Variant report

Variant	nsv887793
Chromosome Location	chr7:17380662-17471626
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:975)
CpG islands
(count:305)
Chromatin interactive
region (count:19)
LncRNA
region (count:23)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:975 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr7:17448110-17448897	HepG2	liver:	n/a	chr7:17448501-17448517 chr7:17448542-17448558
2	ARID3A	chr7:17445379-17445887	HepG2	liver:	n/a	n/a
3	ATF1	chr7:17409719-17409918	K562	blood:	n/a	n/a
4	ATF1	chr7:17394673-17394956	K562	blood:	n/a	n/a
5	ATF1	chr7:17448210-17448478	K562	blood:	n/a	n/a
6	ATF2	chr7:17441580-17443072	GM12878	blood:	n/a	n/a
7	ATF2	chr7:17441733-17443058	GM12878	blood:	n/a	n/a
8	ATF3	chr7:17445307-17445887	A549	lung:	n/a	n/a
9	ATF3	chr7:17448027-17448500	A549	lung:	n/a	n/a
10	ATF3	chr7:17448179-17448455	K562	blood:	n/a	n/a
11	ATF3	chr7:17445259-17445891	A549	lung:	n/a	n/a
12	ATF3	chr7:17448026-17448559	A549	lung:	n/a	n/a
13	BACH1	chr7:17402205-17402446	H1-hESC	embryonic stem cell:	n/a	n/a
14	BATF	chr7:17442276-17443012	GM12878	blood:	n/a	n/a
15	BATF	chr7:17442479-17442964	GM12878	blood:	n/a	n/a
16	BATF	chr7:17441849-17442266	GM12878	blood:	n/a	n/a
17	BATF	chr7:17441907-17442179	GM12878	blood:	n/a	n/a
18	BATF	chr7:17422150-17422561	GM12878	blood:	n/a	n/a
19	BCL11A	chr7:17442511-17442916	GM12878	blood:	n/a	n/a
20	BCL11A	chr7:17442448-17443004	GM12878	blood:	n/a	n/a
21	BCL11A	chr7:17441763-17442232	GM12878	blood:	n/a	chr7:17441972-17441981 chr7:17441975-17441984
22	BCL11A	chr7:17441853-17442099	GM12878	blood:	n/a	chr7:17441972-17441981 chr7:17441975-17441984
23	BCL11A	chr7:17413892-17414195	GM12878	blood:	n/a	n/a
24	BCL3	chr7:17448049-17448523	A549	lung:	n/a	n/a
25	BCL3	chr7:17411033-17411750	A549	lung:	n/a	chr7:17411453-17411462 chr7:17411452-17411461
26	BCL3	chr7:17445311-17445931	A549	lung:	n/a	n/a
27	BCL3	chr7:17445232-17446030	A549	lung:	n/a	n/a
28	BCL3	chr7:17447908-17448923	A549	lung:	n/a	n/a
29	BCLAF1	chr7:17441653-17442952	GM12878	blood:	n/a	chr7:17441972-17441981 chr7:17441975-17441984
30	BCLAF1	chr7:17442133-17442966	GM12878	blood:	n/a	n/a
31	BHLHE40	chr7:17445375-17445784	HepG2	liver:	n/a	n/a
32	BHLHE40	chr7:17413746-17414159	GM12878	blood:	n/a	n/a
33	BHLHE40	chr7:17409712-17409938	K562	blood:	n/a	n/a
34	BHLHE40	chr7:17448186-17448464	HepG2	liver:	n/a	n/a
35	BHLHE40	chr7:17451423-17451834	GM12878	blood:	n/a	n/a
36	BHLHE40	chr7:17422034-17422035	GM12878	blood:	n/a	n/a
37	BHLHE40	chr7:17439507-17439764	GM12878	blood:	n/a	n/a
38	BHLHE40	chr7:17445304-17445710	A549	lung:	n/a	n/a
39	BHLHE40	chr7:17411878-17412262	A549	lung:	n/a	n/a
40	BHLHE40	chr7:17441635-17443028	GM12878	blood:	n/a	n/a
41	BRCA1	chr7:17448075-17448667	Hela-S3	cervix:	n/a	n/a
42	BRCA1	chr7:17410903-17412330	Hela-S3	cervix:	n/a	n/a
43	BRCA1	chr7:17446371-17446826	Hela-S3	cervix:	n/a	n/a
44	BRCA1	chr7:17445429-17445936	Hela-S3	cervix:	n/a	n/a
45	CBX3	chr7:17445320-17445880	HCT-116	colon:	n/a	n/a
46	CBX3	chr7:17448004-17448590	HCT-116	colon:	n/a	n/a
47	CBX3	chr7:17411166-17412274	HCT-116	colon:	n/a	n/a
48	CBX3	chr7:17447998-17448665	HCT-116	colon:	n/a	n/a
49	CBX3	chr7:17402146-17402486	K562	blood:	n/a	n/a
50	CBX3	chr7:17434201-17434505	K562	blood:	n/a	n/a

