Variant report

Variant	nsv886350
Chromosome Location	chr6:93050990-93088300
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:93080870..93083476-chr6:93091512..93093788,2	MCF-7	breast:
2	chr6:93073777..93076004-chr6:93079318..93081094,2	K562	blood:
3	chr6:93040169..93042395-chr6:93071437..93074372,2	K562	blood:
4	chr6:93073777..93076004-chr6:93079318..93081094,2	K562	blood:

Extended variants
information (count: 1161 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:1161 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2067050	chr6:93050990-93050991	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs538755663	chr6:93051001-93051002	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs367862722	chr6:93051002-93051003	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs369212814	chr6:93051004-93051005	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs183738686	chr6:93051025-93051026	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs572153181	chr6:93051026-93051027	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs535286032	chr6:93051029-93051030	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs555136035	chr6:93051037-93051038	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs575041121	chr6:93051070-93051071	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs544048110	chr6:93051109-93051110	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs188515992	chr6:93051118-93051119	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs191762172	chr6:93051122-93051123	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs182710109	chr6:93051140-93051141	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs2818128	chr6:93051152-93051153	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs559449232	chr6:93051186-93051187	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs186982609	chr6:93051205-93051206	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs532043476	chr6:93051228-93051229	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs547226992	chr6:93051247-93051248	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs561093505	chr6:93051326-93051327	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs529947212	chr6:93051335-93051336	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs541617641	chr6:93051363-93051364	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs568218824	chr6:93051413-93051414	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs569836184	chr6:93051441-93051442	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs9451978	chr6:93051466-93051467	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs552201429	chr6:93051470-93051471	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs554078690	chr6:93051474-93051475	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs565994058	chr6:93051481-93051482	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs191324435	chr6:93051492-93051493	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs111447982	chr6:93051503-93051504	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs183520469	chr6:93051653-93051654	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs16885686	chr6:93051709-93051710	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs35480186	chr6:93051812-93051813	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs189108338	chr6:93051847-93051848	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs114611513	chr6:93051858-93051859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs115633154	chr6:93051871-93051872	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs149015767	chr6:93051934-93051935	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs527301922	chr6:93051947-93051948	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs559309919	chr6:93051950-93051951	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs193131927	chr6:93051973-93051974	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs13218796	chr6:93052003-93052004	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs542259608	chr6:93052013-93052014	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs560946010	chr6:93052022-93052023	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs376809577	chr6:93052036-93052037	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs529936499	chr6:93052110-93052111	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs543233114	chr6:93052119-93052120	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs563623824	chr6:93052122-93052123	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs532440658	chr6:93052126-93052127	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs151095311	chr6:93052171-93052172	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs565632628	chr6:93052192-93052193	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs528218199	chr6:93052212-93052213	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Developmental delay	19490664	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Adrenocortical carcinoma	18281524	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Neuropathy	19664229	CNVD
Neurodevelopmental disorder	22521361	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93047800-93052400	Enhancers	Hela-S3	cervix
2	chr6:93050600-93051000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:93050600-93052000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:93050800-93051000	Enhancers	Stomach Mucosa	stomach
5	chr6:93052400-93064000	Weak transcription	Hela-S3	cervix
6	chr6:93059800-93060200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr6:93064000-93064400	Enhancers	Adipose Nuclei	Adipose
8	chr6:93064000-93064400	Enhancers	Hela-S3	cervix
9	chr6:93064000-93064600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:93071800-93072000	Enhancers	Brain Hippocampus Middle	brain
11	chr6:93071800-93072000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr6:93071800-93072400	Enhancers	Brain Substantia Nigra	brain
13	chr6:93071800-93073000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:93071800-93073200	Enhancers	Fetal Lung	lung
15	chr6:93071800-93076600	Enhancers	HepG2	liver
16	chr6:93072000-93072200	Flanking Active TSS	Brain Hippocampus Middle	brain
17	chr6:93072000-93072200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
18	chr6:93072000-93072400	Enhancers	Brain Anterior Caudate	brain
19	chr6:93072000-93072400	Enhancers	Fetal Stomach	stomach
20	chr6:93072200-93072400	Active TSS	Brain Hippocampus Middle	brain
21	chr6:93072200-93072600	Enhancers	Brain Angular Gyrus	brain
22	chr6:93072200-93072600	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr6:93072200-93072600	Enhancers	Fetal Brain Male	brain
24	chr6:93072200-93073000	Enhancers	Small Intestine	intestine
25	chr6:93072400-93074400	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:93072400-93074600	Weak transcription	Brain Substantia Nigra	brain
27	chr6:93072400-93074600	Weak transcription	Fetal Stomach	stomach
28	chr6:93072400-93074800	Weak transcription	Brain Anterior Caudate	brain
29	chr6:93072600-93073000	Weak transcription	Brain Angular Gyrus	brain
30	chr6:93072600-93073000	Weak transcription	Fetal Brain Male	brain
31	chr6:93072600-93074800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr6:93073000-93073200	Enhancers	Brain Angular Gyrus	brain
33	chr6:93073000-93073200	Enhancers	Fetal Brain Male	brain
34	chr6:93073200-93074600	Weak transcription	Brain Angular Gyrus	brain
35	chr6:93073200-93075400	Weak transcription	Fetal Brain Male	brain
36	chr6:93074400-93075000	Enhancers	Brain Hippocampus Middle	brain
37	chr6:93074400-93075200	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr6:93074400-93075200	Enhancers	Brain Cingulate Gyrus	brain
39	chr6:93074600-93075000	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr6:93074600-93075000	Enhancers	Brain Angular Gyrus	brain
41	chr6:93074600-93075200	Enhancers	Fetal Stomach	stomach
42	chr6:93074600-93075400	Enhancers	Brain Substantia Nigra	brain
43	chr6:93074800-93075000	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr6:93074800-93075200	Enhancers	Brain Anterior Caudate	brain
45	chr6:93075000-93075600	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr6:93075200-93085800	Weak transcription	Fetal Stomach	stomach
47	chr6:93076600-93080000	Weak transcription	HepG2	liver
48	chr6:93080000-93082400	Enhancers	HepG2	liver
49	chr6:93085800-93086000	Enhancers	Fetal Stomach	stomach
50	chr6:93086000-93086600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links