Variant report

Variant	nsv886187
Chromosome Location	chr6:76408950-76469115
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:672)
CpG islands
(count:427)
Chromatin interactive
region (count:70)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:672 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:76457201-76457496	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:76445315-76446019	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:76458528-76458682	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:76458622-76458651	K562	blood:	n/a	n/a
5	BACH1	chr6:76458387-76458719	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr6:76459213-76459671	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr6:76458435-76458631	K562	blood:	n/a	n/a
8	BATF	chr6:76453741-76453966	GM12878	blood:	n/a	n/a
9	BATF	chr6:76468871-76469148	GM12878	blood:	n/a	chr6:76468983-76468994
10	BCL11A	chr6:76453638-76454028	GM12878	blood:	n/a	n/a
11	BCL11A	chr6:76453680-76454055	GM12878	blood:	n/a	n/a
12	BHLHE40	chr6:76458636-76459158	GM12878	blood:	n/a	chr6:76459001-76459017
13	BHLHE40	chr6:76463949-76464065	HepG2	liver:	n/a	n/a
14	BHLHE40	chr6:76452022-76452184	HepG2	liver:	n/a	chr6:76452041-76452057
15	BHLHE40	chr6:76463942-76463968	GM12878	blood:	n/a	n/a
16	BHLHE40	chr6:76458636-76459067	K562	blood:	n/a	chr6:76459001-76459017
17	BRCA1	chr6:76458548-76459230	Hela-S3	cervix:	n/a	n/a
18	BRCA1	chr6:76458481-76458684	H1-hESC	embryonic stem cell:	n/a	n/a
19	CBX3	chr6:76463601-76464204	HCT-116	colon:	n/a	n/a
20	CCNT2	chr6:76458398-76459210	K562	blood:	n/a	n/a
21	CEBPB	chr6:76458442-76458796	HepG2	liver:	n/a	n/a
22	CEBPB	chr6:76445756-76445832	A549	lung:	n/a	n/a
23	CEBPB	chr6:76420528-76420815	HepG2	liver:	n/a	chr6:76420672-76420683
24	CEBPB	chr6:76458446-76458761	IMR90	lung:	n/a	n/a
25	CEBPB	chr6:76458311-76458775	H1-hESC	embryonic stem cell:	n/a	n/a
26	CEBPB	chr6:76465468-76465784	HepG2	liver:	n/a	chr6:76465644-76465657 chr6:76465645-76465656 chr6:76465646-76465655 chr6:76465644-76465657 chr6:76465644-76465657 chr6:76465644-76465655 chr6:76465646-76465655 chr6:76465644-76465655 chr6:76465646-76465655 chr6:76465646-76465655
27	CEBPB	chr6:76458453-76458653	K562	blood:	n/a	n/a
28	CEBPB	chr6:76445664-76445974	MCF-7	breast:	n/a	n/a
29	CEBPB	chr6:76463665-76464019	IMR90	lung:	n/a	n/a
30	CEBPB	chr6:76445228-76446111	HCT-116	colon:	n/a	chr6:76445651-76445662 chr6:76445652-76445664
31	CEBPB	chr6:76445676-76445920	HepG2	liver:	n/a	n/a
32	CEBPB	chr6:76435609-76435850	K562	blood:	n/a	n/a
33	CEBPB	chr6:76465474-76465776	A549	lung:	n/a	chr6:76465644-76465657 chr6:76465645-76465656 chr6:76465646-76465655 chr6:76465644-76465657 chr6:76465644-76465657 chr6:76465644-76465655 chr6:76465646-76465655 chr6:76465644-76465655 chr6:76465646-76465655 chr6:76465646-76465655
34	CEBPB	chr6:76445244-76446080	HCT-116	colon:	n/a	chr6:76445651-76445662 chr6:76445652-76445664
35	CEBPB	chr6:76465491-76465786	IMR90	lung:	n/a	chr6:76465644-76465657 chr6:76465645-76465656 chr6:76465646-76465655 chr6:76465644-76465657 chr6:76465644-76465657 chr6:76465644-76465655 chr6:76465646-76465655 chr6:76465644-76465655 chr6:76465646-76465655 chr6:76465646-76465655
36	CEBPB	chr6:76418102-76418437	HepG2	liver:	n/a	chr6:76418257-76418268
37	CEBPB	chr6:76462017-76462101	A549	lung:	n/a	chr6:76462021-76462034
38	CEBPB	chr6:76464790-76465019	HepG2	liver:	n/a	chr6:76464900-76464911
39	CEBPB	chr6:76465464-76465810	Hela-S3	cervix:	n/a	chr6:76465644-76465657 chr6:76465645-76465656 chr6:76465646-76465655 chr6:76465644-76465657 chr6:76465644-76465657 chr6:76465644-76465655 chr6:76465646-76465655 chr6:76465644-76465655 chr6:76465646-76465655 chr6:76465646-76465655
40	CEBPB	chr6:76458284-76459143	Hela-S3	cervix:	n/a	n/a
41	CEBPB	chr6:76420511-76420824	IMR90	lung:	n/a	chr6:76420672-76420683