(count:305 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:17424006-17424056	T-47D	breast:	n/a
2	chr7:17460742-17460792	HCPEpiC	choroid plexus:	n/a
3	chr7:17460742-17460792	GM06990	blood:	n/a
4	chr7:17408595-17408645	PrEC	prostate:	n/a
5	chr7:17408595-17408645	PFSK-1	brain:	n/a
6	chr7:17402192-17402242	SAEC	small airway:	n/a
7	chr7:17424006-17424056	HepG2	liver:	n/a
8	chr7:17460742-17460792	LNCaP	prostate:	n/a
9	chr7:17402192-17402242	CMK	blood:	n/a
10	chr7:17408595-17408645	NHDF-neo	bronchial:	n/a
11	chr7:17460742-17460792	GM12892	blood:	n/a
12	chr7:17460742-17460792	PFSK-1	brain:	n/a
13	chr7:17460742-17460792	NHDF-neo	bronchial:	n/a
14	chr7:17424006-17424056	AG04449	skin:	fetal
15	chr7:17402192-17402242	GM19239	blood:	n/a
16	chr7:17410340-17410390	NH-A	brain:	n/a
17	chr7:17402192-17402242	NH-A	brain:	n/a
18	chr7:17460742-17460792	HAEpiC	amniotic membrane:	n/a
19	chr7:17460742-17460792	ProgFib	skin:	n/a
20	chr7:17402192-17402242	H1-hESC	embryonic stem cell:	embryo
21	chr7:17460742-17460792	MCF-7	breast:	n/a
22	chr7:17408595-17408645	GM12892	blood:	n/a
23	chr7:17408595-17408645	SKMC	muscle:	n/a
24	chr7:17408595-17408645	GM19239	blood:	n/a
25	chr7:17460742-17460792	HCM	heart:	n/a
26	chr7:17410340-17410390	U87	brain:	n/a
27	chr7:17410340-17410390	AoSMC	blood vessel:	n/a
28	chr7:17408595-17408645	GM12891	blood:	n/a
29	chr7:17410340-17410390	A549	lung:	n/a
30	chr7:17460742-17460792	AG09309	skin:	n/a
31	chr7:17402192-17402242	AoSMC	blood vessel:	n/a
32	chr7:17460742-17460792	BJ	skin:	n/a
33	chr7:17424006-17424056	CMK	blood:	n/a
34	chr7:17424006-17424056	NB4	blood:	n/a
35	chr7:17424006-17424056	HEK293	kidney:	embryo
36	chr7:17408595-17408645	HRCEpiC	kidney:	n/a
37	chr7:17424006-17424056	IMR90	lung:	fetal
38	chr7:17424006-17424056	Hepatocyte	liver:	n/a
39	chr7:17410340-17410390	HAEpiC	amniotic membrane:	n/a
40	chr7:17408595-17408645	HNPCEpiC	eye:	n/a
41	chr7:17408595-17408645	ProgFib	skin:	n/a
42	chr7:17410340-17410390	SK-N-MC	brain:	n/a
43	chr7:17460742-17460792	HCF	heart:	n/a
44	chr7:17460742-17460792	GM12891	blood:	n/a
45	chr7:17402192-17402242	ECC-1	luminal epithelium:	n/a
46	chr7:17460742-17460792	NHBE	bronchial:	n/a
47	chr7:17424006-17424056	NHBE	bronchial:	n/a
48	chr7:17460742-17460792	RPTEC	kidney:	n/a
49	chr7:17402192-17402242	HRPEpiC	eye:	n/a
50	chr7:17410340-17410390	MCF-7	breast:	n/a

