Variant report

Variant	nsv887694
Chromosome Location	chr7:13680696-13718969
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARL4A-7	chr7:13710212-13710299	NONHSAT119248

Extended variants
information (count: 897 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:897 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6955325	chr7:13680696-13680697	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs548342888	chr7:13680739-13680740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs374762853	chr7:13680744-13680745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs6955852	chr7:13680745-13680746	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs547637370	chr7:13680751-13680752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs570734436	chr7:13680756-13680757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs145370727	chr7:13680796-13680797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs149215297	chr7:13680809-13680810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs569696016	chr7:13680827-13680828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs535524989	chr7:13680893-13680894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs555076042	chr7:13680898-13680899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs77926756	chr7:13681118-13681119	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs541357028	chr7:13681121-13681122	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs143416608	chr7:13681131-13681132	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs577988900	chr7:13681144-13681145	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs543672208	chr7:13681150-13681151	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs17167301	chr7:13681154-13681155	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs576503135	chr7:13681176-13681177	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs182285494	chr7:13681177-13681178	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs386710533	chr7:13681241-13681242	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs146408192	chr7:13681254-13681255	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs140808545	chr7:13681286-13681287	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs547701829	chr7:13681301-13681302	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs561236520	chr7:13681356-13681357	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs564466530	chr7:13681371-13681372	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs533441126	chr7:13681379-13681380	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs550002382	chr7:13681381-13681382	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs570191024	chr7:13681387-13681388	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs535199433	chr7:13681408-13681409	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs549032480	chr7:13681421-13681422	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs574344822	chr7:13681444-13681445	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs565553014	chr7:13681495-13681496	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs10499434	chr7:13681514-13681515	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs369301248	chr7:13681553-13681554	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs17589432	chr7:13681581-13681582	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs187999284	chr7:13681631-13681632	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs562922622	chr7:13681647-13681648	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs112022811	chr7:13681660-13681661	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs10499435	chr7:13681671-13681672	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs573733472	chr7:13681677-13681678	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs552337395	chr7:13681681-13681682	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs541981275	chr7:13681687-13681688	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs191910747	chr7:13681691-13681692	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs183944078	chr7:13681711-13681712	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs565949045	chr7:13681732-13681733	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs531840315	chr7:13681749-13681750	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs114490654	chr7:13681753-13681754	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs533455284	chr7:13681764-13681765	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs550402640	chr7:13681829-13681830	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs17589467	chr7:13681848-13681849	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Medulloblastoma	17653508	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Myelofibrosis	22110671	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Cancer	17440070	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13669000-13681400	Weak transcription	NHDF-Ad	bronchial
2	chr7:13679600-13681400	Weak transcription	Fetal Lung	lung
3	chr7:13681000-13681800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:13681400-13681600	Enhancers	NHDF-Ad	bronchial
5	chr7:13681400-13681800	Enhancers	Fetal Lung	lung
6	chr7:13681400-13682000	Enhancers	Osteobl	bone
7	chr7:13681600-13682400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:13687800-13688200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr7:13687800-13688600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:13688000-13688400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:13688000-13688400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:13688000-13688600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:13688200-13688600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:13688600-13697600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:13696200-13697800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:13696200-13698000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:13697600-13698200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr7:13712600-13714800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:13713000-13713200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:13713000-13713200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:13713200-13717600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:13713200-13719000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:13717200-13718200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
24	chr7:13717600-13718000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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