Variant report

Variant	nsv886326
Chromosome Location	chr6:81786684-81841444
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 840 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:840 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9449234	chr6:81786684-81786685	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs558558030	chr6:81786752-81786753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs146446698	chr6:81786777-81786778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs543432316	chr6:81786813-81786814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs141367016	chr6:81786821-81786822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs573803998	chr6:81786858-81786859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs111462944	chr6:81786912-81786913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs570875044	chr6:81786922-81786923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs145103872	chr6:81786936-81786937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs146891666	chr6:81787020-81787021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs528653703	chr6:81787025-81787026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs552082538	chr6:81787035-81787036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs565590969	chr6:81787094-81787095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs183568134	chr6:81787117-81787118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs550606906	chr6:81787151-81787152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs188710651	chr6:81787165-81787166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs9361724	chr6:81787190-81787191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs74376484	chr6:81787223-81787224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs566694134	chr6:81787273-81787274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs553263153	chr6:81787278-81787279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs192601031	chr6:81787307-81787308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs182685489	chr6:81787308-81787309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs561027256	chr6:81787335-81787336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs369206732	chr6:81787344-81787345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs113966878	chr6:81787378-81787379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs34844727	chr6:81787388-81787389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs538807135	chr6:81787411-81787412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs558301739	chr6:81787457-81787458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs568814798	chr6:81787484-81787485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs186629847	chr6:81787508-81787509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs556974867	chr6:81787524-81787525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs77066454	chr6:81787525-81787526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs373517513	chr6:81787555-81787556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs191581404	chr6:81787596-81787597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs553778146	chr6:81787712-81787713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs573252292	chr6:81787742-81787743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs545278227	chr6:81787786-81787787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs148994286	chr6:81787789-81787790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs143659767	chr6:81787790-81787791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs148077372	chr6:81787798-81787799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs141829776	chr6:81787817-81787818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs116156850	chr6:81787831-81787832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs546541142	chr6:81787847-81787848	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs200687274	chr6:81787864-81787865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs565529916	chr6:81787871-81787872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs184900614	chr6:81787913-81787914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs557571977	chr6:81787915-81787916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs310427	chr6:81787926-81787927	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs551961964	chr6:81787940-81787941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs12215165	chr6:81787958-81787959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Tetralogy of Fallot	22912587	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81786200-81800200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:81794600-81795000	Enhancers	Fetal Heart	heart
3	chr6:81794600-81795200	Enhancers	Fetal Lung	lung
4	chr6:81795200-81796800	Weak transcription	Fetal Lung	lung
5	chr6:81796200-81797000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:81796200-81797600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:81796400-81797600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:81796800-81797400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:81796800-81797400	Enhancers	Fetal Lung	lung
10	chr6:81796800-81797600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:81797000-81797200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:81797000-81797400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:81797000-81797800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:81797200-81797400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:81797200-81797600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr6:81797200-81797600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr6:81797200-81797600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:81797200-81797600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr6:81797200-81797600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:81797200-81797600	Enhancers	Adipose Nuclei	Adipose
21	chr6:81797200-81797600	Enhancers	Fetal Stomach	stomach
22	chr6:81797200-81797600	Enhancers	Psoas Muscle	Psoas
23	chr6:81797400-81797600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:81797400-81802800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:81797600-81802600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:81797600-81803000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:81797600-81803000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:81797800-81798200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:81797800-81802800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:81802600-81804200	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr6:81802800-81803400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr6:81802800-81803600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr6:81803000-81803600	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr6:81803000-81803800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr6:81803000-81803800	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr6:81813200-81813400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:81813400-81814200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:81814200-81814600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:81835800-81836000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:81835800-81836000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:81835800-81836400	Enhancers	NHDF-Ad	bronchial
42	chr6:81836000-81836400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:81836000-81836400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:81839600-81841400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:81840200-81840800	Enhancers	Primary hematopoietic stem cells	blood
46	chr6:81840200-81841400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:81840400-81840800	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr6:81840800-81841200	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links