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:17393956..17396840-chr7:17402378..17404335,2	K562	blood:
2	chr7:17448128..17449838-chr7:17451617..17454336,2	MCF-7	breast:
3	chr7:17385888..17388096-chr7:17407942..17409805,2	MCF-7	breast:
4	chr7:17402053..17404389-chr7:17408821..17410767,2	MCF-7	breast:
5	chr7:17394503..17397542-chr7:17400544..17403878,3	K562	blood:
6	chr7:17380916..17383952-chr7:17385235..17388322,3	MCF-7	breast:
7	chr7:17448128..17449838-chr7:17451617..17454336,2	MCF-7	breast:
8	chr7:17338744..17341559-chr7:17444382..17446981,2	MCF-7	breast:
9	chr7:17398384..17399980-chr7:17400183..17402691,2	K562	blood:
10	chr7:17402053..17404389-chr7:17408821..17410767,2	MCF-7	breast:
11	chr7:17349709..17351972-chr7:17405529..17407075,2	MCF-7	breast:
12	chr7:17411899..17413938-chr7:17417894..17419899,4	MCF-7	breast:
13	chr7:17385888..17388096-chr7:17407942..17409805,2	MCF-7	breast:
14	chr7:17469734..17471826-chr7:17488594..17490473,2	MCF-7	breast:
15	chr7:17394503..17397542-chr7:17400544..17403878,3	K562	blood:
16	chr7:17393956..17396840-chr7:17402378..17404335,2	K562	blood:
17	chr7:17380916..17383952-chr7:17385235..17388322,3	MCF-7	breast:
18	chr7:17398384..17399980-chr7:17400183..17402691,2	K562	blood:
19	chr7:17395326..17397205-chr7:17411343..17413592,2	MCF-7	breast:

(count:23 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNX13-5	chr7:17380931-17381204	l_3367_chr7:17380930-17457210_prostate
2	lnc-SNX13-5	chr7:17441622-17442386	l_3367_chr7:17380930-17457210_prostate
3	lnc-SNX13-5	chr7:17440626-17440649	NONHSAT119331
4	lnc-SNX13-5	chr7:17466631-17466821	NONHSAT119331
5	lnc-SNX13-5	chr7:17463483-17463585	NONHSAT119332
6	lnc-AHR-4	chr7:17457144-17457210	NONHSAT119328
7	lnc-SNX13-5	chr7:17462827-17462911	l_3367_chr7:17380930-17457210_prostate
8	lnc-SNX13-5	chr7:17457149-17457210	l_3367_chr7:17380930-17457210_prostate
9	lnc-SNX13-4	chr7:17469555-17469691	l_3368_chr7:17469554-17530296_testes
10	lnc-SNX13-5	chr7:17463483-17463741	l_3367_chr7:17380930-17457210_prostate
11	lnc-SNX13-5	chr7:17441097-17441254	NONHSAT119331
12	lnc-SNX13-4	chr7:17471319-17471375	l_3368_chr7:17469554-17530296_testes
13	lnc-SNX13-5	chr7:17442179-17442382	NONHSAT119332
14	lnc-SNX13-5	chr7:17462827-17462911	NONHSAT119331
15	lnc-SNX13-5	chr7:17463608-17463738	NONHSAT119331
16	lnc-AHR-4	chr7:17455030-17455097	NONHSAT119328
17	lnc-AHR-1	chr7:17414491-17414679	ENSG00000236318
18	lnc-AHR-1	chr7:17414541-17414679	NR_110014
19	lnc-AHR-1	chr7:17414541-17414679	NR_110015
20	lnc-AHR-4	chr7:17381016-17381204	NONHSAT119328
21	lnc-SNX13-4	chr7:17471319-17471375	NONHSAT119333
22	lnc-SNX13-4	chr7:17469594-17469691	NONHSAT119333
23	lnc-SNX13-5	chr7:17462831-17462911	NONHSAT119332

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	AHR	hsa-miR-124-3p	chr7:17383473-17383493
2	AHR	hsa-miR-124-3p	chr7:17383486-17383493

Variant related genes	Relation type
ENSG00000236318	TF binding region
ENSG00000199473	TF binding region
ENSG00000236318	CpG island
ENSG00000199473	CpG island
ENSG00000199473	chromatin interactions
ENSG00000237773	chromatin interactions

Extended variants
information (count: 3712 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:3712 , 50 per page) page: 1 2 3 4 5 6 7 ... 75

