Variant report

Variant	nsv886860
Chromosome Location	chr6:162627290-162953855
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:162820265..162823089-chr6:162827852..162829559,2	K562	blood:
2	chr6:162799485..162803733-chr6:162804296..162807777,5	K562	blood:
3	chr6:162799485..162803733-chr6:162804296..162807777,5	K562	blood:
4	chr6:162863816..162864618-chr6:163271757..163272511,2	MCF-7	breast:
5	chr6:162666890..162668464-chr6:162670216..162671922,2	K562	blood:
6	chr6:162661286..162663139-chr6:162673530..162675376,2	K562	blood:
7	chr6:162643217..162645721-chr6:162646719..162648950,2	K562	blood:
8	chr6:162671180..162673472-chr6:162808694..162811227,2	K562	blood:
9	chr6:162902802..162905070-chr6:162905406..162907332,2	K562	blood:
10	chr6:162768506..162770213-chr6:162786241..162788330,2	K562	blood:
11	chr6:162661286..162663139-chr6:162673530..162675376,2	K562	blood:
12	chr6:162763017..162765353-chr6:162767098..162769301,2	K562	blood:
13	chr6:162768506..162770213-chr6:162786241..162788330,2	K562	blood:
14	chr6:162721411..162723925-chr6:162726328..162729326,2	K562	blood:
15	chr6:162820265..162823089-chr6:162827852..162829559,2	K562	blood:
16	chr6:162763017..162765353-chr6:162767098..162769301,2	K562	blood:
17	chr6:162902802..162905070-chr6:162905406..162907332,2	K562	blood:
18	chr6:162666890..162668464-chr6:162670216..162671922,2	K562	blood:
19	chr6:162863367..162864320-chr6:163157771..163158572,4	MCF-7	breast:
20	chr6:162721411..162723925-chr6:162726328..162729326,2	K562	blood:
21	chr6:162671180..162673472-chr6:162808694..162811227,2	K562	blood:
22	chr6:162643217..162645721-chr6:162646719..162648950,2	K562	blood:

No data

Extended variants
information (count: 13666 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:13666 , 50 per page) page: 1 2 3 4 5 6 7 ... 274

