Variant report

Variant	nsv886223
Chromosome Location	chr6:77686247-77950949
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:10)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:77789816..77792287-chr6:77876567..77879550,2	K562	blood:
2	chr6:58777416..58779792-chr6:77801547..77804072,2	MCF-7	breast:
3	chr6:77756209..77758349-chr6:77773587..77775917,2	MCF-7	breast:
4	chr6:77882123..77883969-chr6:77885835..77887575,2	MCF-7	breast:
5	chr6:77756209..77758349-chr6:77773587..77775917,2	MCF-7	breast:
6	chr6:77789816..77792287-chr6:77876567..77879550,2	K562	blood:
7	chr6:77883269..77883819-chr6:78167410..78168146,2	MCF-7	breast:
8	chr3:129659620..129661352-chr6:77785922..77787442,2	MCF-7	breast:
9	chr6:77882123..77883969-chr6:77885835..77887575,2	MCF-7	breast:
10	chr6:77582858..77584967-chr6:77718871..77720639,2	MCF-7	breast:

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-3	chr6:77698014-77698599	XLOC_005355
2	lnc-MYO6-11	chr6:77754733-77754969	l_3207_chr6:77541429-77755145_testes
3	lnc-MYO6-14	chr6:77860253-77860997	NONHSAT113655
4	lnc-HTR1B-2	chr6:77860918-77860954	XLOC_005768
5	lnc-MYO6-15	chr6:77731337-77731835	NONHSAT113650
6	lnc-HTR1B-2	chr6:77822661-77823096	XLOC_005768
7	lnc-MYO6-14	chr6:77861536-77861691	NONHSAT113655
8	lnc-MYO6-12	chr6:77798170-77801007	NONHSAT113653
9	lnc-MYO6-11	chr6:77755026-77755145	l_3207_chr6:77541429-77755145_testes
10	lnc-MYO6-15	chr6:77849239-77849469	NONHSAT113650

No data

Variant related genes	Relation type
CHMP2B	miRNA target sites
EIF4G3	miRNA target sites
PRKD3	miRNA target sites

Extended variants
information (count: 6288 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:6288 , 50 per page) page: 1 2 3 4 5 6 7 ... 126

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs80260793	chr6:77691104-77691105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs73758101	chr6:77691135-77691136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs542948851	chr6:77691141-77691142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs190145215	chr6:77691145-77691146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs183088861	chr6:77691201-77691202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs34191250	chr6:77691277-77691278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs187385472	chr6:77691297-77691298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs574783140	chr6:77691469-77691470	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs535021286	chr6:77691492-77691493	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs323273	chr6:77691502-77691503	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs541367408	chr6:77691560-77691561	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs375113715	chr6:77691593-77691594	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs578064948	chr6:77691600-77691601	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs545370546	chr6:77691624-77691625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs563415070	chr6:77691632-77691633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs193257381	chr6:77691700-77691701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs542425400	chr6:77691731-77691732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs561061580	chr6:77691750-77691751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs531368376	chr6:77691757-77691758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs528132997	chr6:77691770-77691771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs184089033	chr6:77691841-77691842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs564585360	chr6:77691851-77691852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs572131187	chr6:77691964-77691965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs142599399	chr6:77692015-77692016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs552084229	chr6:77692048-77692049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs7747304	chr6:77692057-77692058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs537671508	chr6:77692058-77692059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs549265776	chr6:77692088-77692089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs375615653	chr6:77692093-77692094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs167743	chr6:77692111-77692112	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs114557253	chr6:77692115-77692116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs564082587	chr6:77692162-77692163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs192452047	chr6:77692243-77692244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs578091084	chr6:77692303-77692304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs531287620	chr6:77692305-77692306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs146004363	chr6:77692347-77692348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs557239648	chr6:77692409-77692410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs571027190	chr6:77692414-77692415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs148657209	chr6:77692437-77692438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs538259749	chr6:77692445-77692446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs554382498	chr6:77692506-77692507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs72897082	chr6:77692511-77692512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs183549790	chr6:77692520-77692521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs564618900	chr6:77692558-77692559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs546792288	chr6:77692567-77692568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs531992902	chr6:77692574-77692575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs141469985	chr6:77692600-77692601	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs188630246	chr6:77692601-77692602	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs549644366	chr6:77692615-77692616	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs566768491	chr6:77692696-77692697	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:315 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77691000-77692600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:77691400-77691600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:77692600-77692800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr6:77692800-77693600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:77698200-77699000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:77699000-77703400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:77702400-77702600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:77711400-77711800	Enhancers	Fetal Heart	heart
9	chr6:77721000-77722200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:77724600-77725400	Enhancers	Brain Germinal Matrix	brain
11	chr6:77725000-77725200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:77725000-77725200	Enhancers	Liver	Liver
13	chr6:77725000-77725400	Enhancers	HSMM	muscle
14	chr6:77725200-77726800	Weak transcription	Liver	Liver
15	chr6:77725200-77736000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:77726800-77728200	Enhancers	Liver	Liver
17	chr6:77728200-77731000	Weak transcription	Liver	Liver
18	chr6:77731000-77731400	Enhancers	Liver	Liver
19	chr6:77731400-77731800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:77735600-77736000	Enhancers	Osteobl	bone
21	chr6:77736000-77736600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:77736000-77737000	Enhancers	Hela-S3	cervix
23	chr6:77736000-77740800	Weak transcription	Osteobl	bone
24	chr6:77736200-77736600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:77736600-77743400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:77740400-77740800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:77740400-77741200	Enhancers	HSMM	muscle
28	chr6:77740600-77741200	Active TSS	Liver	Liver
29	chr6:77740800-77741200	Enhancers	HSMMtube	muscle
30	chr6:77740800-77741200	Enhancers	Osteobl	bone
31	chr6:77740800-77741400	Enhancers	HMEC	breast
32	chr6:77740800-77743200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:77741000-77741200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:77741200-77742600	Weak transcription	HSMMtube	muscle
35	chr6:77741200-77743200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:77741200-77743400	Weak transcription	HSMM	muscle
37	chr6:77741200-77743600	Weak transcription	Osteobl	bone
38	chr6:77741400-77743000	Weak transcription	HMEC	breast
39	chr6:77742600-77742800	Enhancers	HSMMtube	muscle
40	chr6:77742600-77746000	Weak transcription	Pancreas	Pancrea
41	chr6:77742800-77743200	Weak transcription	HSMMtube	muscle
42	chr6:77743000-77743400	Enhancers	NH-A	brain
43	chr6:77743000-77744200	Enhancers	HMEC	breast
44	chr6:77743200-77743600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:77743200-77743600	Enhancers	HSMMtube	muscle
46	chr6:77743200-77744000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:77743400-77743600	Active TSS	HSMM	muscle
48	chr6:77743400-77743800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr6:77743400-77744000	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr6:77743400-77744000	Enhancers	Muscle Satellite Cultured Cells	--

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