Variant report

Variant	nsv887732
Chromosome Location	chr7:15509843-15573306
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:15531844..15534427-chr7:15538603..15541203,2	K562	blood:
2	chr7:15543347..15544306-chr7:15760242..15761135,3	MCF-7	breast:
3	chr7:15531844..15534427-chr7:15538603..15541203,2	K562	blood:

Extended variants
information (count: 2235 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:2235 , 50 per page) page: 1 2 3 4 5 6 7 ... 45

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs542031702	chr7:15510649-15510650	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs563530247	chr7:15510690-15510691	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs150349827	chr7:15510698-15510699	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs7803414	chr7:15510703-15510704	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs564519251	chr7:15510764-15510765	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs57583547	chr7:15510770-15510771	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs190017412	chr7:15510773-15510774	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs34781541	chr7:15510786-15510787	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs546812618	chr7:15510836-15510837	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs138153824	chr7:15510865-15510866	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs552941979	chr7:15510884-15510885	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs529419359	chr7:15510994-15510995	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs142649509	chr7:15511044-15511045	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs146065354	chr7:15511048-15511049	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs566679888	chr7:15511050-15511051	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs193205029	chr7:15511084-15511085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs184875597	chr7:15511165-15511166	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs570146448	chr7:15511177-15511178	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs534631477	chr7:15511187-15511188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs372713117	chr7:15511221-15511222	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs547796621	chr7:15511253-15511254	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs188128564	chr7:15511269-15511270	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs180977253	chr7:15511366-15511367	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs555585482	chr7:15511381-15511382	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs140010168	chr7:15511392-15511393	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs142045384	chr7:15511417-15511418	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs115587023	chr7:15511433-15511434	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs546147510	chr7:15511436-15511437	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs561313437	chr7:15511449-15511450	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs558168404	chr7:15511476-15511477	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs573126768	chr7:15511489-15511490	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs540623897	chr7:15511506-15511507	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs370046375	chr7:15511515-15511516	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs561999594	chr7:15511554-15511555	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs529428154	chr7:15511569-15511570	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs544396757	chr7:15511649-15511650	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs185383184	chr7:15511678-15511679	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs570994818	chr7:15511714-15511715	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs35315378	chr7:15511724-15511725	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs533428520	chr7:15511725-15511726	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs80053641	chr7:15511732-15511733	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs374366343	chr7:15511781-15511782	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs528031515	chr7:15511782-15511783	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs79495875	chr7:15511830-15511831	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs17168780	chr7:15511852-15511853	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs550745183	chr7:15511853-15511854	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs375627946	chr7:15511886-15511887	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs557173232	chr7:15511889-15511890	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs569106907	chr7:15511931-15511932	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs556867557	chr7:15511958-15511959	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	22522925	CNVD
Bladder cancer	21909424	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Osteosarcoma	21215367	CNVD

Chromatin state (count:220 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15510600-15511200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:15511000-15511200	Enhancers	Fetal Stomach	stomach
3	chr7:15511000-15511600	Enhancers	Brain Substantia Nigra	brain
4	chr7:15511200-15511600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr7:15511600-15512000	Enhancers	Brain Hippocampus Middle	brain
6	chr7:15511600-15512000	Weak transcription	Brain Substantia Nigra	brain
7	chr7:15512000-15512400	Enhancers	Brain Substantia Nigra	brain
8	chr7:15515200-15515400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:15515200-15515400	Enhancers	Liver	Liver
10	chr7:15515400-15515600	Flanking Active TSS	Liver	Liver
11	chr7:15515400-15515600	Enhancers	NHDF-Ad	bronchial
12	chr7:15515400-15515800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:15515400-15516200	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr7:15515600-15515800	Enhancers	Liver	Liver
15	chr7:15515600-15516000	Flanking Active TSS	NHDF-Ad	bronchial
16	chr7:15515600-15516600	Active TSS	Right Atrium	heart
17	chr7:15515800-15516200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:15515800-15516200	Active TSS	Ovary	ovary
19	chr7:15515800-15516600	Flanking Active TSS	Liver	Liver
20	chr7:15516000-15516200	Active TSS	NHDF-Ad	bronchial
21	chr7:15516600-15518200	Enhancers	Liver	Liver
22	chr7:15517600-15518400	Enhancers	Fetal Heart	heart
23	chr7:15518000-15518400	Enhancers	Left Ventricle	heart
24	chr7:15518200-15520200	Weak transcription	Liver	Liver
25	chr7:15520200-15520400	Enhancers	Fetal Heart	heart
26	chr7:15520200-15521400	Enhancers	Liver	Liver
27	chr7:15520400-15521000	Enhancers	Fetal Lung	lung
28	chr7:15521000-15527600	Weak transcription	Fetal Lung	lung
29	chr7:15521400-15525400	Weak transcription	Liver	Liver
30	chr7:15527600-15528200	Enhancers	Fetal Lung	lung
31	chr7:15528000-15528400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr7:15528200-15528800	Weak transcription	Fetal Lung	lung
33	chr7:15528400-15528800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr7:15528800-15529000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:15528800-15529400	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr7:15528800-15531800	Enhancers	Fetal Lung	lung
37	chr7:15529000-15529400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:15529000-15529400	Enhancers	Aorta	Aorta
39	chr7:15529000-15529400	Enhancers	Colon Smooth Muscle	Colon
40	chr7:15529000-15529400	Enhancers	Fetal Kidney	kidney
41	chr7:15529000-15529400	Enhancers	Fetal Muscle Leg	muscle
42	chr7:15529000-15529400	Enhancers	Left Ventricle	heart
43	chr7:15529000-15529400	Enhancers	Ovary	ovary
44	chr7:15529000-15529400	Enhancers	Psoas Muscle	Psoas
45	chr7:15529000-15529400	Enhancers	Right Atrium	heart
46	chr7:15529000-15529400	Enhancers	Stomach Smooth Muscle	stomach
47	chr7:15529000-15529400	Enhancers	NHDF-Ad	bronchial
48	chr7:15529000-15530200	Enhancers	Fetal Stomach	stomach
49	chr7:15529400-15534800	Weak transcription	NHDF-Ad	bronchial
50	chr7:15531800-15534600	Weak transcription	Fetal Lung	lung

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