42	CEBPD	chr6:76458657-76459159	HepG2	liver:	n/a	n/a
43	CHD1	chr6:76458044-76459218	GM12878	blood:	n/a	chr6:76458550-76458560
44	CHD1	chr6:76459425-76459893	H1-hESC	embryonic stem cell:	n/a	n/a
45	CHD1	chr6:76458458-76458771	H1-hESC	embryonic stem cell:	n/a	chr6:76458550-76458560
46	CHD1	chr6:76459472-76459797	GM12878	blood:	n/a	n/a
47	CHD1	chr6:76459058-76459131	H1-hESC	embryonic stem cell:	n/a	n/a
48	CHD2	chr6:76458348-76459225	GM12878	blood:	n/a	chr6:76458550-76458560
49	CHD2	chr6:76458450-76459267	H1-hESC	embryonic stem cell:	n/a	chr6:76458550-76458560
50	CHD2	chr6:76458470-76458675	K562	blood:	n/a	chr6:76458550-76458560

(count:427 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:76459511-76459561	HCT-116	colon:	n/a
2	chr6:76425457-76425507	SK-N-SH_RA	brain:	n/a
3	chr6:76459511-76459561	Hela-S3	cervix:	n/a
4	chr6:76458005-76458055	Caco-2	colon:	n/a
5	chr6:76459077-76459127	Hela-S3	cervix:	n/a
6	chr6:76461321-76461371	AoSMC	blood vessel:	n/a
7	chr6:76461321-76461371	NH-A	brain:	n/a
8	chr6:76456187-76456237	HNPCEpiC	eye:	n/a
9	chr6:76458633-76458683	Hela-S3	cervix:	n/a
10	chr6:76459511-76459561	HRE	kidney:	n/a
11	chr6:76461321-76461371	GM19239	blood:	n/a
12	chr6:76425457-76425507	HIPEpiC	eye:	n/a
13	chr6:76459511-76459561	AG10803	skin:	n/a
14	chr6:76459511-76459561	HCM	heart:	n/a
15	chr6:76458633-76458683	BJ	skin:	n/a
16	chr6:76456187-76456237	SAEC	small airway:	n/a
17	chr6:76458005-76458055	HRCEpiC	kidney:	n/a
18	chr6:76461321-76461371	Jurkat	blood:	n/a
19	chr6:76459077-76459127	GM12891	blood:	n/a
20	chr6:76458005-76458055	HIPEpiC	eye:	n/a
21	chr6:76461321-76461371	SAEC	small airway:	n/a
22	chr6:76459511-76459561	HRCEpiC	kidney:	n/a
23	chr6:76459511-76459561	IMR90	lung:	fetal
24	chr6:76459077-76459127	GM12892	blood:	n/a
25	chr6:76458633-76458683	HepG2	liver:	n/a
26	chr6:76458005-76458055	Hela-S3	cervix:	n/a
27	chr6:76459077-76459127	IMR90	lung:	fetal
28	chr6:76456187-76456237	PrEC	prostate:	n/a
29	chr6:76458005-76458055	NHBE	bronchial:	n/a
30	chr6:76461321-76461371	HCT-116	colon:	n/a
31	chr6:76461321-76461371	Hepatocyte	liver:	n/a
32	chr6:76461321-76461371	SK-N-SH	brain:	n/a
33	chr6:76425457-76425507	MCF10A-Er-Src	breast:	n/a
34	chr6:76458633-76458683	HL-60	blood:	n/a
35	chr6:76425457-76425507	IMR90	lung:	fetal
36	chr6:76425457-76425507	A549	lung:	n/a
37	chr6:76458633-76458683	PANC-1	pancreas:	n/a
38	chr6:76458005-76458055	AG09309	skin:	n/a
39	chr6:76456187-76456237	HCM	heart:	n/a
40	chr6:76425457-76425507	ovcar-3	ovarian:	n/a
41	chr6:76458633-76458683	RPTEC	kidney:	n/a
42	chr6:76459511-76459561	HMEC	breast:	n/a
43	chr6:76459511-76459561	H1-hESC	embryonic stem cell:	embryo
44	chr6:76461321-76461371	AG04450	lung:	fetal
45	chr6:76458633-76458683	SKMC	muscle:	n/a
46	chr6:76459077-76459127	LNCaP	prostate:	n/a
47	chr6:76459077-76459127	AG04449	skin:	fetal
48	chr6:76461321-76461371	HRE	kidney:	n/a
49	chr6:76425457-76425507	K562	blood:	n/a
50	chr6:76425457-76425507	AG09319	gingival:	n/a

(count:70 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:76457614..76459414-chr6:76469003..76470756,2	K562	blood:
2	chr6:76461468..76463754-chr6:76469518..76472253,2	MCF-7	breast:
3	chr6:76416294..76419277-chr6:76420477..76423022,2	K562	blood:
4	chr6:76463962..76466709-chr6:76471388..76473486,2	MCF-7	breast:
5	chr6:76423467..76426296-chr6:76461021..76463732,3	MCF-7	breast:
6	chr6:76310925..76313590-chr6:76457201..76459634,2	K562	blood:
7	chr6:76406647..76409621-chr6:76410785..76413589,2	K562	blood:
8	chr6:76443216..76445538-chr6:76460929..76463884,2	K562	blood:
9	chr6:76465841..76467549-chr6:76494669..76496179,2	MCF-7	breast:
10	chr6:76415966..76418474-chr6:76457642..76460557,4	MCF-7	breast:
11	chr6:76423793..76426485-chr6:76434093..76435596,2	K562	blood:
12	chr6:76316195..76318634-chr6:76459170..76461001,2	K562	blood:
13	chr6:76467657..76469847-chr6:76559756..76561654,2	MCF-7	breast:
14	chr6:76458966..76460939-chr6:76574214..76577179,2	MCF-7	breast:
15	chr6:76465017..76467292-chr6:76472497..76474825,2	K562	blood:
16	chr3:141205080..141206779-chr6:76458156..76460847,2	MCF-7	breast:
17	chr6:76413657..76415200-chr6:76420816..76423209,2	MCF-7	breast:
18	chr6:76461153..76463947-chr6:76466842..76469998,3	MCF-7	breast:
19	chr6:76426476..76430048-chr6:76457436..76461171,5	MCF-7	breast:
20	chr6:76458851..76461588-chr6:76463826..76466127,2	K562	blood:
21	chr6:76431586..76433985-chr6:76438066..76440225,2	MCF-7	breast:
22	chr6:76408144..76410485-chr6:76410972..76412755,2	MCF-7	breast:
23	chr6:76424657..76427289-chr6:76428050..76430901,3	MCF-7	breast:
24	chr6:76320020..76322105-chr6:76423785..76425773,2	K562	blood:
25	chr6:76423793..76426485-chr6:76434093..76435596,2	K562	blood:
26	chr6:76458766..76460644-chr6:76463670..76465363,2	MCF-7	breast:
27	chr11:93474252..93474772-chr6:76458412..76459090,2	Hela-S3	cervix:
28	chr6:76426836..76429906-chr6:76458673..76460595,3	MCF-7	breast:
29	chr6:76452171..76456681-chr6:76457096..76463079,8	MCF-7	breast:
30	chr6:76459866..76461619-chr6:76483545..76486040,2	K562	blood:
31	chr6:76456068..76458008-chr6:76564755..76567247,2	MCF-7	breast:
32	chr6:76443216..76445538-chr6:76460929..76463884,2	K562	blood:
33	chr6:76461153..76463947-chr6:76466842..76469998,3	MCF-7	breast:
34	chr6:76408144..76410485-chr6:76410972..76412755,2	MCF-7	breast:
35	chr6:76461303..76463860-chr6:76468925..76471220,2	K562	blood:
36	chr6:76457017..76459821-chr6:76526945..76528874,2	MCF-7	breast:
37	chr6:76413657..76415200-chr6:76420816..76423209,2	MCF-7	breast:
38	chr6:76445351..76447592-chr6:76454801..76459037,4	MCF-7	breast:
39	chr6:76424414..76426953-chr6:76430333..76433018,2	MCF-7	breast:
40	chr6:41039866..41042611-chr6:76456761..76459603,2	MCF-7	breast:
41	chr2:233562031..233562988-chr6:76458771..76459462,2	Hela-S3	cervix:
42	chr6:76460418..76462531-chr6:76558690..76560910,2	MCF-7	breast:
43	chr6:76456505..76458923-chr6:76460845..76462733,2	K562	blood:
44	chr6:76457754..76460582-chr6:76467683..76471676,6	MCF-7	breast:
45	chr6:76402073..76403999-chr6:76420565..76422699,2	MCF-7	breast:
46	chr6:76402029..76404149-chr6:76408590..76410105,2	MCF-7	breast:
47	chr6:76423467..76426296-chr6:76461021..76463732,3	MCF-7	breast:
48	chr6:76424414..76426953-chr6:76430333..76433018,2	MCF-7	breast:
49	chr6:76467679..76470814-chr6:76472807..76475124,3	K562	blood:
50	chr6:76457060..76461197-chr6:76473704..76478813,6	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SENP6-5	chr6:76434955-76435356	NONHSAT113632
2	lnc-SENP6-4	chr6:76433669-76434665	NONHSAT113631

No data

Variant related genes	Relation type
MYO6	TF binding region
MYO6	CpG island
ENSG00000112697	chromatin interactions
ENSG00000239132	chromatin interactions
ENSG00000204120	chromatin interactions
ENSG00000143971	chromatin interactions
ENSG00000112701	chromatin interactions
ENSG00000223169	chromatin interactions
ENSG00000217488	chromatin interactions
ENSG00000182919	chromatin interactions
ENSG00000001167	chromatin interactions
ENSG00000155903	chromatin interactions
ENSG00000124596	chromatin interactions
ENSG00000166012	chromatin interactions
ENSG00000196586	chromatin interactions
ENSG00000252156	chromatin interactions

Extended variants
information (count: 2113 )
Associated
traits (count: 98 )

