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:67741000-67741800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:67741400-67742600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:67741600-67742000	Active TSS	Fetal Kidney	kidney
14	chr6:67741600-67742200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:67741800-67742400	Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr6:67742000-67742400	Active TSS	Primary hematopoietic stem cells	blood
17	chr6:67751200-67752400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:67752400-67752800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:67754400-67754600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:67769400-67769800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:67772400-67775200	Active TSS	K562	blood
22	chr6:67778400-67779800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:67786400-67786800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:67789800-67790200	Enhancers	Liver	Liver
25	chr6:67803800-67804400	Enhancers	Brain Germinal Matrix	brain
26	chr6:67804200-67804600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr6:67805400-67806200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:67805400-67806200	Enhancers	HepG2	liver
29	chr6:67821600-67822800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:67822200-67822800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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