Variant report

Variant	nsv887734
Chromosome Location	chr7:15521358-15580078
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:15531844..15534427-chr7:15538603..15541203,2	K562	blood:
2	chr7:15531844..15534427-chr7:15538603..15541203,2	K562	blood:
3	chr7:15543347..15544306-chr7:15760242..15761135,3	MCF-7	breast:

Extended variants
information (count: 2142 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:2142 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6461187	chr7:15521358-15521359	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs563764313	chr7:15521407-15521408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs138699740	chr7:15521412-15521413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs13234388	chr7:15521413-15521414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs5882513	chr7:15521415-15521416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs192975729	chr7:15521442-15521443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs546059961	chr7:15521456-15521457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs147503558	chr7:15521472-15521473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs199534040	chr7:15521476-15521477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs571650446	chr7:15521533-15521534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs537126806	chr7:15521586-15521587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs528696520	chr7:15521664-15521665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs62438759	chr7:15521716-15521717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs567439480	chr7:15521730-15521731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs368577015	chr7:15521748-15521749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs376626746	chr7:15521774-15521775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs569511331	chr7:15521780-15521781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs372172105	chr7:15521786-15521787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs76893718	chr7:15521798-15521799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs555542497	chr7:15521831-15521832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs537181112	chr7:15521835-15521836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs117323422	chr7:15521969-15521970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs139429952	chr7:15521997-15521998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs111645865	chr7:15522030-15522031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs534814370	chr7:15522044-15522045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs553261402	chr7:15522054-15522055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs372777446	chr7:15522096-15522097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs574828205	chr7:15522098-15522099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs78211943	chr7:15522129-15522130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs557353806	chr7:15522135-15522136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs150053554	chr7:15522167-15522168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs546246893	chr7:15522180-15522181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs564447562	chr7:15522224-15522225	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs573056327	chr7:15522247-15522248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs540439481	chr7:15522254-15522255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs144455057	chr7:15522374-15522375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs185608132	chr7:15522411-15522412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201548821	chr7:15522434-15522435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs76917808	chr7:15522550-15522551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs577739516	chr7:15522555-15522556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs552202947	chr7:15522599-15522600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs570461577	chr7:15522623-15522624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs35578374	chr7:15522729-15522730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs190283266	chr7:15522735-15522736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs182450122	chr7:15522750-15522751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs568341756	chr7:15522753-15522754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs535782151	chr7:15522757-15522758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs184920113	chr7:15522864-15522865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs188173412	chr7:15522875-15522876	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs575569136	chr7:15522935-15522936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	22522925	CNVD
Bladder cancer	21909424	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Osteosarcoma	21215367	CNVD

Chromatin state (count:198 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15520200-15521400	Enhancers	Liver	Liver
2	chr7:15521000-15527600	Weak transcription	Fetal Lung	lung
3	chr7:15521400-15525400	Weak transcription	Liver	Liver
4	chr7:15527600-15528200	Enhancers	Fetal Lung	lung
5	chr7:15528000-15528400	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr7:15528200-15528800	Weak transcription	Fetal Lung	lung
7	chr7:15528400-15528800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:15528800-15529000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:15528800-15529400	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr7:15528800-15531800	Enhancers	Fetal Lung	lung
11	chr7:15529000-15529400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:15529000-15529400	Enhancers	Aorta	Aorta
13	chr7:15529000-15529400	Enhancers	Colon Smooth Muscle	Colon
14	chr7:15529000-15529400	Enhancers	Fetal Kidney	kidney
15	chr7:15529000-15529400	Enhancers	Fetal Muscle Leg	muscle
16	chr7:15529000-15529400	Enhancers	Left Ventricle	heart
17	chr7:15529000-15529400	Enhancers	Ovary	ovary
18	chr7:15529000-15529400	Enhancers	Psoas Muscle	Psoas
19	chr7:15529000-15529400	Enhancers	Right Atrium	heart
20	chr7:15529000-15529400	Enhancers	Stomach Smooth Muscle	stomach
21	chr7:15529000-15529400	Enhancers	NHDF-Ad	bronchial
22	chr7:15529000-15530200	Enhancers	Fetal Stomach	stomach
23	chr7:15529400-15534800	Weak transcription	NHDF-Ad	bronchial
24	chr7:15531800-15534600	Weak transcription	Fetal Lung	lung
25	chr7:15532400-15532600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr7:15532400-15533000	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr7:15534200-15535000	Enhancers	Brain Germinal Matrix	brain
28	chr7:15534600-15535800	Enhancers	Fetal Lung	lung
29	chr7:15534800-15535200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr7:15534800-15535400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:15534800-15535600	Enhancers	NHDF-Ad	bronchial
32	chr7:15535400-15535600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
33	chr7:15542600-15544400	Enhancers	Muscle Satellite Cultured Cells	--
34	chr7:15542800-15543800	Enhancers	HUVEC	blood vessel
35	chr7:15543200-15544600	Enhancers	Osteobl	bone
36	chr7:15543400-15544200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr7:15543600-15544800	Enhancers	NHDF-Ad	bronchial
38	chr7:15543800-15544200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:15543800-15544800	Flanking Active TSS	HUVEC	blood vessel
40	chr7:15544000-15544400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr7:15544000-15545000	Enhancers	Fetal Lung	lung
42	chr7:15544200-15546600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr7:15544400-15546800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr7:15544400-15547000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr7:15544600-15545200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr7:15544600-15546600	Weak transcription	Osteobl	bone
47	chr7:15544800-15546000	Weak transcription	NHDF-Ad	bronchial
48	chr7:15544800-15547800	Enhancers	HUVEC	blood vessel
49	chr7:15545000-15554600	Weak transcription	Fetal Lung	lung
50	chr7:15545200-15546400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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