Variant report

Variant	nsv886744
Chromosome Location	chr6:145452401-145528057
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:144906202..144908261-chr6:145458578..145460342,2	MCF-7	breast:
2	chr6:145430494..145433220-chr6:145468971..145470857,2	MCF-7	breast:
3	chr6:145458549..145459292-chr6:145535350..145535961,2	MCF-7	breast:
4	chr6:145215634..145217242-chr6:145456840..145459220,2	MCF-7	breast:
5	chr21:22732799..22733441-chr6:145481975..145482791,2	MCF-7	breast:
6	chr6:145353179..145355811-chr6:145521442..145523143,2	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UTRN-2	chr6:145469831-145470278	NONHSAT115389
2	lnc-UTRN-2	chr6:145475560-145475587	XLOC_005493
3	lnc-UTRN-2	chr6:145469832-145470278	XLOC_005493
4	lnc-UTRN-2	chr6:145475559-145475587	NONHSAT115389

No data

Variant related genes	Relation type
FADS2	miRNA target sites
HEATR7A	miRNA target sites

Extended variants
information (count: 1762 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:1762 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534447347	chr6:145453224-145453225	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs148754705	chr6:145453250-145453251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs192718280	chr6:145453261-145453262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs376860911	chr6:145453273-145453274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs555203629	chr6:145453385-145453386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs528041792	chr6:145453387-145453388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs184729109	chr6:145453452-145453453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs189544607	chr6:145453491-145453492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs370223513	chr6:145453511-145453512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs191466406	chr6:145453532-145453533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs541508320	chr6:145453544-145453545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs559887410	chr6:145453563-145453564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs183565787	chr6:145453596-145453597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs35470273	chr6:145453640-145453641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs140039331	chr6:145453643-145453644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs35353798	chr6:145453662-145453663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs548330777	chr6:145453669-145453670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs563594060	chr6:145453676-145453677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs530744515	chr6:145453679-145453680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs551941117	chr6:145453732-145453733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs2328636	chr6:145453746-145453747	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs189467531	chr6:145453798-145453799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs376460639	chr6:145453855-145453856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs568073163	chr6:145453896-145453897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs60226863	chr6:145453992-145453993	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs556728960	chr6:145454026-145454027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs139503548	chr6:145454029-145454030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs565064986	chr6:145454030-145454031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs550445934	chr6:145454033-145454034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs551624690	chr6:145454057-145454058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs71028331	chr6:145454060-145454061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs79361742	chr6:145454111-145454112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs559312666	chr6:145454157-145454158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs140349225	chr6:145454218-145454219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs541167016	chr6:145454304-145454305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs541650982	chr6:145454326-145454327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs553421077	chr6:145454327-145454328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs669469	chr6:145454381-145454382	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs547782879	chr6:145454429-145454430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs542182715	chr6:145454430-145454431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs368337962	chr6:145454449-145454450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs150969373	chr6:145454505-145454506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs371027258	chr6:145454507-145454508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs181778354	chr6:145454511-145454512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs77383342	chr6:145454542-145454543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs370037043	chr6:145454586-145454587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs545666369	chr6:145454605-145454606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs564043366	chr6:145454619-145454620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs574824904	chr6:145454633-145454634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs477572	chr6:145454643-145454644	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Endocrine pancreatic tumor	17914106	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:242 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145453200-145459200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:145456600-145456800	Enhancers	HepG2	liver
3	chr6:145456800-145457000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:145456800-145457600	Flanking Active TSS	HepG2	liver
5	chr6:145457000-145457200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:145457000-145460600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:145457200-145459800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:145457400-145458000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:145458000-145459200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:145458200-145460400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:145458800-145459200	Enhancers	Liver	Liver
12	chr6:145459200-145459400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:145459200-145460200	Weak transcription	Liver	Liver
14	chr6:145459200-145461400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:145459400-145459800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:145459800-145461400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:145459800-145461600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:145460000-145460400	Enhancers	Brain Germinal Matrix	brain
19	chr6:145460000-145460600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:145460000-145460800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:145460000-145460800	Enhancers	Fetal Brain Male	brain
22	chr6:145460000-145461000	Enhancers	Fetal Intestine Large	intestine
23	chr6:145460000-145461000	Enhancers	Fetal Intestine Small	intestine
24	chr6:145460000-145461200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:145460000-145461200	Enhancers	NHDF-Ad	bronchial
26	chr6:145460000-145461400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:145460000-145461400	Enhancers	Adipose Nuclei	Adipose
28	chr6:145460200-145460800	Enhancers	Fetal Brain Female	brain
29	chr6:145460200-145461000	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr6:145460200-145461000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:145460200-145461200	Enhancers	Liver	Liver
32	chr6:145460400-145461000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:145460400-145461400	Weak transcription	Brain Germinal Matrix	brain
34	chr6:145460600-145460800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:145460600-145461000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr6:145460600-145461000	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr6:145460800-145461200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:145461000-145462800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr6:145461000-145463400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:145461200-145462000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:145461400-145462200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:145461400-145463000	Enhancers	Brain Germinal Matrix	brain
43	chr6:145461400-145469200	Weak transcription	Adipose Nuclei	Adipose
44	chr6:145461600-145462200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr6:145461600-145468400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:145462200-145463200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:145462600-145462800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:145462800-145463200	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr6:145463400-145468200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:145468200-145470200	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links