Variant report

Variant	nsv887438
Chromosome Location	chr7:6652740-6709600
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1533)
CpG islands
(count:3235)
Chromatin interactive
region (count:106)
LncRNA
region (count:15)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1533 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr7:6680032-6680221	K562	blood:	n/a	n/a
2	ATF1	chr7:6652571-6652812	K562	blood:	n/a	n/a
3	ATF2	chr7:6676670-6676974	GM12878	blood:	n/a	n/a
4	ATF3	chr7:6676663-6677108	GM12878	blood:	n/a	n/a
5	ATF3	chr7:6676729-6677016	HepG2	liver:	n/a	n/a
6	ATF3	chr7:6676775-6677020	GM12878	blood:	n/a	n/a
7	ATF3	chr7:6679904-6680092	K562	blood:	n/a	n/a
8	ATF3	chr7:6676764-6677038	K562	blood:	n/a	n/a
9	BACH1	chr7:6676413-6677735	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr7:6677373-6677430	K562	blood:	n/a	n/a
11	BACH1	chr7:6676690-6676978	K562	blood:	n/a	n/a
12	BACH1	chr7:6703886-6703996	H1-hESC	embryonic stem cell:	n/a	n/a
13	BATF	chr7:6679547-6679737	GM12878	blood:	n/a	n/a
14	BATF	chr7:6659295-6659530	GM12878	blood:	n/a	n/a
15	BCL3	chr7:6693791-6694049	GM12878	blood:	n/a	n/a
16	BCL3	chr7:6662021-6662558	GM12878	blood:	n/a	chr7:6662039-6662052 chr7:6662045-6662058 chr7:6662050-6662059 chr7:6662047-6662056 chr7:6662040-6662053 chr7:6662044-6662053 chr7:6662036-6662049
17	BCL3	chr7:6693271-6693492	GM12878	blood:	n/a	n/a
18	BCL3	chr7:6662073-6662402	GM12878	blood:	n/a	n/a
19	BCL3	chr7:6676620-6677051	GM12878	blood:	n/a	chr7:6676897-6676906
20	BCLAF1	chr7:6676612-6677075	GM12878	blood:	n/a	chr7:6676897-6676906
21	BHLHE40	chr7:6698832-6699007	K562	blood:	n/a	n/a
22	BHLHE40	chr7:6676405-6676427	K562	blood:	n/a	n/a
23	BHLHE40	chr7:6679587-6679733	GM12878	blood:	n/a	n/a
24	BHLHE40	chr7:6676643-6677601	GM12878	blood:	n/a	chr7:6677407-6677423
25	BHLHE40	chr7:6676722-6677023	K562	blood:	n/a	n/a
26	BHLHE40	chr7:6685656-6685802	K562	blood:	n/a	n/a
27	BHLHE40	chr7:6677264-6677647	K562	blood:	n/a	chr7:6677407-6677423
28	BHLHE40	chr7:6663730-6663805	GM12878	blood:	n/a	n/a
29	BHLHE40	chr7:6698826-6699225	HepG2	liver:	n/a	n/a
30	BHLHE40	chr7:6679828-6680319	K562	blood:	n/a	n/a
31	BRCA1	chr7:6698867-6699045	H1-hESC	embryonic stem cell:	n/a	n/a
32	BRCA1	chr7:6652546-6652789	Hela-S3	cervix:	n/a	n/a
33	CBX3	chr7:6679531-6680589	K562	blood:	n/a	n/a
34	CBX3	chr7:6679776-6680216	K562	blood:	n/a	n/a
35	CBX3	chr7:6677286-6677693	K562	blood:	n/a	n/a
36	CBX3	chr7:6676642-6676930	K562	blood:	n/a	n/a
37	CCNT2	chr7:6676308-6677623	K562	blood:	n/a	n/a
38	CCNT2	chr7:6694042-6694139	K562	blood:	n/a	n/a
39	CEBPB	chr7:6699055-6699407	HepG2	liver:	n/a	chr7:6699226-6699237
40	CEBPB	chr7:6658239-6658266	A549	lung:	n/a	n/a
41	CEBPB	chr7:6698891-6699407	HepG2	liver:	n/a	chr7:6699226-6699237
42	CEBPB	chr7:6699039-6699442	ECC-1	luminal epithelium:	n/a	chr7:6699226-6699237
43	CEBPB	chr7:6659301-6659458	A549	lung:	n/a	n/a
44	CEBPB	chr7:6679421-6679645	A549	lung:	n/a	n/a
45	CEBPB	chr7:6698987-6699470	MCF-7	breast:	n/a	chr7:6699226-6699237
46	CEBPB	chr7:6699089-6699426	H1-hESC	embryonic stem cell:	n/a	chr7:6699226-6699237
47	CEBPB	chr7:6659050-6659078	A549	lung:	n/a	n/a
48	CEBPB	chr7:6698995-6699540	ECC-1	luminal epithelium:	n/a	chr7:6699226-6699237
49	CEBPB	chr7:6655726-6655804	H1-hESC	embryonic stem cell:	n/a	n/a
50	CEBPB	chr7:6661217-6661676	HepG2	liver:	n/a	n/a