Variant overlapped rSNPs/rCNVs (count:2113 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9343314	chr6:76408950-76408951	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs528729623	chr6:76408975-76408976	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs16886827	chr6:76408985-76408986	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs571490259	chr6:76409001-76409002	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs532105828	chr6:76409053-76409054	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs373237452	chr6:76409063-76409064	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199925258	chr6:76409069-76409070	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs367917057	chr6:76409070-76409071	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs71544060	chr6:76409071-76409072	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs550260188	chr6:76409111-76409112	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs568877457	chr6:76409143-76409144	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs535881580	chr6:76409147-76409148	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs554503295	chr6:76409169-76409170	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs566675506	chr6:76409222-76409223	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs140635725	chr6:76409246-76409247	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs567714453	chr6:76409310-76409311	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs558822582	chr6:76409314-76409315	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs577107960	chr6:76409315-76409316	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs545558518	chr6:76409361-76409362	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs114071937	chr6:76409376-76409377	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs575644509	chr6:76409383-76409384	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs145683169	chr6:76409438-76409439	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs535131979	chr6:76409456-76409457	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs138244913	chr6:76409551-76409552	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs528792841	chr6:76409560-76409561	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs540505492	chr6:76409601-76409602	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs565187117	chr6:76409667-76409668	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs532560936	chr6:76409675-76409676	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs374396189	chr6:76409681-76409682	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs187677026	chr6:76409694-76409695	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs568863448	chr6:76409715-76409716	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs529768130	chr6:76409772-76409773	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs74360826	chr6:76409798-76409799	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs566461035	chr6:76409815-76409816	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs547653998	chr6:76409839-76409840	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs35075947	chr6:76409887-76409888	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs397707194	chr6:76409888-76409889	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs192776434	chr6:76409919-76409920	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs552490050	chr6:76409947-76409948	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs539588457	chr6:76409966-76409967	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs184696466	chr6:76409967-76409968	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs570718387	chr6:76410113-76410114	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs538041138	chr6:76410196-76410197	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs35638401	chr6:76410229-76410230	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs9343315	chr6:76410241-76410242	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs150275580	chr6:76410262-76410263	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs368720464	chr6:76410265-76410266	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs371470340	chr6:76410272-76410273	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs536733195	chr6:76410276-76410277	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs554691970	chr6:76410288-76410289	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:98)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1411 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76382000-76422800	Weak transcription	Stomach Mucosa	stomach
