Variant report

Variant	nsv886847
Chromosome Location	chr6:162450471-162614973
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:162574333..162576032-chr6:162578404..162580150,2	K562	blood:
2	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
3	chr6:162525404..162526979-chr6:162529518..162531928,2	MCF-7	breast:
4	chr6:162470841..162473078-chr6:162475586..162477804,2	MCF-7	breast:
5	chr3:66689243..66689865-chr6:162514238..162514739,2	MCF-7	breast:
6	chr6:162436271..162438282-chr6:162512437..162514970,2	K562	blood:
7	chr6:162500411..162502828-chr6:162504694..162507642,2	K562	blood:
8	chr6:162258059..162258779-chr6:162552660..162553528,2	MCF-7	breast:
9	chr6:162574333..162576032-chr6:162578404..162580150,2	K562	blood:
10	chr6:162470841..162473078-chr6:162475586..162477804,2	MCF-7	breast:
11	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
12	chr6:162525404..162526979-chr6:162529518..162531928,2	MCF-7	breast:
13	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
14	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
15	chr6:162500411..162502828-chr6:162504694..162507642,2	K562	blood:
16	chr6:162613600..162615384-chr6:162617227..162618872,2	K562	blood:

No data

Extended variants
information (count: 5681 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:5681 , 50 per page) page: 1 2 3 4 5 6 7 ... 114

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2849567	chr6:162450471-162450472	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs562520879	chr6:162450488-162450489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs143903682	chr6:162450516-162450517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs80225669	chr6:162450572-162450573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs542789332	chr6:162450579-162450580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs557783716	chr6:162450596-162450597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs185267252	chr6:162450656-162450657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs543529993	chr6:162450667-162450668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs529727140	chr6:162450680-162450681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs547885643	chr6:162450715-162450716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs187409093	chr6:162450729-162450730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs566292573	chr6:162450775-162450776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs527476256	chr6:162450777-162450778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs549095580	chr6:162450793-162450794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs376539694	chr6:162450795-162450796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs528331807	chr6:162450824-162450825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs375752880	chr6:162450854-162450855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs544939221	chr6:162450862-162450863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552002691	chr6:162450865-162450866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs115494573	chr6:162451034-162451035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs533181787	chr6:162451052-162451053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs79417468	chr6:162451053-162451054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs146993514	chr6:162451066-162451067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs529397040	chr6:162451099-162451100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs138017764	chr6:162451118-162451119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs375258347	chr6:162451137-162451138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs368223413	chr6:162451142-162451143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs566309993	chr6:162451152-162451153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs534997188	chr6:162451246-162451247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs558523909	chr6:162451262-162451263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs34545265	chr6:162451264-162451265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs370909863	chr6:162451317-162451318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs570638032	chr6:162451359-162451360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs1893545	chr6:162451368-162451369	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs67284712	chr6:162451386-162451387	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs73590324	chr6:162451496-162451497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs536351784	chr6:162451536-162451537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs552892534	chr6:162451569-162451570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs573024324	chr6:162451597-162451598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs544878384	chr6:162451626-162451627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs192540708	chr6:162451659-162451660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs575184349	chr6:162451673-162451674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs543370661	chr6:162451692-162451693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs563703733	chr6:162451768-162451769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs144095296	chr6:162451850-162451851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs553890433	chr6:162451857-162451858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs535909785	chr6:162451860-162451861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs184725377	chr6:162451867-162451868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs1893544	chr6:162451920-162451921	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs374767788	chr6:162451961-162451962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Intellectual disability	22102821	CNVD
Parkinson disease	0	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Bipolar disorder	19114987	CNVD
Parkinson disease	21829596	CNVD
Schizophrenia	23813976	CNVD
Gastric cancer	22315472	CNVD
Autism	19404257	CNVD
Schizophrenia	20967226	CNVD
Schizophrenia	21346763	CNVD

Chromatin state (count:499 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162444800-162452200	Weak transcription	Pancreas	Pancrea
2	chr6:162452600-162452800	Enhancers	Right Atrium	heart
3	chr6:162452800-162453800	Weak transcription	Right Atrium	heart
4	chr6:162453400-162454400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:162453400-162454400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:162453400-162454400	Enhancers	NHDF-Ad	bronchial
7	chr6:162453600-162454200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:162453800-162454200	Enhancers	Right Atrium	heart
9	chr6:162455400-162456000	Enhancers	NHEK	skin
10	chr6:162466800-162467000	Enhancers	Pancreas	Pancrea
11	chr6:162467000-162471800	Weak transcription	Pancreas	Pancrea
12	chr6:162470200-162479400	Weak transcription	Ovary	ovary
13	chr6:162471600-162476600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:162471800-162473000	Enhancers	Pancreas	Pancrea
15	chr6:162471800-162476800	Weak transcription	Right Ventricle	heart
16	chr6:162472200-162474800	Weak transcription	Brain Substantia Nigra	brain
17	chr6:162472400-162472600	Enhancers	Fetal Brain Male	brain
18	chr6:162473000-162475000	Weak transcription	Pancreas	Pancrea
19	chr6:162473600-162474400	Enhancers	Fetal Brain Female	brain
20	chr6:162474000-162475200	Enhancers	Liver	Liver
21	chr6:162474000-162478000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:162474200-162474400	Enhancers	Left Ventricle	heart
23	chr6:162474200-162474600	Enhancers	Fetal Brain Male	brain
24	chr6:162474400-162479600	Weak transcription	Left Ventricle	heart
25	chr6:162475000-162476000	Enhancers	Pancreas	Pancrea
26	chr6:162475200-162478200	Weak transcription	Liver	Liver
27	chr6:162476000-162476400	Weak transcription	Pancreas	Pancrea
28	chr6:162476200-162477400	Enhancers	A549	lung
29	chr6:162476400-162477600	Enhancers	Right Atrium	heart
30	chr6:162476400-162478200	Enhancers	Pancreas	Pancrea
31	chr6:162476600-162476800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:162476600-162476800	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:162476600-162477000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:162476600-162478200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:162476800-162477000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:162476800-162477400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:162476800-162477400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:162476800-162478200	Enhancers	Right Ventricle	heart
39	chr6:162476800-162478600	Enhancers	Fetal Heart	heart
40	chr6:162477000-162477200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr6:162477000-162477200	Bivalent Enhancer	HepG2	liver
42	chr6:162477000-162477400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
43	chr6:162477000-162477400	Genic enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:162477000-162478200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:162477200-162477600	Enhancers	HepG2	liver
46	chr6:162477200-162477800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:162477200-162478200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:162477200-162478800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:162477400-162477600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:162477400-162477800	Enhancers	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links