Variant report

Variant	nsv886953
Chromosome Location	chr6:167811764-167832771
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:167813417..167815135-chr6:167817698..167819518,2	K562	blood:
2	chr6:167818746..167821496-chr6:167831177..167833070,2	K562	blood:
3	chr20:57615578..57617834-chr6:167831422..167833295,2	MCF-7	breast:
4	chr6:167818746..167821496-chr6:167831177..167833070,2	K562	blood:
5	chr6:167823826..167826272-chr6:167829672..167831832,2	K562	blood:
6	chr6:167813417..167815135-chr6:167817698..167819518,2	K562	blood:
7	chr6:167662732..167663315-chr6:167819023..167819880,2	K562	blood:
8	chr6:167823826..167826272-chr6:167829672..167831832,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCP10-2	chr6:167822441-167822752	ucscGeneNc_uc003qvx_1
2	lnc-TCP10-3	chr6:167826637-167827774	ucscGeneNc_uc003qvy_1
3	lnc-TCP10-3	chr6:167823155-167825466	ucscGeneNc_uc003qvy_1
4	lnc-TCP10-2	chr6:167810373-167814438	ucscGeneNc_uc003qvx_1
5	lnc-TCP10-2	chr6:167821589-167821728	ucscGeneNc_uc003qvx_1
6	lnc-TCP10-3	chr6:167825862-167825976	ucscGeneNc_uc003qvy_1

No data

Variant related genes	Relation type
ENSG00000101166	chromatin interactions

Extended variants
information (count: 1048 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:1048 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6455553	chr6:167811764-167811765	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
2	rs191871057	chr6:167811770-167811771	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
3	rs57012340	chr6:167811782-167811783	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
4	rs115750280	chr6:167811787-167811788	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
5	rs146728318	chr6:167811796-167811797	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
6	rs182900056	chr6:167811805-167811806	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
7	rs577407683	chr6:167811838-167811839	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
8	rs536430970	chr6:167811848-167811849	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
9	rs548120573	chr6:167811849-167811850	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
10	rs538389766	chr6:167811886-167811887	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
11	rs543325655	chr6:167811893-167811894	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
12	rs140316831	chr6:167811990-167811991	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
13	rs6933720	chr6:167811993-167811994	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs558622967	chr6:167812005-167812006	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
15	rs144943173	chr6:167812014-167812015	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
16	rs534330818	chr6:167812041-167812042	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
17	rs149042511	chr6:167812047-167812048	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
18	rs574818845	chr6:167812051-167812052	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
19	rs9364485	chr6:167812082-167812083	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs561456878	chr6:167812091-167812092	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
21	rs188007892	chr6:167812102-167812103	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
22	rs77279509	chr6:167812103-167812104	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
23	rs545939583	chr6:167812128-167812129	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
24	rs564590431	chr6:167812160-167812161	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
25	rs561050991	chr6:167812161-167812162	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
26	rs9364936	chr6:167812167-167812168	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs377552102	chr6:167812195-167812196	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
28	rs547046949	chr6:167812200-167812201	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
29	rs75909861	chr6:167812229-167812230	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
30	rs143334317	chr6:167812243-167812244	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
31	rs548362481	chr6:167812272-167812273	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
32	rs192376965	chr6:167812296-167812297	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
33	rs35065591	chr6:167812304-167812305	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
34	rs116577516	chr6:167812309-167812310	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
35	rs147102949	chr6:167812350-167812351	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
36	rs570233024	chr6:167812381-167812382	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
37	rs73031247	chr6:167812424-167812425	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs184334700	chr6:167812430-167812431	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
39	rs79142728	chr6:167812495-167812496	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
40	rs4709176	chr6:167812498-167812499	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs557646149	chr6:167812555-167812556	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
42	rs138476163	chr6:167812576-167812577	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
43	rs57490082	chr6:167812577-167812578	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs558264237	chr6:167812591-167812592	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
45	rs189476437	chr6:167812592-167812593	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
46	rs532054597	chr6:167812610-167812611	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
47	rs9346742	chr6:167812611-167812612	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs192382974	chr6:167812623-167812624	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
49	rs184680194	chr6:167812659-167812660	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
50	rs562707102	chr6:167812683-167812684	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	19435819	CNVD
Developmental delay	21147756	CNVD
Ovarian cancer	21720365	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute myeloid leukemia	19651601	CNVD
Sudden cardiac death	19188705	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167807600-167814400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:167809200-167812600	Enhancers	Liver	Liver
3	chr6:167809200-167812800	Enhancers	Fetal Intestine Small	intestine
4	chr6:167809400-167811800	Enhancers	Stomach Mucosa	stomach
5	chr6:167809400-167812800	Enhancers	Fetal Intestine Large	intestine
6	chr6:167810400-167811800	Enhancers	Spleen	Spleen
7	chr6:167810400-167814800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:167810600-167811800	Weak transcription	Pancreas	Pancrea
9	chr6:167811000-167811800	Weak transcription	Lung	lung
10	chr6:167811200-167812200	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:167811200-167812800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:167811600-167812400	Flanking Active TSS	HepG2	liver
13	chr6:167811800-167812000	Enhancers	Pancreas	Pancrea
14	chr6:167811800-167812600	Weak transcription	Spleen	Spleen
15	chr6:167812000-167812200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:167812000-167812200	Weak transcription	Pancreas	Pancrea
17	chr6:167812400-167813200	Enhancers	HepG2	liver
18	chr6:167812600-167812800	Enhancers	Spleen	Spleen
19	chr6:167812800-167814200	Weak transcription	Fetal Intestine Large	intestine
20	chr6:167812800-167814600	Weak transcription	Fetal Intestine Small	intestine
21	chr6:167812800-167815200	Weak transcription	Spleen	Spleen
22	chr6:167813600-167815400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:167814200-167815200	Enhancers	HepG2	liver
24	chr6:167814200-167816000	Enhancers	Fetal Intestine Large	intestine
25	chr6:167814400-167814600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:167814600-167815000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:167814600-167815800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:167814600-167816000	Enhancers	Fetal Intestine Small	intestine
29	chr6:167814800-167815800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr6:167815000-167815600	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr6:167815000-167816000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:167815000-167817400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:167815200-167815400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:167815200-167815400	Enhancers	Spleen	Spleen
35	chr6:167815200-167815400	Flanking Active TSS	HepG2	liver
36	chr6:167815200-167815600	Enhancers	Colonic Mucosa	Colon
37	chr6:167815200-167815800	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr6:167815200-167816000	Enhancers	H1 Cell Line	embryonic stem cell
39	chr6:167815200-167816000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
40	chr6:167815400-167816000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:167815400-167816200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:167815400-167820800	Bivalent Enhancer	HepG2	liver
43	chr6:167815600-167816000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:167815600-167816000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
45	chr6:167815800-167816200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:167815800-167820200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:167816000-167820400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr6:167816000-167820800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:167816200-167817400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:167817400-167817800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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