(count:3235 , 50 per page) page: 1 2 3 4 5 6 7 ... 65

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:6677494-6677544	AG04449	skin:	fetal
2	chr7:6662685-6662735	HAEpiC	amniotic membrane:	n/a
3	chr7:6677494-6677544	AG04449	skin:	fetal
4	chr7:6662685-6662735	HAEpiC	amniotic membrane:	n/a
5	chr7:6654422-6654472	PrEC	prostate:	n/a
6	chr7:6676832-6676882	Jurkat	blood:	n/a
7	chr7:6676630-6676680	HCF	heart:	n/a
8	chr7:6702706-6702756	HPAEpiC	pulmonary alveolar:	n/a
9	chr7:6703708-6703758	HepG2	liver:	n/a
10	chr7:6680085-6680135	BJ	skin:	n/a
11	chr7:6655834-6655884	HCF	heart:	n/a
12	chr7:6695121-6695171	HNPCEpiC	eye:	n/a
13	chr7:6655711-6655761	ovcar-3	ovarian:	n/a
14	chr7:6707858-6707908	T-47D	breast:	n/a
15	chr7:6677265-6677315	BJ	skin:	n/a
16	chr7:6702706-6702756	HRPEpiC	eye:	n/a
17	chr7:6694978-6695028	T-47D	breast:	n/a
18	chr7:6653510-6653560	HPAEpiC	pulmonary alveolar:	n/a
19	chr7:6676784-6676834	AG10803	skin:	n/a
20	chr7:6677265-6677315	ovcar-3	ovarian:	n/a
21	chr7:6707858-6707908	NB4	blood:	n/a
22	chr7:6654422-6654472	HCM	heart:	n/a
23	chr7:6662789-6662839	GM12891	blood:	n/a
24	chr7:6680085-6680135	MCF-7	breast:	n/a
25	chr7:6662685-6662735	HCPEpiC	choroid plexus:	n/a
26	chr7:6655120-6655170	SK-N-MC	brain:	n/a
27	chr7:6676168-6676218	HCT-116	colon:	n/a
28	chr7:6693030-6693080	RPTEC	kidney:	n/a
29	chr7:6662685-6662735	HEEpiC	esophagus:	n/a
30	chr7:6661804-6661854	BE2_C	brain:	n/a
31	chr7:6692873-6692923	RPTEC	kidney:	n/a
32	chr7:6654880-6654930	HEEpiC	esophagus:	n/a
33	chr7:6655120-6655170	GM12891	blood:	n/a
34	chr7:6696120-6696170	HepG2	liver:	n/a
35	chr7:6695092-6695142	AG09319	gingival:	n/a
36	chr7:6696120-6696170	IMR90	lung:	fetal
37	chr7:6693030-6693080	HCT-116	colon:	n/a
38	chr7:6654880-6654930	LNCaP	prostate:	n/a
39	chr7:6677494-6677544	MCF-7	breast:	n/a
40	chr7:6653510-6653560	BE2_C	brain:	n/a
41	chr7:6676630-6676680	GM06990	blood:	n/a
42	chr7:6676001-6676051	HRPEpiC	eye:	n/a
43	chr7:6694373-6694423	BJ	skin:	n/a
44	chr7:6691949-6691999	HRCEpiC	kidney:	n/a
45	chr7:6662329-6662379	HRPEpiC	eye:	n/a
46	chr7:6702706-6702756	PANC-1	pancreas:	n/a
47	chr7:6661876-6661926	GM12892	blood:	n/a
48	chr7:6696120-6696170	NB4	blood:	n/a
49	chr7:6689218-6689268	GM12892	blood:	n/a
50	chr7:6694735-6694785	GM12892	blood:	n/a

