Variant report

Variant	nsv887730
Chromosome Location	chr7:15482111-15580078
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:15531844..15534427-chr7:15538603..15541203,2	K562	blood:
2	chr7:15543347..15544306-chr7:15760242..15761135,3	MCF-7	breast:
3	chr7:15531844..15534427-chr7:15538603..15541203,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MEOX2-5	chr7:15494576-15494813	NONHSAT119277

Extended variants
information (count: 3419 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:3419 , 50 per page) page: 1 2 3 4 5 6 7 ... 69

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12699717	chr7:15482111-15482112	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs188145509	chr7:15482121-15482122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs565865169	chr7:15482134-15482135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs149058214	chr7:15482138-15482139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs528207708	chr7:15482185-15482186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs548341611	chr7:15482234-15482235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs569926655	chr7:15482238-15482239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs181000879	chr7:15482244-15482245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs117590930	chr7:15482269-15482270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs114868101	chr7:15482282-15482283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs538653877	chr7:15482299-15482300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs12699718	chr7:15482334-15482335	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs572134752	chr7:15482346-15482347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs143108575	chr7:15482357-15482358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs186264840	chr7:15482403-15482404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs576232921	chr7:15482421-15482422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs543341904	chr7:15482424-15482425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs574648566	chr7:15482452-15482453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs532380404	chr7:15482464-15482465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs189731780	chr7:15482496-15482497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs117467531	chr7:15482497-15482498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs559338121	chr7:15482505-15482506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs530094621	chr7:15482568-15482569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs6461174	chr7:15482569-15482570	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs368140030	chr7:15482623-15482624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs73682006	chr7:15482665-15482666	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs537693244	chr7:15482666-15482667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs375947236	chr7:15482667-15482668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs369644786	chr7:15482688-15482689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs138657560	chr7:15482709-15482710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs141874690	chr7:15482736-15482737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs535353199	chr7:15482764-15482765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs372866068	chr7:15482765-15482766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs145511107	chr7:15482766-15482767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs572073401	chr7:15482780-15482781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs542052501	chr7:15482806-15482807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs181329341	chr7:15482813-15482814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs148089637	chr7:15482838-15482839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs7786405	chr7:15482847-15482848	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs113094034	chr7:15482888-15482889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs566585534	chr7:15482894-15482895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs117182260	chr7:15482895-15482896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs577034867	chr7:15482917-15482918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs540938194	chr7:15482925-15482926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs559277779	chr7:15483020-15483021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs530085112	chr7:15483054-15483055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs541914399	chr7:15483072-15483073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs563843245	chr7:15483171-15483172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs538749741	chr7:15483172-15483173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs557525050	chr7:15483189-15483190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	22522925	CNVD
Bladder cancer	21909424	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Osteosarcoma	21215367	CNVD

Chromatin state (count:330 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15469800-15489200	Weak transcription	Liver	Liver
2	chr7:15485800-15486600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:15486000-15486600	Enhancers	Brain Hippocampus Middle	brain
4	chr7:15486000-15486800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr7:15486200-15486600	Enhancers	Brain Anterior Caudate	brain
6	chr7:15496000-15499400	Enhancers	Osteobl	bone
7	chr7:15496000-15504800	Enhancers	NHDF-Ad	bronchial
8	chr7:15496200-15499400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:15496200-15499600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:15496200-15501000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:15496800-15499200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:15497600-15497800	Enhancers	Fetal Stomach	stomach
13	chr7:15497600-15498400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:15497600-15498800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:15497600-15499000	Enhancers	HSMMtube	muscle
16	chr7:15497600-15499000	Enhancers	NHLF	lung
17	chr7:15497800-15498000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:15497800-15498200	Enhancers	Fetal Heart	heart
19	chr7:15498000-15498600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:15498000-15498600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr7:15498200-15498600	Weak transcription	Fetal Heart	heart
22	chr7:15498400-15499000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:15498400-15499000	Enhancers	Liver	Liver
24	chr7:15498400-15499200	Enhancers	Fetal Muscle Leg	muscle
25	chr7:15498600-15498800	Enhancers	Fetal Heart	heart
26	chr7:15498600-15499200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:15498800-15499000	Enhancers	HUVEC	blood vessel
28	chr7:15498800-15499200	Enhancers	Right Atrium	heart
29	chr7:15498800-15500600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:15498800-15502800	Weak transcription	Fetal Heart	heart
31	chr7:15499000-15499200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:15499000-15499400	Enhancers	Fetal Brain Male	brain
33	chr7:15499000-15500600	Weak transcription	NHLF	lung
34	chr7:15499200-15501000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:15499200-15502000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr7:15499200-15503800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:15499200-15504800	Weak transcription	Fetal Muscle Leg	muscle
38	chr7:15499400-15500400	Weak transcription	Osteobl	bone
39	chr7:15499400-15500600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr7:15499400-15500600	Weak transcription	HUVEC	blood vessel
41	chr7:15499600-15500400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr7:15500400-15503000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr7:15500400-15504600	Enhancers	Osteobl	bone
44	chr7:15500600-15500800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr7:15500600-15500800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr7:15500600-15501600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr7:15500600-15501600	Enhancers	HUVEC	blood vessel
48	chr7:15500600-15502000	Enhancers	HSMM	muscle
49	chr7:15500600-15504800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr7:15500600-15504800	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links