Variant report

Variant	nsv886816
Chromosome Location	chr6:161225303-161286450
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:161260541..161262340-chr6:161262561..161265121,3	K562	blood:
2	chr6:161227686..161230343-chr6:161232478..161234190,2	K562	blood:
3	chr6:161271079..161273700-chr6:161275442..161277966,3	K562	blood:
4	chr6:161248150..161249930-chr6:161255516..161257589,2	K562	blood:
5	chr6:161227686..161230343-chr6:161232478..161234190,2	K562	blood:
6	chr6:161235361..161237238-chr6:161238681..161240959,2	K562	blood:
7	chr6:161227565..161229491-chr6:161229972..161232150,2	MCF-7	breast:
8	chr6:161248150..161249930-chr6:161255516..161257589,2	K562	blood:
9	chr6:161227565..161229491-chr6:161229972..161232150,2	MCF-7	breast:
10	chr6:161231600..161233858-chr6:161239225..161241427,2	K562	blood:
11	chr6:161266955..161270556-chr6:161271678..161274838,4	K562	blood:
12	chr6:161271079..161273454-chr6:161275442..161277966,2	K562	blood:
13	chr6:161282793..161285621-chr6:161332343..161335165,2	K562	blood:
14	chr6:161255639..161258104-chr6:161293113..161295110,2	K562	blood:
15	chr6:161271079..161273454-chr6:161275442..161277966,2	K562	blood:
16	chr6:161266955..161270556-chr6:161271678..161274838,4	K562	blood:
17	chr6:161231600..161233858-chr6:161239225..161241427,2	K562	blood:
18	chr6:161260541..161262340-chr6:161262561..161265121,3	K562	blood:
19	chr6:161250769..161254707-chr6:161411304..161414099,3	K562	blood:
20	chr6:161271079..161273700-chr6:161275442..161277966,3	K562	blood:
21	chr6:161235361..161237238-chr6:161238681..161240959,2	K562	blood:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLG-3	chr6:161283570-161283773	l_3310_chr6:161267548-161283742_testes
2	lnc-LPA-1	chr6:161227975-161228213	XLOC_005905
3	lnc-PLG-3	chr6:161268885-161269038	l_3310_chr6:161267548-161283742_testes
4	lnc-LPA-2	chr6:161236582-161237293	XLOC_005906
5	lnc-PLG-3	chr6:161267549-161267600	l_3310_chr6:161267548-161283742_testes
6	lnc-PLG-3	chr6:161267391-161267600	NONHSAT115916
7	lnc-PLG-4	chr6:161272102-161272394	NONHSAT115917
8	lnc-PLG-3	chr6:161268016-161268184	NONHSAT115916
9	lnc-LPA-2	chr6:161238186-161238383	XLOC_005906
10	lnc-LPA-2	chr6:161237596-161237875	XLOC_005906
11	lnc-PLG-3	chr6:161268128-161268254	l_3310_chr6:161267548-161283742_testes

No data

Variant related genes	Relation type
ENSG00000085511	chromatin interactions
ENSG00000272841	chromatin interactions

Extended variants
information (count: 604 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:604 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1590185	chr6:161225303-161225304	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs544199142	chr6:161225358-161225359	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs561052432	chr6:161225533-161225534	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs530096637	chr6:161225541-161225542	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs369959515	chr6:161225577-161225578	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs544911265	chr6:161225637-161225638	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs542428715	chr6:161225641-161225642	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs187597991	chr6:161225713-161225714	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs151310671	chr6:161225717-161225718	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs114981402	chr6:161225723-161225724	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs9458039	chr6:161225730-161225731	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs59282694	chr6:161225739-161225740	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs112561333	chr6:161225785-161225786	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs1740466	chr6:161225836-161225837	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs376360432	chr6:161225837-161225838	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs370111394	chr6:161225849-161225850	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs150070668	chr6:161225863-161225864	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs147749781	chr6:161225865-161225866	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs191884099	chr6:161225881-161225882	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs145349920	chr6:161225900-161225901	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs200986179	chr6:161225901-161225902	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs35350589	chr6:161225903-161225904	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs369962439	chr6:161226043-161226044	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs559035104	chr6:161226054-161226055	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs575849594	chr6:161226076-161226077	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs544211043	chr6:161226102-161226103	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs373973320	chr6:161226133-161226134	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs554511240	chr6:161226169-161226170	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs549711361	chr6:161226194-161226195	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs182947942	chr6:161226213-161226214	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs142328085	chr6:161226229-161226230	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs560622407	chr6:161226237-161226238	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs79207933	chr6:161226248-161226249	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs13213765	chr6:161226256-161226257	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs187499279	chr6:161226265-161226266	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs545182915	chr6:161226300-161226301	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs565033833	chr6:161226360-161226361	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs146368052	chr6:161226368-161226369	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs190148880	chr6:161226392-161226393	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs570158121	chr6:161227992-161227993	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs530401880	chr6:161228000-161228001	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs188095307	chr6:161228103-161228104	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs138145781	chr6:161228119-161228120	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs574806570	chr6:161228124-161228125	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs142300064	chr6:161228130-161228131	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs553769372	chr6:161228200-161228201	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs185098040	chr6:161230613-161230614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs138087797	chr6:161230633-161230634	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs189908052	chr6:161230687-161230688	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs557617040	chr6:161230784-161230785	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chordoma	18071362	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161224000-161226400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:161230600-161231400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:161230800-161231000	Enhancers	A549	lung
4	chr6:161230800-161231400	Enhancers	GM12878-XiMat	blood
5	chr6:161231000-161231400	Flanking Active TSS	A549	lung
6	chr6:161231200-161231600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:161231200-161231800	Enhancers	HepG2	liver
8	chr6:161231400-161231800	Active TSS	A549	lung
9	chr6:161231400-161233000	Weak transcription	GM12878-XiMat	blood
10	chr6:161233000-161233600	Enhancers	GM12878-XiMat	blood
11	chr6:161250200-161250600	Active TSS	K562	blood
12	chr6:161252200-161252800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:161252200-161253000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:161252600-161253000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:161252600-161253000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:161252600-161253000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:161252600-161253400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:161252800-161253200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:161252800-161253200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:161258200-161258400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:161258200-161258400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:161258200-161258600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:161258600-161258800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr6:161280200-161280600	Enhancers	Brain Anterior Caudate	brain
25	chr6:161280200-161280600	Enhancers	Fetal Brain Male	brain
26	chr6:161281000-161281200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:161281000-161281200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:161281200-161284800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:161282000-161285400	Weak transcription	Right Atrium	heart
30	chr6:161283000-161283400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr6:161284800-161285200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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