(count:106 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr7:6654514..6658630-chr7:6675114..6678876,5	MCF-7	breast:
2	chr7:6661077..6664696-chr7:6667812..6669863,3	MCF-7	breast:
3	chr7:6637338..6640081-chr7:6675258..6678566,5	MCF-7	breast:
4	chr7:6698245..6699981-chr7:6737287..6739036,2	MCF-7	breast:
5	chr7:6628726..6630315-chr7:6654459..6656349,2	MCF-7	breast:
6	chr7:6685863..6688294-chr7:6688920..6690681,2	MCF-7	breast:
7	chr7:6641654..6643210-chr7:6674814..6676517,2	MCF-7	breast:
8	chr7:6682551..6684434-chr7:6694308..6696080,2	MCF-7	breast:
9	chr7:6698325..6700210-chr7:6703299..6704869,2	MCF-7	breast:
10	chr7:6694849..6698438-chr7:6699530..6702045,3	K562	blood:
11	chr7:6669640..6671625-chr7:6687041..6689974,2	MCF-7	breast:
12	chr7:6685863..6688294-chr7:6688920..6690681,2	MCF-7	breast:
13	chr7:6681267..6684799-chr7:6697447..6700610,3	MCF-7	breast:
14	chr17:41465185..41465700-chr7:6676633..6677215,2	Hela-S3	cervix:
15	chr7:6681243..6682856-chr7:6746246..6748831,2	K562	blood:
16	chr7:6522385..6525546-chr7:6675389..6679461,5	MCF-7	breast:
17	chr7:6661901..6664151-chr7:6670252..6671986,3	MCF-7	breast:
18	chr7:6541950..6543739-chr7:6677071..6679453,2	K562	blood:
19	chr7:6696313..6698315-chr7:6745284..6746997,2	K562	blood:
20	chr7:6645718..6648142-chr7:6667020..6668593,2	K562	blood:
21	chr7:6676518..6678447-chr7:6694438..6696514,2	MCF-7	breast:
22	chr7:6674759..6677679-chr7:6692100..6694240,3	MCF-7	breast:
23	chr7:6683480..6686518-chr7:6689197..6691289,3	MCF-7	breast:
24	chr7:6660564..6662217-chr7:6683757..6686361,2	MCF-7	breast:
25	chr7:6652934..6655791-chr7:6675915..6678392,2	MCF-7	breast:
26	chr7:6652934..6655791-chr7:6675915..6678392,2	MCF-7	breast:
27	chr7:6641830..6642345-chr7:6698974..6699620,2	MCF-7	breast:
28	chr12:56510812..56512603-chr7:6677169..6678802,2	MCF-7	breast:
29	chr7:6649329..6651399-chr7:6652543..6654507,2	MCF-7	breast:
30	chr10:104155341..104155841-chr7:6676464..6677005,2	Hela-S3	cervix:
31	chr7:6675427..6681659-chr7:6684293..6688490,10	MCF-7	breast:
32	chr7:6680149..6683134-chr7:6689202..6690780,2	K562	blood:
33	chr7:6614762..6617092-chr7:6682142..6684739,2	K562	blood:
34	chr7:6683480..6686518-chr7:6689197..6691289,3	MCF-7	breast:
35	chr7:6675369..6676975-chr7:6698332..6700533,2	MCF-7	breast:
36	chr7:6674209..6679608-chr7:6682918..6689628,9	K562	blood:
37	chr7:6700299..6703221-chr7:6744305..6746051,2	MCF-7	breast:
38	chr7:6676568..6678542-chr7:6699146..6700802,2	MCF-7	breast:
39	chr7:6615703..6619364-chr7:6676501..6679314,4	K562	blood:
40	chr7:6674043..6676883-chr7:6677067..6680291,5	K562	blood:
41	chr7:6680998..6682837-chr7:6692889..6695214,2	MCF-7	breast:
42	chr7:6682112..6684474-chr7:6686272..6690280,3	MCF-7	breast:
43	chr7:6668677..6671566-chr7:6683216..6685538,2	MCF-7	breast:
44	chr7:6628238..6630542-chr7:6653702..6656593,2	MCF-7	breast:
45	chr7:6687023..6688997-chr7:6745010..6747605,2	K562	blood:
46	chr7:6668305..6670110-chr7:6679585..6681865,2	MCF-7	breast:
47	chr7:6688371..6689911-chr7:6696909..6698726,2	K562	blood:
48	chr7:6628457..6631267-chr7:6660090..6662894,2	K562	blood:
49	chr7:6666562..6671587-chr7:6674314..6680724,9	MCF-7	breast:
50	chr7:6694849..6698438-chr7:6699530..6702045,3	K562	blood:

