Variant report

Variant	nsv887693
Chromosome Location	chr7:13673538-13718969
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARL4A-1	chr7:13676271-13676357	XLOC_005988
2	lnc-ARL4A-7	chr7:13710212-13710299	NONHSAT119248

Extended variants
information (count: 1238 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:1238 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10215999	chr7:13673538-13673539	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs551101564	chr7:13673585-13673586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs186154222	chr7:13673597-13673598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs540828403	chr7:13673635-13673636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs567756551	chr7:13673640-13673641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs536682196	chr7:13673682-13673683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs568844193	chr7:13673687-13673688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs145996302	chr7:13673719-13673720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs965349	chr7:13673727-13673728	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs574281883	chr7:13673744-13673745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs189493273	chr7:13673768-13673769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs180823168	chr7:13673779-13673780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs79388127	chr7:13673804-13673805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs545419510	chr7:13673812-13673813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs187662893	chr7:13673858-13673859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs139942261	chr7:13673892-13673893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs190801447	chr7:13673906-13673907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs561477626	chr7:13673925-13673926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs530272546	chr7:13673927-13673928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs183120071	chr7:13673928-13673929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs560161706	chr7:13673947-13673948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs532091238	chr7:13673967-13673968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs142193167	chr7:13673998-13673999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs568508229	chr7:13674102-13674103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs531539183	chr7:13674123-13674124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs548040166	chr7:13674126-13674127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs10239445	chr7:13674145-13674146	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs150802837	chr7:13674167-13674168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs117407083	chr7:13674173-13674174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs10269275	chr7:13674179-13674180	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs370845216	chr7:13674190-13674191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs538754083	chr7:13674210-13674211	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs373158482	chr7:13674232-13674233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs559034505	chr7:13674266-13674267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs113442138	chr7:13674292-13674293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs544927127	chr7:13674324-13674325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs10279512	chr7:13674355-13674356	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs185954831	chr7:13674358-13674359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs74441133	chr7:13674402-13674403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs560457035	chr7:13674413-13674414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs544469925	chr7:13674464-13674465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs190316026	chr7:13674499-13674500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs115489723	chr7:13674558-13674559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs531160680	chr7:13674569-13674570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs548099769	chr7:13674598-13674599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs567980363	chr7:13674599-13674600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs139240361	chr7:13674602-13674603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs12674053	chr7:13674646-13674647	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs573378432	chr7:13674655-13674656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs542236280	chr7:13674680-13674681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Medulloblastoma	17653508	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Myelofibrosis	22110671	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Cancer	17440070	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13669000-13681400	Weak transcription	NHDF-Ad	bronchial
2	chr7:13679000-13679200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:13679000-13679400	Enhancers	Fetal Muscle Leg	muscle
4	chr7:13679000-13679400	Enhancers	Psoas Muscle	Psoas
5	chr7:13679000-13679400	Enhancers	HSMMtube	muscle
6	chr7:13679200-13679400	Enhancers	Fetal Lung	lung
7	chr7:13679600-13681400	Weak transcription	Fetal Lung	lung
8	chr7:13681000-13681800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:13681400-13681600	Enhancers	NHDF-Ad	bronchial
10	chr7:13681400-13681800	Enhancers	Fetal Lung	lung
11	chr7:13681400-13682000	Enhancers	Osteobl	bone
12	chr7:13681600-13682400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:13687800-13688200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr7:13687800-13688600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr7:13688000-13688400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr7:13688000-13688400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr7:13688000-13688600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr7:13688200-13688600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:13688600-13697600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:13696200-13697800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:13696200-13698000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:13697600-13698200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
23	chr7:13712600-13714800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:13713000-13713200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:13713000-13713200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:13713200-13717600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:13713200-13719000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr7:13717200-13718200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr7:13717600-13718000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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