Variant report

Variant	nsv886771
Chromosome Location	chr6:150411442-150437749
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150417796..150419721-chr6:150422461..150424493,2	K562	blood:
2	chr6:150428307..150430967-chr6:150432896..150435130,3	K562	blood:
3	chr6:150418965..150420517-chr6:150430533..150432429,2	K562	blood:
4	chr6:150417796..150419721-chr6:150422461..150424493,2	K562	blood:
5	chr6:150419610..150420185-chr6:150610668..150611430,2	K562	blood:
6	chr6:150431155..150433658-chr6:150438075..150440832,2	K562	blood:
7	chr6:150432794..150435145-chr6:150436084..150437701,2	K562	blood:
8	chr6:150421701..150424614-chr6:150433615..150435705,2	K562	blood:
9	chr6:150418965..150420517-chr6:150430533..150432429,2	K562	blood:
10	chr6:150409275..150411139-chr6:150425128..150427756,2	K562	blood:
11	chr6:150421701..150424614-chr6:150433615..150435705,2	K562	blood:
12	chr6:150410116..150412744-chr6:150428842..150431815,2	K562	blood:
13	chr6:150410347..150413118-chr6:150413236..150416818,3	MCF-7	breast:
14	chr6:150429467..150431615-chr6:150433322..150437434,3	K562	blood:
15	chr6:149636340..149638301-chr6:150416961..150418644,2	K562	blood:
16	chr6:150432794..150435145-chr6:150436084..150437701,2	K562	blood:
17	chr6:150429467..150431615-chr6:150433322..150437434,3	K562	blood:
18	chr6:150426417..150429410-chr6:150487738..150490654,2	K562	blood:
19	chr6:150420929..150422703-chr6:150428326..150430256,2	K562	blood:
20	chr6:150430115..150432623-chr6:150435184..150437434,2	K562	blood:
21	chr6:150420929..150422703-chr6:150428326..150430256,2	K562	blood:
22	chr6:150410347..150413118-chr6:150413236..150416818,3	MCF-7	breast:
23	chr6:150430115..150432623-chr6:150435184..150437434,2	K562	blood:
24	chr6:150427042..150429216-chr6:150430762..150432440,2	K562	blood:
25	chr6:150410116..150412744-chr6:150428842..150431815,2	K562	blood:
26	chr6:150428307..150430967-chr6:150432896..150435130,3	K562	blood:
27	chr6:150427042..150429216-chr6:150430762..150432440,2	K562	blood:

No data

Extended variants
information (count: 1242 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:1242 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11759611	chr6:150411442-150411443	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs9384110	chr6:150411492-150411493	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs371394926	chr6:150411504-150411505	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs147025782	chr6:150411514-150411515	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs576950252	chr6:150411528-150411529	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs546010076	chr6:150411544-150411545	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs559308648	chr6:150411551-150411552	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs113193275	chr6:150411553-150411554	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs369124589	chr6:150411565-150411566	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs13216978	chr6:150411567-150411568	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs183414843	chr6:150411580-150411581	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs370643255	chr6:150411584-150411585	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs541429510	chr6:150411597-150411598	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs187575549	chr6:150411601-150411602	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs11755079	chr6:150411758-150411759	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs532575036	chr6:150411785-150411786	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs190836830	chr6:150411808-150411809	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs116446091	chr6:150411823-150411824	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs77797658	chr6:150411852-150411853	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs113699839	chr6:150411896-150411897	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs547323971	chr6:150411899-150411900	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs570431194	chr6:150411909-150411910	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs536683821	chr6:150411914-150411915	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs556955833	chr6:150411928-150411929	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs182601131	chr6:150411953-150411954	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs539370186	chr6:150411991-150411992	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs553094126	chr6:150412067-150412068	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs17079296	chr6:150412077-150412078	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs541530910	chr6:150412114-150412115	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs147645501	chr6:150412118-150412119	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs549562458	chr6:150412119-150412120	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs113293743	chr6:150412120-150412121	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs563553588	chr6:150412121-150412122	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs77584505	chr6:150412124-150412125	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs113914606	chr6:150412126-150412127	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs138583139	chr6:150412130-150412131	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs528702985	chr6:150412131-150412132	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs191848329	chr6:150412133-150412134	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs567845974	chr6:150412140-150412141	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs536773721	chr6:150412149-150412150	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs550519609	chr6:150412158-150412159	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs552138120	chr6:150412159-150412160	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs184445916	chr6:150412160-150412161	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs533792574	chr6:150412163-150412164	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs187626695	chr6:150412166-150412167	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs573063921	chr6:150412167-150412168	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs553555337	chr6:150412168-150412169	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs373240218	chr6:150412172-150412173	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs149283344	chr6:150412174-150412175	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs143498703	chr6:150412175-150412176	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
Cancer	17160897	CNVD
Breast cancer	17417639	CNVD
Breast cancer	17850661	CNVD
Renal cell carcinoma	18765545	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21804112	CNVD
Myelofibrosis	22110671	CNVD
Ovarian neoplasms	16753589	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20556506	CNVD
Hirschsprung''s Disease	21712996	CNVD
Testicular germ cell tumor	18059402	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150408800-150412400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:150409000-150412400	Weak transcription	HMEC	breast
3	chr6:150409000-150412600	Weak transcription	NHEK	skin
4	chr6:150409000-150413800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:150410000-150412400	Weak transcription	Brain Angular Gyrus	brain
6	chr6:150410200-150411600	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:150410200-150412400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:150410200-150412600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:150410400-150411600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:150410400-150411600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:150410400-150412400	Weak transcription	Brain Anterior Caudate	brain
12	chr6:150410400-150421800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:150410600-150412400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:150410600-150414400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:150411400-150413000	Enhancers	Brain Substantia Nigra	brain
16	chr6:150411600-150411800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:150411600-150411800	Enhancers	Brain Hippocampus Middle	brain
18	chr6:150411600-150411800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:150411600-150413200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:150411800-150412200	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:150411800-150412200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:150411800-150413200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:150412200-150413000	Enhancers	Brain Hippocampus Middle	brain
24	chr6:150412200-150413800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr6:150412400-150412800	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr6:150412400-150413000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:150412400-150413000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:150412400-150413000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:150412400-150413000	Enhancers	Brain Angular Gyrus	brain
30	chr6:150412400-150413000	Enhancers	Brain Anterior Caudate	brain
31	chr6:150412400-150413000	Enhancers	HMEC	breast
32	chr6:150412400-150416200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr6:150412600-150412800	Enhancers	Fetal Brain Male	brain
34	chr6:150412600-150413000	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr6:150412600-150413000	Enhancers	Brain Germinal Matrix	brain
36	chr6:150412600-150413000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:150412600-150413000	Enhancers	Fetal Brain Female	brain
38	chr6:150412600-150413000	Enhancers	NHEK	skin
39	chr6:150412800-150413000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:150412800-150413000	Enhancers	Brain Cingulate Gyrus	brain
41	chr6:150412800-150413200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:150413000-150413400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:150413000-150414200	Weak transcription	Fetal Brain Female	brain
44	chr6:150413000-150414400	Weak transcription	Brain Anterior Caudate	brain
45	chr6:150413000-150414400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr6:150413000-150414600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:150413000-150414600	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:150413000-150414600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:150413000-150414800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:150413200-150413800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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