(count:15 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC073343.1-1	chr7:6704675-6705152	NONHSAT119056
2	lnc-ZNF853-2	chr7:6679361-6680635	ucscGeneNc_uc003sqr_1
3	lnc-AC073343.1-2	chr7:6694495-6696063	ENSG00000260054.1
4	lnc-AC073343.1-1	chr7:6704675-6705152	ENSG00000228010.1
5	lnc-AC073343.1-1	chr7:6703605-6703674	ENSG00000228010.1
6	lnc-AC073343.1-1	chr7:6704675-6704739	NONHSAT119055
7	lnc-ZNF853-2	chr7:6670130-6670199	ucscGeneNc_uc003sqr_1
8	lnc-AC073343.1-1	chr7:6704675-6704739	ENSG00000228010.1
9	lnc-ZNF12-1	chr7:6708412-6708689	expReg_chr7_763_-
10	lnc-AC073343.1-1	chr7:6703605-6703674	NONHSAT119056
11	lnc-AC073343.1-1	chr7:6704675-6704739	ENSG00000228010.1
12	lnc-ZNF853-2	chr7:6671200-6671264	ucscGeneNc_uc003sqr_1
13	lnc-AC073343.1-1	chr7:6703605-6703674	ENSG00000228010.1
14	lnc-AC073343.1-1	chr7:6703605-6703674	NONHSAT119055
15	lnc-AC073343.1-1	chr7:6703605-6703674	ENSG00000228010.1

No data

Variant related genes	Relation type
ZNF853	TF binding region
ENSG00000198580	TF binding region
ZNF316	TF binding region
ENSG00000260054	TF binding region
ENSG00000228010	TF binding region
ZNF853	CpG island
ENSG00000198580	CpG island
ZNF316	CpG island
ENSG00000260054	CpG island
ENSG00000228010	CpG island
ENSG00000198580	chromatin interactions
ENSG00000228010	chromatin interactions
ENSG00000164631	chromatin interactions
ENSG00000188825	chromatin interactions
ENSG00000136247	chromatin interactions
ENSG00000269781	chromatin interactions
ENSG00000187953	chromatin interactions
ENSG00000260054	chromatin interactions
ENSG00000136240	chromatin interactions
ENSG00000139641	chromatin interactions
ENSG00000077150	chromatin interactions
ENSG00000232581	chromatin interactions
ENSG00000135482	chromatin interactions
ENSG00000215045	chromatin interactions
ENSG00000146576	chromatin interactions
ENSG00000236609	chromatin interactions
ENSG00000205903	chromatin interactions

Extended variants
information (count: 2580 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:2580 , 50 per page) page: 1 2 3 4 5 6 7 ... 52

