Variant report

Variant	nsv886667
Chromosome Location	chr6:131807510-131876943
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:29194058..29196875-chr6:131816342..131819242,2	MCF-7	breast:
2	chr6:131503963..131504691-chr6:131855024..131855989,3	MCF-7	breast:
3	chr6:131840879..131841445-chr6:131949100..131949984,2	K562	blood:
4	chr6:131206708..131207515-chr6:131855456..131856172,2	MCF-7	breast:
5	chr6:131520459..131521490-chr6:131854662..131856165,8	MCF-7	breast:
6	chr6:131526816..131527805-chr6:131855115..131855774,2	MCF-7	breast:
7	chr6:131206288..131207158-chr6:131855006..131855929,4	K562	blood:
8	chr6:131520607..131521471-chr6:131854805..131855712,5	MCF-7	breast:
9	chr6:131840433..131840943-chr6:132231084..132231730,2	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARG1-1	chr6:131828613-131828721	NONHSAT114918
2	lnc-ARG1-1	chr6:131830003-131830191	NONHSAT114918
3	lnc-ARG1-2	chr6:131826150-131826462	FPKM1_group_28441_transcript_1
4	lnc-ARG1-2	chr6:131826619-131826851	FPKM1_group_28441_transcript_1

No data

Variant related genes	Relation type
ENSG00000226471	chromatin interactions
ENSG00000118507	chromatin interactions
ENSG00000154269	chromatin interactions
ENSG00000112282	chromatin interactions
ENSG00000100219	chromatin interactions

Extended variants
information (count: 2627 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:2627 , 50 per page) page: 1 2 3 4 5 6 7 ... 53

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2249821	chr6:131807510-131807511	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs570945457	chr6:131807549-131807550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112726884	chr6:131807558-131807559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs558005081	chr6:131807649-131807650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs200550386	chr6:131807672-131807673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs556990821	chr6:131807718-131807719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs576682002	chr6:131807730-131807731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs146567830	chr6:131807741-131807742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs555686634	chr6:131807750-131807751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs375675499	chr6:131807773-131807774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs550662204	chr6:131807777-131807778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs574049479	chr6:131807794-131807795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs541571331	chr6:131807810-131807811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs191070646	chr6:131807817-131807818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs578048184	chr6:131807832-131807833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs375995836	chr6:131807840-131807841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs377234967	chr6:131807943-131807944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570106596	chr6:131807955-131807956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs183263736	chr6:131807968-131807969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs187949021	chr6:131807972-131807973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs542803355	chr6:131807983-131807984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs560966708	chr6:131808025-131808026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs192239537	chr6:131808144-131808145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs141310532	chr6:131808146-131808147	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs201274432	chr6:131808204-131808205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs571031320	chr6:131808247-131808248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs531949161	chr6:131808269-131808270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs550172376	chr6:131808277-131808278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs570284700	chr6:131808284-131808285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs537392529	chr6:131808298-131808299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs2608966	chr6:131808317-131808318	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs200057383	chr6:131808324-131808325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs567789693	chr6:131808325-131808326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs535251517	chr6:131808331-131808332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs553467022	chr6:131808353-131808354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs578152106	chr6:131808379-131808380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs145083165	chr6:131808380-131808381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs183408976	chr6:131808388-131808389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs2249691	chr6:131808437-131808438	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs542591382	chr6:131808442-131808443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs80339675	chr6:131808483-131808484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs552994436	chr6:131808548-131808549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs4513822	chr6:131808569-131808570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs9493000	chr6:131808591-131808592	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs113452567	chr6:131808607-131808608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs7740929	chr6:131808622-131808623	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs532083331	chr6:131808635-131808636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs72997267	chr6:131808650-131808651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs563514008	chr6:131808673-131808674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs187945836	chr6:131808772-131808773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Gastric cancer	17908304	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21785460	CNVD
Kartagener syndrome	16639409	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Renal cell carcinoma	18592004	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:175 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131799400-131811200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:131809400-131810000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:131810000-131811600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:131811200-131812000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:131811200-131812000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:131811400-131813400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:131811600-131812200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:131811600-131813600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:131812000-131812200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:131812200-131812800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:131812800-131813000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:131813000-131813400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:131813400-131815600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:131815600-131818600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:131816600-131817000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:131818600-131820800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:131819400-131820000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:131819800-131830800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:131820800-131822400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:131821400-131824600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:131824200-131824800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:131824200-131825400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:131824400-131824800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:131824400-131825400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:131824600-131826600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:131824800-131825400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:131824800-131828600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:131824800-131830000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:131825400-131826200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:131825400-131830600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:131825400-131830800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:131826200-131826800	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr6:131826600-131830600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr6:131826800-131830800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr6:131827800-131828000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr6:131828000-131831800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr6:131828600-131829400	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr6:131829200-131829600	Active TSS	H1 Cell Line	embryonic stem cell
39	chr6:131829200-131830000	Active TSS	H9 Cell Line	embryonic stem cell
40	chr6:131829400-131829600	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr6:131829600-131830400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr6:131829600-131831400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr6:131830000-131830200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:131830000-131833200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr6:131830200-131830600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:131830400-131832400	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr6:131830600-131831400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:131830600-131832200	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr6:131830600-131832200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr6:131830600-131833800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links