Variant report

Variant	nsv887726
Chromosome Location	chr7:15242206-15351277
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:15344369..15345259-chr7:16109147..16109752,2	MCF-7	breast:
2	chr7:15344409..15345014-chr7:16111015..16111547,2	MCF-7	breast:
3	chr7:15344411..15345401-chr7:15760276..15761708,4	MCF-7	breast:
4	chr7:15262308..15264487-chr7:15270699..15272942,2	K562	blood:
5	chr7:15253710..15255246-chr7:15258463..15260182,2	K562	blood:
6	chr7:14757340..14758014-chr7:15344576..15345303,4	MCF-7	breast:
7	chr7:15262308..15264487-chr7:15270699..15272942,2	K562	blood:
8	chr7:15335615..15338376-chr7:15338605..15341131,2	MCF-7	breast:
9	chr7:15335615..15338376-chr7:15338605..15341131,2	MCF-7	breast:
10	chr7:15253710..15255246-chr7:15258463..15260182,2	K562	blood:
11	chr7:15344361..15344992-chr7:15760353..15761140,2	MCF-7	breast:

No data

Extended variants
information (count: 3887 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:3887 , 50 per page) page: 1 2 3 4 5 6 7 ... 78

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12538095	chr7:15242206-15242207	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs183471796	chr7:15242220-15242221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs188198981	chr7:15242255-15242256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs12699693	chr7:15242262-15242263	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs76678339	chr7:15242317-15242318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs143515241	chr7:15242333-15242334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs59985449	chr7:15242350-15242351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs541524813	chr7:15242399-15242400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs10256260	chr7:15242408-15242409	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs118060975	chr7:15242507-15242508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs540620630	chr7:15242512-15242513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs560861037	chr7:15242519-15242520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs562028298	chr7:15242548-15242549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs532819162	chr7:15242560-15242561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs527816988	chr7:15242562-15242563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs372087063	chr7:15242595-15242596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs75499429	chr7:15242604-15242605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs531888127	chr7:15242631-15242632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs375113793	chr7:15242672-15242673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs548672061	chr7:15242686-15242687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs369280502	chr7:15242691-15242692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs568416245	chr7:15242695-15242696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs534221279	chr7:15242699-15242700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs553848642	chr7:15242741-15242742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs570449623	chr7:15242774-15242775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs539327986	chr7:15242787-15242788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs555989466	chr7:15242811-15242812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs575825579	chr7:15242825-15242826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs541580458	chr7:15242861-15242862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs555440758	chr7:15242887-15242888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs548031469	chr7:15242918-15242919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs572015480	chr7:15242920-15242921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs546477189	chr7:15242928-15242929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs541035471	chr7:15242971-15242972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs563909437	chr7:15243062-15243063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs532883136	chr7:15243077-15243078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs201577491	chr7:15243082-15243083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs563136029	chr7:15243094-15243095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs555181936	chr7:15243116-15243117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs75098993	chr7:15243133-15243134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs10257224	chr7:15243136-15243137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs181086572	chr7:15243139-15243140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs527770422	chr7:15243142-15243143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs145915232	chr7:15243177-15243178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs570511243	chr7:15243180-15243181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs185569704	chr7:15243221-15243222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs113522259	chr7:15243235-15243236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs556046518	chr7:15243282-15243283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs189686662	chr7:15243297-15243298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs138935506	chr7:15243331-15243332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:154 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15238800-15249200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:15239000-15244200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:15244000-15244200	Active TSS	Fetal Lung	lung
4	chr7:15244200-15244400	Flanking Active TSS	Fetal Lung	lung
5	chr7:15244200-15244800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:15244400-15248800	Weak transcription	Fetal Lung	lung
7	chr7:15248800-15249600	Enhancers	Fetal Lung	lung
8	chr7:15249000-15249200	Active TSS	Ovary	ovary
9	chr7:15249000-15249600	Enhancers	Fetal Muscle Leg	muscle
10	chr7:15249000-15249800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:15249200-15249400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:15249200-15249400	Flanking Active TSS	Ovary	ovary
13	chr7:15249200-15249600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:15249200-15249800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:15249400-15260000	Weak transcription	Psoas Muscle	Psoas
16	chr7:15251000-15252400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:15251000-15252400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr7:15251600-15252600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:15251800-15252600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:15252000-15252400	Enhancers	Osteobl	bone
21	chr7:15252200-15253600	Enhancers	Liver	Liver
22	chr7:15253600-15264800	Weak transcription	Liver	Liver
23	chr7:15254200-15254400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:15254200-15254800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:15254400-15254600	Enhancers	Fetal Stomach	stomach
26	chr7:15254600-15255600	Weak transcription	Fetal Stomach	stomach
27	chr7:15254800-15256400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:15255000-15255200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:15255200-15256000	Enhancers	NHDF-Ad	bronchial
30	chr7:15255600-15256000	Enhancers	Fetal Lung	lung
31	chr7:15255600-15256000	Enhancers	Fetal Stomach	stomach
32	chr7:15255800-15260200	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr7:15256400-15257600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:15256600-15260200	Enhancers	Primary hematopoietic stem cells	blood
35	chr7:15256600-15261200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:15256800-15257000	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr7:15257000-15257800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr7:15257600-15258200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:15257800-15258000	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr7:15258000-15258800	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr7:15258200-15259200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr7:15258200-15260000	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr7:15258800-15259800	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr7:15259200-15259400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr7:15259200-15260200	Enhancers	HUVEC	blood vessel
46	chr7:15259400-15259600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr7:15259600-15259800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr7:15259800-15261200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr7:15260000-15260200	Enhancers	Psoas Muscle	Psoas
50	chr7:15260200-15260600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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