Variant report

Variant	nsv887692
Chromosome Location	chr7:13641674-13718969
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARL4A-1	chr7:13676271-13676357	XLOC_005988
2	lnc-ARL4A-7	chr7:13642796-13642882	NONHSAT119248
3	lnc-ARL4A-7	chr7:13710212-13710299	NONHSAT119248

Extended variants
information (count: 1803 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:1803 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569197734	chr7:13641806-13641807	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs367809108	chr7:13641916-13641917	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs554993834	chr7:13641935-13641936	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs620155	chr7:13641988-13641989	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs575041566	chr7:13642069-13642070	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs184069785	chr7:13642072-13642073	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs142359227	chr7:13642095-13642096	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs561639377	chr7:13642134-13642135	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs148686519	chr7:13642143-13642144	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs545958501	chr7:13642187-13642188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs144546188	chr7:13642195-13642196	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs147456725	chr7:13642208-13642209	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs541792263	chr7:13642240-13642241	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs187573181	chr7:13642293-13642294	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs370856840	chr7:13642319-13642320	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs190671625	chr7:13642323-13642324	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs547195978	chr7:13642386-13642387	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs139915167	chr7:13642392-13642393	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs182878214	chr7:13642406-13642407	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs114316170	chr7:13642424-13642425	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs145408413	chr7:13642445-13642446	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs569314575	chr7:13642487-13642488	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs569800711	chr7:13642501-13642502	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs151064570	chr7:13642509-13642510	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs548533148	chr7:13642580-13642581	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs373510177	chr7:13642681-13642682	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs28693928	chr7:13642694-13642695	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs535178716	chr7:13642704-13642705	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs187114173	chr7:13642717-13642718	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs534453773	chr7:13642722-13642723	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs554493619	chr7:13642747-13642748	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs571101552	chr7:13642773-13642774	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs192884355	chr7:13642799-13642800	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
34	rs111911372	chr7:13642816-13642817	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
35	rs540014207	chr7:13642833-13642834	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
36	rs377274792	chr7:13642852-13642853	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
37	rs184616344	chr7:13642856-13642857	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
38	rs541615510	chr7:13642915-13642916	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs79469936	chr7:13642928-13642929	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs187949148	chr7:13643002-13643003	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs572021119	chr7:13643032-13643033	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs192144276	chr7:13643045-13643046	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs116825217	chr7:13643052-13643053	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs75460524	chr7:13643071-13643072	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs543199569	chr7:13643107-13643108	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs185722992	chr7:13643226-13643227	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs531781944	chr7:13643243-13643244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs199789687	chr7:13643246-13643247	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs76194533	chr7:13643254-13643255	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs573671831	chr7:13643296-13643297	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Medulloblastoma	17653508	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Myelofibrosis	22110671	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Cancer	17440070	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13641800-13644000	Enhancers	Fetal Brain Male	brain
2	chr7:13642200-13644600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:13642800-13644400	Enhancers	NHEK	skin
4	chr7:13643000-13644400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:13643000-13644800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:13643000-13644800	Enhancers	HMEC	breast
7	chr7:13647200-13647600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr7:13647200-13647600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:13647400-13647600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:13660200-13660600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr7:13660400-13660600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:13661000-13663000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:13662000-13663200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:13662400-13663200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:13662600-13663000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:13663000-13664200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:13663200-13663600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:13663200-13663600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:13663600-13664000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:13663600-13664200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:13667000-13669000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:13667800-13668800	Enhancers	Osteobl	bone
23	chr7:13668000-13668600	Enhancers	HMEC	breast
24	chr7:13668000-13668800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr7:13668000-13668800	Enhancers	NH-A	brain
26	chr7:13668000-13669000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr7:13668200-13668600	Enhancers	HSMM	muscle
28	chr7:13668200-13669000	Enhancers	NHDF-Ad	bronchial
29	chr7:13668400-13668800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:13669000-13681400	Weak transcription	NHDF-Ad	bronchial
31	chr7:13679000-13679200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:13679000-13679400	Enhancers	Fetal Muscle Leg	muscle
33	chr7:13679000-13679400	Enhancers	Psoas Muscle	Psoas
34	chr7:13679000-13679400	Enhancers	HSMMtube	muscle
35	chr7:13679200-13679400	Enhancers	Fetal Lung	lung
36	chr7:13679600-13681400	Weak transcription	Fetal Lung	lung
37	chr7:13681000-13681800	Enhancers	Muscle Satellite Cultured Cells	--
38	chr7:13681400-13681600	Enhancers	NHDF-Ad	bronchial
39	chr7:13681400-13681800	Enhancers	Fetal Lung	lung
40	chr7:13681400-13682000	Enhancers	Osteobl	bone
41	chr7:13681600-13682400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr7:13687800-13688200	Enhancers	H9 Cell Line	embryonic stem cell
43	chr7:13687800-13688600	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr7:13688000-13688400	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr7:13688000-13688400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr7:13688000-13688600	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr7:13688200-13688600	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr7:13688600-13697600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr7:13696200-13697800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr7:13696200-13698000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links