Variant report

Variant	nsv888087
Chromosome Location	chr7:61084546-61235937
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3063 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:3063 , 50 per page) page: 1 2 3 4 5 6 7 ... 62

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs35380839	chr7:61084546-61084547	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs371150501	chr7:61084551-61084552	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs77255163	chr7:61084552-61084553	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs149743445	chr7:61084553-61084554	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs73602608	chr7:61084555-61084556	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs77389684	chr7:61084564-61084565	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199548140	chr7:61084569-61084570	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs200300548	chr7:61084578-61084579	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs36130342	chr7:61084580-61084581	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs370148659	chr7:61084583-61084584	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs4363770	chr7:61084585-61084586	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs374619433	chr7:61084586-61084587	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs368108582	chr7:61084589-61084590	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs76638470	chr7:61084595-61084596	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs372388112	chr7:61084603-61084604	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs374415043	chr7:61084607-61084608	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs368511387	chr7:61084611-61084612	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs372597667	chr7:61084618-61084619	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs77911971	chr7:61084624-61084625	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs74417776	chr7:61084625-61084626	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs377244259	chr7:61084627-61084628	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs74866292	chr7:61084628-61084629	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs75083557	chr7:61084631-61084632	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs368733055	chr7:61084632-61084633	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs371458941	chr7:61084633-61084634	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs199832020	chr7:61084636-61084637	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs76701144	chr7:61084638-61084639	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs76078412	chr7:61084641-61084642	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs75731546	chr7:61084644-61084645	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs77445487	chr7:61084648-61084649	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs376073108	chr7:61084652-61084653	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs369377849	chr7:61084656-61084657	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs532215923	chr7:61084660-61084661	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs138968073	chr7:61084661-61084662	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs79275426	chr7:61084663-61084664	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs563587063	chr7:61084672-61084673	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs75628793	chr7:61084673-61084674	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs373621482	chr7:61084678-61084679	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs376304864	chr7:61084680-61084681	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs369553349	chr7:61084681-61084682	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs373281465	chr7:61084683-61084684	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs376478340	chr7:61084685-61084686	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs370284379	chr7:61084686-61084687	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs36153788	chr7:61084688-61084689	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs78774035	chr7:61084700-61084701	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs372395741	chr7:61084704-61084705	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs79923948	chr7:61084709-61084710	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs373780038	chr7:61084710-61084711	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs199598479	chr7:61084713-61084714	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs112989823	chr7:61084728-61084729	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Autism	18414403	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
Recurrent pregnancy loss	19789632	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD

Chromatin state (count:310 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:61078800-61086000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr7:61079000-61085600	ZNF genes & repeats	Primary T cells from cord blood	blood
3	chr7:61079000-61085600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:61079000-61085800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:61079000-61086000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr7:61079000-61086000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr7:61079000-61086000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr7:61079800-61085200	Weak transcription	Thymus	Thymus
9	chr7:61079800-61085200	Weak transcription	NHEK	skin
10	chr7:61079800-61085600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr7:61080600-61085800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr7:61080600-61086000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:61080800-61085600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr7:61080800-61085800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
15	chr7:61080800-61086000	ZNF genes & repeats	Liver	Liver
16	chr7:61080800-61086000	ZNF genes & repeats	Fetal Brain Male	brain
17	chr7:61083400-61085600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
18	chr7:61083400-61085600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:61083400-61086000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr7:61083800-61084800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:61083800-61085000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:61083800-61085000	Weak transcription	Aorta	Aorta
23	chr7:61083800-61085000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr7:61083800-61085000	Weak transcription	K562	blood
25	chr7:61083800-61085200	Weak transcription	Right Ventricle	heart
26	chr7:61083800-61085200	Weak transcription	NHDF-Ad	bronchial
27	chr7:61084000-61085200	Weak transcription	GM12878-XiMat	blood
28	chr7:61084000-61085200	Weak transcription	NH-A	brain
29	chr7:61084200-61085000	Weak transcription	HUVEC	blood vessel
30	chr7:61084600-61086000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
31	chr7:61084800-61085400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:61084800-61085400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
33	chr7:61084800-61085600	ZNF genes & repeats	Primary B cells from cord blood	blood
34	chr7:61084800-61085600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
35	chr7:61084800-61085600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
36	chr7:61084800-61085600	ZNF genes & repeats	Psoas Muscle	Psoas
37	chr7:61084800-61085800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
38	chr7:61084800-61085800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
39	chr7:61084800-61085800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr7:61085000-61085400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:61085000-61085400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:61085000-61085400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:61085000-61085400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
44	chr7:61085000-61085400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
45	chr7:61085000-61085400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
46	chr7:61085000-61085400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr7:61085000-61085400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
48	chr7:61085000-61085400	ZNF genes & repeats	Brain Anterior Caudate	brain
49	chr7:61085000-61085400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
50	chr7:61085000-61085400	ZNF genes & repeats	Brain Substantia Nigra	brain

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