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6973331	chr7:6652740-6652741	Weak transcription Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs566973539	chr7:6652749-6652750	Weak transcription Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs551966954	chr7:6652779-6652780	Weak transcription Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs10688394	chr7:6652794-6652795	Weak transcription Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs386409448	chr7:6652795-6652796	Weak transcription Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs397765815	chr7:6652796-6652797	Weak transcription Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs377243546	chr7:6652797-6652798	Weak transcription Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs576309335	chr7:6652798-6652799	Weak transcription Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs71010906	chr7:6652799-6652800	Weak transcription Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs375302475	chr7:6652800-6652801	Weak transcription Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs564240781	chr7:6652840-6652841	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs535174746	chr7:6652842-6652843	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs532589025	chr7:6652861-6652862	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs577473677	chr7:6652867-6652868	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs544891843	chr7:6652868-6652869	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs556882643	chr7:6652891-6652892	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs111986840	chr7:6652948-6652949	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs569478291	chr7:6652955-6652956	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs376683278	chr7:6652963-6652964	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs199789070	chr7:6652980-6652981	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs369365394	chr7:6652982-6652983	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs202079985	chr7:6652984-6652985	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs200137334	chr7:6652986-6652987	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs373334536	chr7:6652987-6652988	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs61426242	chr7:6652988-6652989	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs60373465	chr7:6652989-6652990	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs61598495	chr7:6652990-6652991	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs67994262	chr7:6652991-6652992	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs371484908	chr7:6652996-6652997	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs375830338	chr7:6652998-6652999	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs370104719	chr7:6653004-6653005	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs528194393	chr7:6653022-6653023	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs191036583	chr7:6653024-6653025	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs34882175	chr7:6653036-6653037	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs181470934	chr7:6653107-6653108	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs551275622	chr7:6653112-6653113	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs569607878	chr7:6653117-6653118	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs530202328	chr7:6653142-6653143	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs548789279	chr7:6653143-6653144	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs148617551	chr7:6653180-6653181	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs534306400	chr7:6653206-6653207	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs537214763	chr7:6653251-6653252	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs373022399	chr7:6653260-6653261	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs559023804	chr7:6653269-6653270	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs570507093	chr7:6653281-6653282	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs142042959	chr7:6653288-6653289	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs186539006	chr7:6653300-6653301	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs575184838	chr7:6653379-6653380	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs548913327	chr7:6653414-6653415	Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs566844355	chr7:6653462-6653463	Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Lynch syndrome	22585707	CNVD
Follicular lymphoma	20505157	CNVD
Breast cancer	16397240	CNVD
Raine Syndrome	17924334	CNVD
Diffuse large b-cell lymphoma	21266526	CNVD
Melanoma	18172304	CNVD
Sudden cardiac death	19188705	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Glioma	18556773	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Bladder cancer	21909424	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	21045282	CNVD
Disorders of sex development	21048976	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Acute myeloid leukemia	21251322	CNVD
Glioblastoma multiforme	21525872	CNVD
Autism	20685689	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Ovarian cancer	21781307	CNVD

Chromatin state (count:2623 , 50 per page) page: 1 2 3 4 5 6 7 ... 53

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6636000-6654600	Weak transcription	Psoas Muscle	Psoas
2	chr7:6637800-6653000	Weak transcription	HMEC	breast
3	chr7:6637800-6653200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:6640600-6653400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:6642000-6654400	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:6642000-6654400	Weak transcription	Fetal Brain Male	brain
7	chr7:6642400-6654600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:6642600-6653600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:6642600-6654400	Weak transcription	Fetal Kidney	kidney
10	chr7:6642600-6654400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:6642600-6654600	Weak transcription	Brain Angular Gyrus	brain
12	chr7:6642800-6654600	Weak transcription	HSMM	muscle
13	chr7:6643600-6653400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:6644200-6653600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:6644200-6653600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:6644400-6654400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:6644400-6654400	Weak transcription	Brain Substantia Nigra	brain
18	chr7:6644600-6653600	Weak transcription	HepG2	liver
19	chr7:6644600-6654400	Weak transcription	Fetal Lung	lung
20	chr7:6644800-6654400	Weak transcription	Ovary	ovary
21	chr7:6645200-6654200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr7:6645800-6654200	Weak transcription	Primary B cells from cord blood	blood
23	chr7:6646200-6654400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr7:6646600-6653400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:6646600-6654400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr7:6647400-6654400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:6648000-6654400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr7:6648200-6654200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr7:6648200-6654400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:6648200-6654400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr7:6648200-6654400	Weak transcription	Brain Hippocampus Middle	brain
32	chr7:6648200-6654600	Weak transcription	Left Ventricle	heart
33	chr7:6648400-6653000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr7:6648400-6653200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr7:6648400-6653200	Weak transcription	NHLF	lung
36	chr7:6648400-6653400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr7:6648400-6654400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr7:6648400-6654600	Weak transcription	Primary T cells from cord blood	blood
39	chr7:6648400-6654600	Weak transcription	Pancreas	Pancrea
40	chr7:6648400-6654600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr7:6648600-6654200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:6648600-6654600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr7:6648600-6654600	Weak transcription	Esophagus	oesophagus
44	chr7:6648800-6653200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr7:6648800-6653400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr7:6648800-6653600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:6648800-6653600	Weak transcription	Small Intestine	intestine
48	chr7:6648800-6654000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr7:6648800-6654200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr7:6648800-6654400	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links