Variant report

Variant	nsv888084
Chromosome Location	chr7:61077934-61163004
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4063 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:4063 , 50 per page) page: 1 2 3 4 5 6 7 ... 82

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs558459806	chr7:61077937-61077938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs576810500	chr7:61077951-61077952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs537409633	chr7:61077966-61077967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs555464148	chr7:61077967-61077968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs574023501	chr7:61077969-61077970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs62460893	chr7:61077988-61077989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs377729916	chr7:61077998-61077999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs553069884	chr7:61078006-61078007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs577391382	chr7:61078007-61078008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs371183515	chr7:61078012-61078013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs544808780	chr7:61078013-61078014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs563202635	chr7:61078035-61078036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs182985189	chr7:61078043-61078044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs530706762	chr7:61078054-61078055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs542954877	chr7:61078058-61078059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs200617159	chr7:61078060-61078061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs375712993	chr7:61078065-61078066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs201824628	chr7:61078069-61078070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs200123642	chr7:61078071-61078072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs112960491	chr7:61078072-61078073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs528123341	chr7:61078079-61078080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs374395750	chr7:61078097-61078098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs112118413	chr7:61078102-61078103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs571385457	chr7:61078113-61078114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs79636205	chr7:61078124-61078125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs201952045	chr7:61078127-61078128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs111785741	chr7:61078133-61078134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs533518031	chr7:61078139-61078140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs552011235	chr7:61078141-61078142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201625463	chr7:61078153-61078154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs570268991	chr7:61078159-61078160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs537339219	chr7:61078173-61078174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs199988154	chr7:61078174-61078175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs567521571	chr7:61078177-61078178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs534721688	chr7:61078178-61078179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs201102620	chr7:61078182-61078183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs553004735	chr7:61078193-61078194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201879610	chr7:61078226-61078227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs577727368	chr7:61078235-61078236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs371323805	chr7:61078250-61078251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs199977375	chr7:61078255-61078256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs141377565	chr7:61078258-61078259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs199886783	chr7:61078267-61078268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs545140180	chr7:61078277-61078278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs201209694	chr7:61078278-61078279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs556735663	chr7:61078281-61078282	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs202213768	chr7:61078282-61078283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs144849480	chr7:61078296-61078297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs140042709	chr7:61078297-61078298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs542542257	chr7:61078303-61078304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Autism	18414403	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
Recurrent pregnancy loss	19789632	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD

Chromatin state (count:409 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:61073400-61079000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:61074600-61079000	Weak transcription	Pancreas	Pancrea
3	chr7:61077400-61079000	Weak transcription	Fetal Heart	heart
4	chr7:61078600-61079000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:61078800-61079000	Enhancers	Aorta	Aorta
6	chr7:61078800-61086000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr7:61079000-61079200	Bivalent/Poised TSS	Esophagus	oesophagus
8	chr7:61079000-61079400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:61079000-61079400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:61079000-61079400	ZNF genes & repeats	Pancreas	Pancrea
11	chr7:61079000-61079600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
12	chr7:61079000-61079600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
13	chr7:61079000-61079600	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
14	chr7:61079000-61079600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
15	chr7:61079000-61079600	ZNF genes & repeats	Fetal Thymus	thymus
16	chr7:61079000-61079600	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
17	chr7:61079000-61079800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
18	chr7:61079000-61079800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:61079000-61079800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:61079000-61079800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
21	chr7:61079000-61079800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:61079000-61079800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:61079000-61079800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:61079000-61079800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:61079000-61079800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:61079000-61079800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
27	chr7:61079000-61079800	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
28	chr7:61079000-61079800	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
29	chr7:61079000-61079800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
30	chr7:61079000-61079800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
31	chr7:61079000-61079800	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
32	chr7:61079000-61079800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
33	chr7:61079000-61079800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
34	chr7:61079000-61079800	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr7:61079000-61079800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
36	chr7:61079000-61079800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:61079000-61079800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
38	chr7:61079000-61079800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
39	chr7:61079000-61079800	ZNF genes & repeats	Adipose Nuclei	Adipose
40	chr7:61079000-61079800	Flanking Active TSS	Aorta	Aorta
41	chr7:61079000-61079800	ZNF genes & repeats	Liver	Liver
42	chr7:61079000-61079800	ZNF genes & repeats	Brain Angular Gyrus	brain
43	chr7:61079000-61079800	ZNF genes & repeats	Brain Anterior Caudate	brain
44	chr7:61079000-61079800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
45	chr7:61079000-61079800	ZNF genes & repeats	Brain Hippocampus Middle	brain
46	chr7:61079000-61079800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
47	chr7:61079000-61079800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
48	chr7:61079000-61079800	ZNF genes & repeats	Brain Substantia Nigra	brain
49	chr7:61079000-61079800	ZNF genes & repeats	Colon Smooth Muscle	Colon
50	chr7:61079000-61079800	ZNF genes & repeats	Duodenum Mucosa	Duodenum

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