2	chr6:76391400-76410400	Weak transcription	Brain Substantia Nigra	brain
3	chr6:76391400-76417200	Weak transcription	Gastric	stomach
4	chr6:76391400-76421200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:76391400-76426600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:76391600-76419200	Weak transcription	Right Ventricle	heart
7	chr6:76391600-76427200	Weak transcription	Small Intestine	intestine
8	chr6:76392000-76410000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:76392000-76410400	Weak transcription	Brain Angular Gyrus	brain
10	chr6:76392000-76412200	Weak transcription	HepG2	liver
11	chr6:76392000-76412400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:76392000-76421400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:76392000-76423400	Weak transcription	NHEK	skin
14	chr6:76392000-76423800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:76392200-76420400	Weak transcription	Fetal Heart	heart
16	chr6:76392200-76421000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:76392200-76426800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:76393000-76409800	Weak transcription	Psoas Muscle	Psoas
19	chr6:76395200-76420200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:76396800-76414600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:76396800-76414600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr6:76396800-76414800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:76397000-76411400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:76397000-76413400	Strong transcription	Fetal Thymus	thymus
25	chr6:76397200-76415800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:76397200-76418000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:76397400-76413600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:76397400-76414000	Strong transcription	Dnd41	blood
29	chr6:76397400-76415000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:76397400-76430800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:76398000-76421000	Weak transcription	K562	blood
32	chr6:76398000-76428200	Weak transcription	Colonic Mucosa	Colon
33	chr6:76398200-76417200	Weak transcription	Spleen	Spleen
34	chr6:76398400-76410200	Weak transcription	Esophagus	oesophagus
35	chr6:76398400-76411400	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:76398400-76425400	Weak transcription	Pancreas	Pancrea
37	chr6:76399800-76409200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:76399800-76426200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:76400000-76409600	Weak transcription	Lung	lung
40	chr6:76400000-76410000	Weak transcription	HSMMtube	muscle
41	chr6:76400000-76412800	Weak transcription	Aorta	Aorta
42	chr6:76400000-76413800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr6:76401600-76413600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:76401600-76426400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:76402000-76414200	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr6:76402000-76414200	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr6:76402200-76411400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:76402200-76411600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:76402200-76414200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:76402200-76415000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links