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9458486	chr6:162627290-162627291	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs564420527	chr6:162627298-162627299	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs572102514	chr6:162627333-162627334	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs184184884	chr6:162627392-162627393	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs74791843	chr6:162627447-162627448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs577842100	chr6:162627455-162627456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs543624458	chr6:162627456-162627457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs149951360	chr6:162627508-162627509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs564024323	chr6:162627533-162627534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs531577630	chr6:162627541-162627542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs574209752	chr6:162627558-162627559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs146679840	chr6:162627625-162627626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs559133568	chr6:162627645-162627646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs528084710	chr6:162627732-162627733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs6929905	chr6:162627770-162627771	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs564952349	chr6:162627786-162627787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs187802631	chr6:162627808-162627809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs550471464	chr6:162627843-162627844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs112432050	chr6:162627862-162627863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs567563126	chr6:162627863-162627864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs192458517	chr6:162627917-162627918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs139352763	chr6:162627932-162627933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs141826326	chr6:162627933-162627934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs534673617	chr6:162627955-162627956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs557849391	chr6:162627982-162627983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs529335148	chr6:162627986-162627987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs113505557	chr6:162628008-162628009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs537661196	chr6:162628097-162628098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs557226837	chr6:162628122-162628123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs574173673	chr6:162628180-162628181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs542992282	chr6:162628184-162628185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs184674152	chr6:162628213-162628214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs189085826	chr6:162628220-162628221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs9365386	chr6:162628260-162628261	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs564990305	chr6:162628272-162628273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs370252552	chr6:162628297-162628298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs202211787	chr6:162628311-162628312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs550755876	chr6:162628318-162628319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs560964434	chr6:162628326-162628327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs147040183	chr6:162628336-162628337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs11969594	chr6:162628339-162628340	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs566398486	chr6:162628351-162628352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs181541140	chr6:162628377-162628378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs551320155	chr6:162628390-162628391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs367943323	chr6:162628391-162628392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs537194689	chr6:162628435-162628436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs371564456	chr6:162628471-162628472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs557419656	chr6:162628476-162628477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs567798253	chr6:162628496-162628497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs555250306	chr6:162628507-162628508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Parkinson disease	0	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Parkinson disease	21829596	CNVD
Schizophrenia	20967226	CNVD
Schizophrenia	21346763	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Attention deficit hyperactivity disorder	19546859	CNVD
Autism	22495309	CNVD
Glioblastoma multiforme	21138945	CNVD
Ovarian cancer	22355333	CNVD
Schizophrenia	19805367	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:1039 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162622400-162632000	Weak transcription	Left Ventricle	heart
2	chr6:162622400-162636000	Weak transcription	Right Atrium	heart
3	chr6:162624800-162632000	Weak transcription	Gastric	stomach
4	chr6:162624800-162632000	Weak transcription	Psoas Muscle	Psoas
5	chr6:162627000-162627400	Enhancers	Pancreas	Pancrea
6	chr6:162627400-162632000	Weak transcription	Pancreas	Pancrea
7	chr6:162631400-162631600	Enhancers	HSMMtube	muscle
8	chr6:162631800-162632200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:162631800-162632400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:162631800-162632400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:162632000-162632400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:162632000-162632400	Enhancers	Left Ventricle	heart
13	chr6:162632000-162632400	Enhancers	Psoas Muscle	Psoas
14	chr6:162632000-162632400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:162632000-162632600	Enhancers	Gastric	stomach
16	chr6:162632000-162633200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:162632000-162633200	Enhancers	Pancreas	Pancrea
18	chr6:162632000-162633400	Enhancers	Fetal Heart	heart
19	chr6:162632000-162646000	Weak transcription	Aorta	Aorta
20	chr6:162632200-162632400	Enhancers	HSMMtube	muscle
21	chr6:162632600-162633200	Weak transcription	Gastric	stomach
22	chr6:162633200-162633400	Enhancers	Gastric	stomach
23	chr6:162639200-162639600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:162639600-162643400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:162643400-162643800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:162643600-162643800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr6:162643800-162651200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:162647400-162647600	Enhancers	Right Atrium	heart
29	chr6:162647600-162649800	Weak transcription	Right Atrium	heart
30	chr6:162647800-162648000	Enhancers	Left Ventricle	heart
31	chr6:162647800-162651400	Enhancers	Fetal Heart	heart
32	chr6:162648800-162649000	Enhancers	Fetal Brain Female	brain
33	chr6:162649000-162653200	Weak transcription	Fetal Brain Female	brain
34	chr6:162649800-162651000	Enhancers	Right Atrium	heart
35	chr6:162650000-162651600	Enhancers	Left Ventricle	heart
36	chr6:162650200-162652200	Enhancers	Fetal Brain Male	brain
37	chr6:162650400-162650600	Enhancers	Psoas Muscle	Psoas
38	chr6:162651000-162651400	Weak transcription	Right Atrium	heart
39	chr6:162651000-162651800	Enhancers	Colon Smooth Muscle	Colon
40	chr6:162651200-162651400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr6:162651200-162651600	Enhancers	Fetal Stomach	stomach
42	chr6:162651200-162651800	Enhancers	Adipose Nuclei	Adipose
43	chr6:162651200-162651800	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr6:162651200-162652000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:162651200-162652000	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr6:162651200-162652200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:162651400-162651600	Enhancers	Psoas Muscle	Psoas
48	chr6:162651400-162651600	Enhancers	Right Atrium	heart
49	chr6:162651400-162651800	Flanking Active TSS	Fetal Heart	heart
50	chr6:162651400-162651800	Enhancers	Rectal Smooth Muscle	rectum

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