Variant report

Variant	nsv886222
Chromosome Location	chr6:77577055-77734250
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:77604565..77606843-chr6:77607602..77609316,2	MCF-7	breast:
2	chr6:77586174..77588444-chr6:77591839..77593898,2	MCF-7	breast:
3	chr6:77630606..77632984-chr6:77637427..77639871,2	K562	blood:
4	chr6:77582858..77584967-chr6:77718871..77720639,2	MCF-7	breast:
5	chr6:77584071..77587000-chr6:77595332..77597359,2	MCF-7	breast:
6	chr6:77584071..77587000-chr6:77595332..77597359,2	MCF-7	breast:
7	chr6:77586174..77588444-chr6:77591839..77593898,2	MCF-7	breast:
8	chr6:77570038..77572103-chr6:77580616..77583020,2	MCF-7	breast:
9	chr6:76985498..76986021-chr6:77586428..77587326,2	MCF-7	breast:
10	chr6:77604565..77606843-chr6:77607602..77609316,2	MCF-7	breast:
11	chr6:77407151..77408023-chr6:77621937..77622579,2	MCF-7	breast:
12	chr6:77582858..77584967-chr6:77718871..77720639,2	MCF-7	breast:
13	chr6:77630606..77632984-chr6:77637427..77639871,2	K562	blood:
14	chr6:77599097..77600704-chr6:77603825..77605773,2	MCF-7	breast:
15	chr6:77392645..77395103-chr6:77585280..77587587,2	MCF-7	breast:
16	chr6:77406988..77407870-chr6:77586545..77587424,2	MCF-7	breast:
17	chr6:77571315..77572854-chr6:77575664..77578311,2	MCF-7	breast:
18	chr6:77599097..77600704-chr6:77603825..77605773,2	MCF-7	breast:
19	chr6:77575911..77578769-chr6:77582342..77584830,2	MCF-7	breast:
20	chr6:77575911..77578769-chr6:77582342..77584830,2	MCF-7	breast:
21	chr6:77576372..77578055-chr6:77585429..77587014,2	MCF-7	breast:
22	chr6:77576372..77578055-chr6:77585429..77587014,2	MCF-7	breast:

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-15	chr6:77665983-77666282	NONHSAT113650
2	lnc-MYO6-15	chr6:77658958-77659487	NONHSAT113650
3	lnc-MYO6-15	chr6:77661074-77663494	FPKM1_group_27832_transcript_1
4	lnc-MYO6-15	chr6:77628029-77628655	NONHSAT113650
5	lnc-MYO6-10	chr6:77575439-77584888	NONHSAT113649
6	lnc-MYO6-3	chr6:77698014-77698599	XLOC_005355
7	lnc-MYO6-15	chr6:77666315-77666328	NONHSAT113650
8	lnc-MYO6-3	chr6:77599901-77599940	XLOC_005355
9	lnc-MYO6-15	chr6:77661074-77663494	NONHSAT113651
10	lnc-MYO6-15	chr6:77663786-77667065	NONHSAT113651
11	lnc-MYO6-15	chr6:77663786-77664113	FPKM1_group_27832_transcript_1
12	lnc-MYO6-15	chr6:77731337-77731835	NONHSAT113650
13	lnc-MYO6-15	chr6:77682889-77683422	NONHSAT113650
14	lnc-MYO6-15	chr6:77638732-77638769	NONHSAT113650

No data

Variant related genes	Relation type
EIF4G3	miRNA target sites

Extended variants
information (count: 2119 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:2119 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9447838	chr6:77577055-77577056	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs543757139	chr6:77577111-77577112	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs9343520	chr6:77577131-77577132	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs575820522	chr6:77577152-77577153	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs34606836	chr6:77577162-77577163	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs561308031	chr6:77577170-77577171	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
7	rs575358607	chr6:77577178-77577179	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
8	rs528739003	chr6:77577214-77577215	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
9	rs193074177	chr6:77577261-77577262	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
10	rs371444880	chr6:77577303-77577304	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
11	rs565334456	chr6:77577310-77577311	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
12	rs9341610	chr6:77577318-77577319	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs550663951	chr6:77577330-77577331	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs565016339	chr6:77577334-77577335	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
15	rs150932501	chr6:77577335-77577336	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs185857112	chr6:77577356-77577357	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs373858783	chr6:77577368-77577369	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs199868830	chr6:77577369-77577370	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs374764333	chr6:77577370-77577371	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs141583384	chr6:77577388-77577389	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs114900075	chr6:77577436-77577437	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs561752812	chr6:77577440-77577441	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs558332346	chr6:77577442-77577443	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs530508109	chr6:77577501-77577502	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs190388824	chr6:77577564-77577565	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs12201004	chr6:77577651-77577652	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs531030911	chr6:77577656-77577657	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs180705681	chr6:77577667-77577668	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs9361162	chr6:77577707-77577708	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs139448911	chr6:77577747-77577748	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs555351274	chr6:77577753-77577754	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs185129011	chr6:77577807-77577808	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs13216597	chr6:77577825-77577826	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs565493471	chr6:77577900-77577901	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs115999072	chr6:77578049-77578050	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs56240075	chr6:77578100-77578101	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs544717918	chr6:77578102-77578103	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs562721768	chr6:77578132-77578133	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs142645378	chr6:77578140-77578141	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs572724306	chr6:77578148-77578149	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs75097138	chr6:77578154-77578155	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs35321584	chr6:77578156-77578157	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs200354679	chr6:77578157-77578158	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs566381996	chr6:77578168-77578169	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs116316113	chr6:77578205-77578206	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs531030873	chr6:77578257-77578258	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs551926933	chr6:77578260-77578261	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs73758014	chr6:77578273-77578274	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs72893153	chr6:77578334-77578335	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs566398149	chr6:77578385-77578386	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77571600-77579000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:77576600-77577200	Enhancers	Aorta	Aorta
3	chr6:77576600-77577400	Enhancers	Osteobl	bone
4	chr6:77576800-77577200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr6:77576800-77577200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:77576800-77577400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:77578400-77585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:77584000-77585400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:77585000-77585400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr6:77585000-77585400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:77585000-77585400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
12	chr6:77585000-77585400	Enhancers	Pancreas	Pancrea
13	chr6:77585000-77585600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr6:77585000-77585600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:77585200-77585400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
16	chr6:77585200-77585600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:77585200-77585600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
18	chr6:77585200-77585600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr6:77585200-77585600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr6:77585200-77585600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
21	chr6:77585400-77586400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:77585400-77586600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:77585400-77586600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:77585400-77590800	Weak transcription	Pancreas	Pancrea
25	chr6:77585600-77586200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:77585600-77586200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:77585600-77586200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:77585600-77586200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:77585600-77586400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:77585600-77586400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:77586000-77586400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:77586200-77586800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:77586200-77586800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:77586200-77587000	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr6:77586200-77587000	Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr6:77586200-77587000	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr6:77586200-77587000	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr6:77586400-77586800	Active TSS	H1 Cell Line	embryonic stem cell
39	chr6:77586400-77586800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:77586600-77587000	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr6:77586600-77587000	Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr6:77586600-77587200	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr6:77586600-77587200	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr6:77587000-77587200	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr6:77587800-77588200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:77590200-77591200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:77590800-77591400	Enhancers	Pancreas	Pancrea
48	chr6:77591200-77595200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:77591400-77596600	Weak transcription	Pancreas	Pancrea
50	chr6:77593400-77594200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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