Variant report

Variant	nsv887735
Chromosome Location	chr7:15625992-15698178
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:8)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:15652713..15654226-chr7:15661044..15663947,2	K562	blood:
2	chr7:15653902..15655614-chr7:15659174..15660704,2	K562	blood:
3	chr7:15653902..15655614-chr7:15659174..15660704,2	K562	blood:
4	chr7:15652713..15654226-chr7:15661044..15663947,2	K562	blood:
5	chr7:15647591..15649240-chr7:15653736..15655611,2	K562	blood:
6	chr7:15647591..15649240-chr7:15653736..15655611,2	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AGMO-1	chr7:15696848-15697004	NONHSAT119279
2	lnc-AC006035.2-7	chr7:15694528-15694602	NONHSAT119278
3	lnc-AC006035.2-7	chr7:15694556-15694602	l_3365_chr7:15694555-15702238_placenta
4	lnc-AGMO-1	chr7:15695225-15695379	NONHSAT119279

No data

(count:8 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	MEOX2	hsa-miR-301a-3p	chr7:15651578-15651572
2	MEOX2	hsa-miR-130a-3p	chr7:15651731-15651725
3	MEOX2	hsa-miR-301a-3p	chr7:15651725-15651745
4	MEOX2	hsa-miR-130a-3p	chr7:15651725-15651744
5	MEOX2	hsa-miR-130a-3p	chr7:15651578-15651572
6	MEOX2	hsa-miR-130a-3p	chr7:15651572-15651591
7	MEOX2	hsa-miR-301a-3p	chr7:15651572-15651592
8	MEOX2	hsa-miR-301a-3p	chr7:15651731-15651725

Extended variants
information (count: 3327 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:3327 , 50 per page) page: 1 2 3 4 5 6 7 ... 67

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11765502	chr7:15625992-15625993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs112671711	chr7:15626005-15626006	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs184467803	chr7:15626007-15626008	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs146520866	chr7:15626019-15626020	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs541340453	chr7:15626030-15626031	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs59257514	chr7:15626048-15626049	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs559637894	chr7:15626123-15626124	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs532415060	chr7:15626169-15626170	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs146738611	chr7:15626189-15626190	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs574780181	chr7:15626191-15626192	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs541893661	chr7:15626198-15626199	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs563681315	chr7:15626223-15626224	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs17330786	chr7:15626233-15626234	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs189290336	chr7:15626240-15626241	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs28546985	chr7:15626252-15626253	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs564534372	chr7:15626267-15626268	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs548245724	chr7:15626282-15626283	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs528616181	chr7:15626285-15626286	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs141083177	chr7:15626310-15626311	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs568456757	chr7:15626338-15626339	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs535730014	chr7:15626341-15626342	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs181240885	chr7:15626344-15626345	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs372566918	chr7:15626363-15626364	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs547904338	chr7:15626373-15626374	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs559274481	chr7:15626390-15626391	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs536762542	chr7:15626422-15626423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs528091238	chr7:15626429-15626430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs186218045	chr7:15626430-15626431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs189329042	chr7:15626440-15626441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs577113422	chr7:15626445-15626446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs144989541	chr7:15626458-15626459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs138790143	chr7:15626498-15626499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs574816011	chr7:15626547-15626548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs114352652	chr7:15626553-15626554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs34274487	chr7:15626578-15626579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs113010143	chr7:15626613-15626614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs575556747	chr7:15626621-15626622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs190188402	chr7:15626633-15626634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs370096120	chr7:15626639-15626640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs181373552	chr7:15626644-15626645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs373315224	chr7:15626657-15626658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs564643336	chr7:15626680-15626681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs185899377	chr7:15626715-15626716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs190851997	chr7:15626716-15626717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs529580101	chr7:15626723-15626724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs150441607	chr7:15626724-15626725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs566050504	chr7:15626791-15626792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs36125507	chr7:15626800-15626801	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs35774501	chr7:15626802-15626803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs386710684	chr7:15626806-15626807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Bladder cancer	21909424	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:255 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15624800-15630000	Weak transcription	Fetal Lung	lung
2	chr7:15625800-15626000	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:15626000-15626400	Enhancers	Colon Smooth Muscle	Colon
4	chr7:15627600-15628200	Enhancers	Osteobl	bone
5	chr7:15630000-15630200	ZNF genes & repeats	Fetal Lung	lung
6	chr7:15630200-15648800	Weak transcription	Fetal Lung	lung
7	chr7:15634200-15634800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr7:15634400-15634800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:15637200-15639000	Weak transcription	Fetal Muscle Leg	muscle
10	chr7:15638600-15640000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:15638600-15640200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:15639000-15639200	Strong transcription	Fetal Muscle Leg	muscle
13	chr7:15639000-15640000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
14	chr7:15639200-15639400	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:15639400-15640000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:15639400-15640000	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr7:15639400-15640000	ZNF genes & repeats	Fetal Muscle Leg	muscle
18	chr7:15639800-15640200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:15640000-15651200	Weak transcription	Adipose Nuclei	Adipose
20	chr7:15640000-15662400	Weak transcription	Fetal Muscle Leg	muscle
21	chr7:15640000-15663800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr7:15641800-15642400	Enhancers	Fetal Brain Female	brain
23	chr7:15641800-15643000	Enhancers	Fetal Heart	heart
24	chr7:15642000-15643400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:15642000-15643400	Enhancers	NHDF-Ad	bronchial
26	chr7:15642600-15643200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:15642600-15643400	Enhancers	Osteobl	bone
28	chr7:15643200-15647000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:15643400-15646800	Weak transcription	NHDF-Ad	bronchial
30	chr7:15643400-15647600	Weak transcription	Osteobl	bone
31	chr7:15645400-15668200	Weak transcription	Right Ventricle	heart
32	chr7:15646600-15646800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:15646800-15647000	Enhancers	NHDF-Ad	bronchial
34	chr7:15647000-15647400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:15647000-15647400	Weak transcription	NHDF-Ad	bronchial
36	chr7:15647000-15647600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:15647000-15648000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr7:15647000-15648200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:15647200-15647400	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr7:15647400-15648000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:15647400-15648000	Enhancers	NHDF-Ad	bronchial
42	chr7:15647400-15648200	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr7:15647600-15647800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr7:15647600-15647800	Enhancers	Fetal Stomach	stomach
45	chr7:15647600-15647800	Enhancers	HSMMtube	muscle
46	chr7:15647600-15648000	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr7:15647600-15648000	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr7:15647600-15648000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr7:15647600-15648000	Enhancers	Osteobl	bone
50	chr7:15647600-15662400	Weak transcription	Left Ventricle	heart

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