Variant report

Variant	nsv886322
Chromosome Location	chr6:81745936-81812816
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81314911..81315522-chr6:81785483..81786072,2	MCF-7	breast:
2	chr6:81731744..81734648-chr6:81746656..81748984,2	K562	blood:

Extended variants
information (count: 1237 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:1237 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559309195	chr6:81759019-81759020	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs112636552	chr6:81759049-81759050	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs533633918	chr6:81759057-81759058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs553397102	chr6:81759070-81759071	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs528027472	chr6:81759092-81759093	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs199501718	chr6:81759199-81759200	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs386703158	chr6:81759207-81759208	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs550419812	chr6:81759208-81759209	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs572497121	chr6:81759211-81759212	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs374329583	chr6:81759212-81759213	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs77315877	chr6:81759215-81759216	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs551499159	chr6:81759268-81759269	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs564818097	chr6:81759291-81759292	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs184899770	chr6:81759304-81759305	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs141571177	chr6:81759339-81759340	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs6911697	chr6:81759344-81759345	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs62425820	chr6:81759379-81759380	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs570217160	chr6:81759382-81759383	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs546540326	chr6:81759404-81759405	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs566070211	chr6:81759420-81759421	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs534705949	chr6:81759424-81759425	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs55970143	chr6:81759458-81759459	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs571635662	chr6:81759462-81759463	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs545443175	chr6:81759495-81759496	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs557148403	chr6:81759507-81759508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs573854823	chr6:81759594-81759595	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs368191149	chr6:81759598-81759599	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs542915653	chr6:81759599-81759600	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs553385776	chr6:81759615-81759616	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs189012889	chr6:81759626-81759627	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs531279329	chr6:81759634-81759635	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs535206480	chr6:81759645-81759646	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs181058221	chr6:81759669-81759670	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs544809206	chr6:81759707-81759708	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs76191952	chr6:81759715-81759716	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs544292771	chr6:81759735-81759736	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs114155527	chr6:81759771-81759772	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs139212709	chr6:81759831-81759832	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs529869856	chr6:81759839-81759840	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs374421045	chr6:81759873-81759874	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs566645453	chr6:81759953-81759954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs528520768	chr6:81759958-81759959	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs551464814	chr6:81759986-81759987	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs78349549	chr6:81760046-81760047	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs78650321	chr6:81760050-81760051	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs7743779	chr6:81760054-81760055	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs374058702	chr6:81760068-81760069	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs567566606	chr6:81760082-81760083	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs145365785	chr6:81760121-81760122	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs553661697	chr6:81760132-81760133	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Tetralogy of Fallot	22912587	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81759000-81759600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr6:81759000-81760400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:81759200-81759800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:81763600-81763800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:81764000-81764600	Active TSS	NHDF-Ad	bronchial
6	chr6:81770000-81770400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:81770000-81770800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:81770800-81774000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:81773400-81774000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:81773400-81774000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:81773800-81774000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:81773800-81774000	ZNF genes & repeats	Aorta	Aorta
13	chr6:81773800-81774600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:81774000-81774400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:81774000-81781000	Weak transcription	Aorta	Aorta
16	chr6:81774400-81778000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:81778000-81779200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:81778200-81779200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:81780800-81781600	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr6:81781000-81781200	Enhancers	Aorta	Aorta
21	chr6:81785400-81785800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:81785400-81786200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:81785600-81785800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr6:81785600-81785800	Enhancers	Brain Cingulate Gyrus	brain
25	chr6:81785600-81786000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:81785600-81786200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:81785600-81786200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:81785600-81786200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:81785600-81786200	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr6:81785600-81786200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr6:81785600-81786200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:81786200-81800200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:81794600-81795000	Enhancers	Fetal Heart	heart
34	chr6:81794600-81795200	Enhancers	Fetal Lung	lung
35	chr6:81795200-81796800	Weak transcription	Fetal Lung	lung
36	chr6:81796200-81797000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:81796200-81797600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:81796400-81797600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr6:81796800-81797400	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr6:81796800-81797400	Enhancers	Fetal Lung	lung
41	chr6:81796800-81797600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr6:81797000-81797200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:81797000-81797400	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr6:81797000-81797800	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr6:81797200-81797400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:81797200-81797600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr6:81797200-81797600	Enhancers	H9 Cell Line	embryonic stem cell
48	chr6:81797200-81797600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr6:81797200-81797600	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr6:81797200-81797600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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