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2040623	chr7:17380662-17380663	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs368169052	chr7:17380674-17380675	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs554166478	chr7:17380726-17380727	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs564423776	chr7:17380743-17380744	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs543404959	chr7:17380774-17380775	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs192996014	chr7:17380804-17380805	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs185092576	chr7:17380836-17380837	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs150444584	chr7:17380838-17380839	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs189357237	chr7:17380844-17380845	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs533190806	chr7:17380860-17380861	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs147217201	chr7:17380872-17380873	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs532806283	chr7:17380892-17380893	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs148311202	chr7:17380897-17380898	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs181769295	chr7:17380909-17380910	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs141416570	chr7:17381048-17381049	Enhancers Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs183686897	chr7:17381146-17381147	Enhancers Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs372369759	chr7:17381168-17381169	Enhancers Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs188254959	chr7:17381173-17381174	Enhancers Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs556624461	chr7:17381196-17381197	Enhancers Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs571977573	chr7:17381278-17381279	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs539290478	chr7:17381288-17381289	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs554227822	chr7:17381308-17381309	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs115419296	chr7:17381321-17381322	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs150814051	chr7:17381340-17381341	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs555027448	chr7:17381352-17381353	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs79581634	chr7:17381360-17381361	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs374385644	chr7:17381368-17381369	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs180822479	chr7:17381369-17381370	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs544388048	chr7:17381375-17381376	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs114741090	chr7:17381377-17381378	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs533061467	chr7:17381467-17381468	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs368782344	chr7:17381533-17381534	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs559733854	chr7:17381535-17381536	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs186503523	chr7:17381635-17381636	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs527271251	chr7:17381655-17381656	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs191421089	chr7:17381668-17381669	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs567344355	chr7:17381710-17381711	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs372378920	chr7:17381739-17381740	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs2106728	chr7:17381740-17381741	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs111914258	chr7:17381770-17381771	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs116607854	chr7:17381784-17381785	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs571839261	chr7:17381797-17381798	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs539352929	chr7:17381798-17381799	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs548097018	chr7:17381799-17381800	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs566109944	chr7:17381908-17381909	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs13223671	chr7:17381919-17381920	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs561520720	chr7:17381953-17381954	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs139315263	chr7:17381978-17381979	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs554808349	chr7:17382008-17382009	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs576491396	chr7:17382017-17382018	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Bladder cancer	21909424	CNVD
Cancer	21183584	CNVD
Autism	20808228	CNVD
Sezary syndrome	18413736	CNVD
Autism	22495309	CNVD
Depressive disorder	21152026	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:863 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:17346600-17382200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:17347400-17384800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr7:17347600-17389800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:17347800-17390000	Weak transcription	Fetal Stomach	stomach
5	chr7:17352000-17387600	Weak transcription	Esophagus	oesophagus
6	chr7:17356200-17409400	Weak transcription	Pancreas	Pancrea
7	chr7:17359000-17396000	Weak transcription	Right Ventricle	heart
8	chr7:17361400-17382400	Weak transcription	Fetal Heart	heart
9	chr7:17361400-17387800	Strong transcription	Placenta	Placenta
10	chr7:17361600-17382600	Weak transcription	Colonic Mucosa	Colon
11	chr7:17362000-17384200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:17362000-17399400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:17365000-17383000	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr7:17366600-17381200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:17367800-17383400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:17368000-17383000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr7:17368200-17383200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:17369200-17383000	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr7:17370600-17386600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:17373000-17381600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:17373600-17393600	Weak transcription	Stomach Mucosa	stomach
22	chr7:17376000-17383600	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:17377000-17389600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:17377400-17384200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr7:17377800-17381600	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr7:17377800-17382800	Strong transcription	Primary hematopoietic stem cells	blood
27	chr7:17378000-17380800	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr7:17378000-17382800	Strong transcription	Fetal Intestine Large	intestine
29	chr7:17378000-17382800	Strong transcription	HMEC	breast
30	chr7:17378200-17381200	Strong transcription	NH-A	brain
31	chr7:17378200-17384000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr7:17378200-17386000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:17378400-17388200	Weak transcription	Fetal Intestine Small	intestine
34	chr7:17378600-17380800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr7:17378600-17382800	Genic enhancers	Liver	Liver
36	chr7:17378600-17383000	Strong transcription	HepG2	liver
37	chr7:17378800-17380800	Strong transcription	Hela-S3	cervix
38	chr7:17378800-17383200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:17379200-17381200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:17379200-17383000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr7:17379400-17384200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr7:17379600-17380800	Genic enhancers	Osteobl	bone
43	chr7:17379600-17381400	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr7:17379600-17381400	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr7:17379600-17408600	Weak transcription	Small Intestine	intestine
46	chr7:17379800-17381000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr7:17379800-17381400	Enhancers	Brain Cingulate Gyrus	brain
48	chr7:17379800-17381400	Weak transcription	Fetal Muscle Leg	muscle
49	chr7:17379800-17381600	Weak transcription	Ovary	ovary
50	chr7:17379800-17382200	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links