Variant report

Variant	nsv886096
Chromosome Location	chr6:67935071-67968383
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:67937265..67939160-chr6:67944827..67947811,2	K562	blood:
2	chr6:67957680..67959538-chr6:67961788..67963871,2	K562	blood:
3	chr6:67936794..67940215-chr6:67944493..67947517,4	K562	blood:
4	chr6:67961598..67964297-chr6:68597509..68599037,2	K562	blood:
5	chr6:67940673..67943387-chr6:67944462..67947455,2	MCF-7	breast:
6	chr6:67957680..67959538-chr6:67961788..67963871,2	K562	blood:
7	chr6:67936794..67940215-chr6:67944493..67947517,4	K562	blood:
8	chr6:67950191..67952805-chr6:67955013..67956540,2	K562	blood:
9	chr6:67937265..67939160-chr6:67944827..67947811,2	K562	blood:
10	chr6:67940673..67943387-chr6:67944462..67947455,2	MCF-7	breast:
11	chr6:67950191..67952805-chr6:67955013..67956540,2	K562	blood:

No data

Extended variants
information (count: 416 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:416 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111335337	chr6:67936229-67936230	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs386407418	chr6:67936236-67936237	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs72294770	chr6:67936241-67936242	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs116821951	chr6:67936243-67936244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs371656834	chr6:67936254-67936255	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs372049417	chr6:67936297-67936298	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs183918190	chr6:67936301-67936302	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs145125418	chr6:67936329-67936330	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs531252230	chr6:67936503-67936504	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs146843148	chr6:67936504-67936505	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs187688886	chr6:67936508-67936509	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs564731273	chr6:67936510-67936511	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs541318297	chr6:67936546-67936547	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs117100122	chr6:67936588-67936589	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs78582518	chr6:67936632-67936633	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs113667609	chr6:67936664-67936665	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs559645107	chr6:67936738-67936739	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs566527380	chr6:67936764-67936765	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs192515814	chr6:67936832-67936833	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs577519673	chr6:67936870-67936871	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs375984871	chr6:67936937-67936938	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs368502426	chr6:67936979-67936980	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs568234320	chr6:67936986-67936987	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs537377935	chr6:67936998-67936999	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs544997858	chr6:67937007-67937008	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs74322540	chr6:67937040-67937041	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs577149281	chr6:67937047-67937048	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs563203547	chr6:67937048-67937049	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs553056934	chr6:67937082-67937083	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs74396527	chr6:67937084-67937085	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs541427814	chr6:67937117-67937118	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs369489662	chr6:67937120-67937121	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs183948025	chr6:67937141-67937142	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs79361375	chr6:67937175-67937176	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs113861696	chr6:67937185-67937186	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs531057745	chr6:67937210-67937211	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs544926176	chr6:67937226-67937227	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs564332072	chr6:67937246-67937247	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs533397104	chr6:67937284-67937285	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs188238021	chr6:67937285-67937286	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs546796386	chr6:67937300-67937301	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs560176579	chr6:67937380-67937381	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs9345988	chr6:67937414-67937415	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs114375514	chr6:67937463-67937464	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs569265837	chr6:67937484-67937485	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs9454107	chr6:67937515-67937516	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs528703027	chr6:67937540-67937541	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs532907107	chr6:67937558-67937559	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs140534246	chr6:67937575-67937576	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs570761653	chr6:67937581-67937582	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:67936200-67937400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:67936400-67937000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:67936400-67938000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:67937000-67937400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:67937400-67937800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:67941000-67941400	Enhancers	Dnd41	blood
7	chr6:67949000-67949800	Enhancers	Aorta	Aorta
8	chr6:67954200-67954600	ZNF genes & repeats	Pancreas	Pancrea
9	chr6:67957000-67959000	Enhancers	Dnd41	blood
10	chr6:67958000-67958400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:67959000-67962000	Weak transcription	Dnd41	blood
12	chr6:67962000-67963800	Enhancers	Dnd41	blood
13	chr6:67962800-67963200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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