Variant report

Variant	nsv886829
Chromosome Location	chr6:162162433-162264250
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:162212614..162214396-chr6:162214709..162217609,2	MCF-7	breast:
2	chr6:162258059..162258779-chr6:162552660..162553528,2	MCF-7	breast:
3	chr20:46012429..46013123-chr6:162169752..162170322,2	MCF-7	breast:
4	chr6:162216587..162218691-chr6:162225101..162227602,2	K562	blood:
5	chr6:162207547..162209957-chr6:162210445..162213994,3	K562	blood:
6	chr6:162207547..162209957-chr6:162210445..162213994,3	K562	blood:
7	chr6:162211723..162213448-chr6:162215614..162217575,2	K562	blood:
8	chr6:162232298..162233805-chr6:162237071..162239613,2	K562	blood:
9	chr6:162211723..162213448-chr6:162215614..162217575,2	K562	blood:
10	chr6:162216587..162218691-chr6:162225101..162227602,2	K562	blood:
11	chr6:162258117..162258784-chr6:162338530..162339165,2	MCF-7	breast:
12	chr6:162232298..162233805-chr6:162237071..162239613,2	K562	blood:
13	chr6:162212614..162214396-chr6:162214709..162217609,2	MCF-7	breast:

No data

Extended variants
information (count: 4440 )
Associated
traits (count: 97 )

Variant overlapped rSNPs/rCNVs (count:4440 , 50 per page) page: 1 2 3 4 5 6 7 ... 89

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs737631	chr6:162162433-162162434	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs111437130	chr6:162162444-162162445	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs372942088	chr6:162162450-162162451	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs547799027	chr6:162162451-162162452	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs375792643	chr6:162162475-162162476	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs149041353	chr6:162162484-162162485	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs77561195	chr6:162162501-162162502	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs567414902	chr6:162162532-162162533	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs570210934	chr6:162162541-162162542	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs191725928	chr6:162162544-162162545	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs555858865	chr6:162162563-162162564	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs761620	chr6:162162565-162162566	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs182959569	chr6:162162592-162162593	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs142047959	chr6:162162605-162162606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs79379671	chr6:162162638-162162639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs370858681	chr6:162162650-162162651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs35621098	chr6:162162658-162162659	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs562330968	chr6:162162662-162162663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs531362136	chr6:162162672-162162673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs141191949	chr6:162162675-162162676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs115115938	chr6:162162677-162162678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs73783380	chr6:162162688-162162689	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs547357001	chr6:162162692-162162693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs386707987	chr6:162162703-162162704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs112685633	chr6:162162705-162162706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs538930704	chr6:162162730-162162731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs200049595	chr6:162162749-162162750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs112644953	chr6:162162752-162162753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs116405208	chr6:162162765-162162766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs368000411	chr6:162162786-162162787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs532322431	chr6:162162787-162162788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs536009555	chr6:162162825-162162826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs138442370	chr6:162162853-162162854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs142537007	chr6:162162886-162162887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs370407680	chr6:162162904-162162905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs188030006	chr6:162162934-162162935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs558128973	chr6:162162961-162162962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs555391769	chr6:162162962-162162963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs145052701	chr6:162162974-162162975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs370882645	chr6:162162983-162162984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs537040839	chr6:162162991-162162992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs374045838	chr6:162163009-162163010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs150580684	chr6:162163010-162163011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs149727156	chr6:162163011-162163012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs147404339	chr6:162163012-162163013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs572299178	chr6:162163014-162163015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs150282395	chr6:162163023-162163024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs555991457	chr6:162163065-162163066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs113514025	chr6:162163076-162163077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs374365666	chr6:162163087-162163088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:97)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Intellectual disability	22102821	CNVD
Parkinson disease	0	CNVD
Bipolar disorder	19114987	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:469 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162158000-162165400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:162161800-162162600	Enhancers	Duodenum Mucosa	Duodenum
3	chr6:162161800-162163800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:162163800-162164000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:162163800-162164800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:162164000-162164400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:162164400-162165600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:162164600-162165000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:162164800-162165000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:162164800-162165600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:162164800-162166800	Enhancers	NH-A	brain
12	chr6:162165000-162166800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:162165000-162167200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:162165400-162165600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:162165400-162166800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:162165600-162165800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:162165600-162167000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:162165600-162167200	Enhancers	Brain Germinal Matrix	brain
19	chr6:162165600-162169600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:162165800-162166800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:162165800-162167200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:162166400-162166600	Enhancers	Brain Hippocampus Middle	brain
23	chr6:162166400-162166600	Enhancers	Pancreas	Pancrea
24	chr6:162166400-162166800	Enhancers	Brain Substantia Nigra	brain
25	chr6:162166400-162167200	Enhancers	Brain Angular Gyrus	brain
26	chr6:162166400-162167400	Enhancers	Brain Cingulate Gyrus	brain
27	chr6:162166600-162166800	Enhancers	Brain Anterior Caudate	brain
28	chr6:162166600-162167200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr6:162166600-162167400	Flanking Active TSS	Brain Hippocampus Middle	brain
30	chr6:162166600-162169600	Weak transcription	Pancreas	Pancrea
31	chr6:162166800-162167000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:162166800-162167200	Active TSS	Brain Anterior Caudate	brain
33	chr6:162166800-162167200	Enhancers	HepG2	liver
34	chr6:162166800-162167200	Flanking Active TSS	NH-A	brain
35	chr6:162166800-162167200	Active TSS	NHDF-Ad	bronchial
36	chr6:162166800-162167400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:162166800-162167400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:162166800-162167400	Flanking Active TSS	Brain Substantia Nigra	brain
39	chr6:162167000-162167200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:162167000-162167400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr6:162167200-162167400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:162167200-162167400	Enhancers	Brain Anterior Caudate	brain
43	chr6:162167200-162169600	Weak transcription	Brain Angular Gyrus	brain
44	chr6:162167200-162169600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:162167200-162171400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr6:162167200-162171400	Weak transcription	NH-A	brain
47	chr6:162167400-162167600	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr6:162167400-162169400	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:162167400-162169600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr6:162167400-162169800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links