Variant report

Variant	nsv887825
Chromosome Location	chr7:19536977-19615992
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:19552748..19555589-chr7:19559461..19562039,2	K562	blood:
2	chr7:19610590..19613391-chr7:19614778..19616457,3	K562	blood:
3	chr7:19552748..19555589-chr7:19559461..19562039,2	K562	blood:
4	chr7:19610590..19613391-chr7:19614778..19616457,3	K562	blood:
5	chr7:18732759..18733606-chr7:19591000..19591516,2	MCF-7	breast:
6	chr1:102456863..102457700-chr7:19592037..19592862,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HDAC9-12	chr7:19584677-19584754	NONHSAT119386
2	lnc-HDAC9-5	chr7:19615910-19616041	ENSG00000223838
3	lnc-HDAC9-12	chr7:19582435-19582566	NONHSAT119386

No data

Extended variants
information (count: 3492 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:3492 , 50 per page) page: 1 2 3 4 5 6 7 ... 70

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs767671	chr7:19536977-19536978	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs572345994	chr7:19536998-19536999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs148278246	chr7:19537027-19537028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs528488798	chr7:19537037-19537038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs55716000	chr7:19537100-19537101	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs563401433	chr7:19537108-19537109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs570850595	chr7:19537181-19537182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs529540022	chr7:19537182-19537183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs62446649	chr7:19537212-19537213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs189912935	chr7:19537215-19537216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs183286953	chr7:19537241-19537242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs565862492	chr7:19537276-19537277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs533802073	chr7:19537297-19537298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs555045128	chr7:19537309-19537310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs539407094	chr7:19537325-19537326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs573903752	chr7:19537368-19537369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs141245094	chr7:19537404-19537405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs150779998	chr7:19537413-19537414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs113735285	chr7:19537448-19537449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs187827780	chr7:19537482-19537483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs536609721	chr7:19537513-19537514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs370518339	chr7:19537540-19537541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs373618425	chr7:19537555-19537556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs115955197	chr7:19537557-19537558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs573221447	chr7:19537564-19537565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs10486351	chr7:19537603-19537604	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs17150289	chr7:19537646-19537647	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs529656034	chr7:19537647-19537648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs191192859	chr7:19537673-19537674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs138206886	chr7:19537747-19537748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs115773305	chr7:19537751-19537752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs551972600	chr7:19537759-19537760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs371066108	chr7:19537769-19537770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs566598701	chr7:19537798-19537799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs375487106	chr7:19537814-19537815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs543760756	chr7:19537815-19537816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs549007946	chr7:19537829-19537830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs567140287	chr7:19537831-19537832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs183027263	chr7:19537882-19537883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs556040738	chr7:19537906-19537907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs571179732	chr7:19537914-19537915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs188670686	chr7:19537917-19537918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs553669134	chr7:19537919-19537920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs573334161	chr7:19537925-19537926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs10486352	chr7:19537945-19537946	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs555792010	chr7:19537959-19537960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs76303533	chr7:19538083-19538084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs76823190	chr7:19538086-19538087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs10486353	chr7:19538099-19538100	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs533654097	chr7:19538107-19538108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Cancer	21183584	CNVD
Autism	20808228	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
abnormal development	18461090	CNVD
Myelofibrosis	22110671	CNVD
Heart disease	21282601	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:254 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19534800-19539400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:19547600-19548600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:19547600-19548600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:19547600-19549000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:19547800-19548400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:19547800-19548600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:19547800-19548800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:19547800-19548800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:19547800-19549000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:19548000-19548800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:19548000-19548800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr7:19548000-19548800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:19548000-19549600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:19548200-19548600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:19548400-19548800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:19548400-19549000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:19548600-19548800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:19548800-19549400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:19548800-19559000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:19555000-19555600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:19555600-19556800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:19558800-19559600	Enhancers	HMEC	breast
23	chr7:19558800-19560600	Enhancers	Fetal Heart	heart
24	chr7:19558800-19560800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr7:19559000-19559200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:19559000-19559600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:19559000-19560600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr7:19559200-19559600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:19559200-19559600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:19559200-19559600	Enhancers	Fetal Muscle Leg	muscle
31	chr7:19559200-19559600	Enhancers	Psoas Muscle	Psoas
32	chr7:19559200-19559600	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr7:19559200-19559800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:19559200-19559800	Enhancers	Fetal Stomach	stomach
35	chr7:19559200-19559800	Enhancers	HSMMtube	muscle
36	chr7:19559200-19560000	Enhancers	Osteobl	bone
37	chr7:19559200-19560200	Enhancers	NH-A	brain
38	chr7:19559200-19560400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:19559200-19560400	Enhancers	HSMM	muscle
40	chr7:19559400-19560000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:19559600-19560000	Enhancers	Brain Germinal Matrix	brain
42	chr7:19559600-19561800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr7:19559600-19562000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr7:19559600-19562200	Weak transcription	HMEC	breast
45	chr7:19559800-19562000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:19560000-19561600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:19560000-19561800	Weak transcription	Osteobl	bone
48	chr7:19560200-19562000	Weak transcription	NH-A	brain
49	chr7:19560400-19561400	Weak transcription	HSMM	muscle
50	chr7:19560600-19562000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links