Variant report

Variant	nsv888092
Chromosome Location	chr7:61092808-61736882
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:61552820..61553340-chr9:66795352..66795871,2	MCF-7	breast:
2	chr7:61552820..61553340-chr8:46850618..46851139,4	MCF-7	breast:
3	chr7:61552820..61553340-chr9:66822994..66823521,2	MCF-7	breast:
4	chr7:61552820..61553340-chr7:62284727..62285248,3	MCF-7	breast:

Extended variants
information (count: 6311 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:6311 , 50 per page) page: 1 2 3 4 5 6 7 ... 127

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs370407111	chr7:61092811-61092812	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs372785641	chr7:61092817-61092818	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs377579526	chr7:61092819-61092820	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs112363165	chr7:61092829-61092830	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs549891170	chr7:61092839-61092840	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs113811650	chr7:61092841-61092842	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs370910002	chr7:61092846-61092847	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs75555748	chr7:61092850-61092851	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs113756759	chr7:61092856-61092857	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs561761778	chr7:61092857-61092858	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs77581239	chr7:61092858-61092859	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs529315950	chr7:61092861-61092862	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs78108051	chr7:61092862-61092863	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs76649289	chr7:61092864-61092865	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs78160440	chr7:61092869-61092870	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs547486774	chr7:61092871-61092872	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs147474063	chr7:61092874-61092875	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs565495856	chr7:61092875-61092876	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs113951790	chr7:61092882-61092883	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs79141247	chr7:61092884-61092885	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs76177261	chr7:61092892-61092893	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs111990019	chr7:61092893-61092894	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs78984505	chr7:61092894-61092895	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs111625470	chr7:61092905-61092906	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs147887422	chr7:61092919-61092920	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs551600578	chr7:61092920-61092921	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs140902964	chr7:61092922-61092923	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs139363359	chr7:61092924-61092925	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs150641870	chr7:61092925-61092926	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs144172845	chr7:61092926-61092927	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs141026788	chr7:61092927-61092928	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs569831695	chr7:61092932-61092933	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs76053362	chr7:61092933-61092934	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs146241546	chr7:61092935-61092936	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs149671264	chr7:61092936-61092937	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs77765163	chr7:61092938-61092939	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs141760395	chr7:61092939-61092940	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs138749643	chr7:61092940-61092941	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs75939037	chr7:61092941-61092942	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs145089010	chr7:61092942-61092943	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs537388178	chr7:61092946-61092947	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs80156563	chr7:61092950-61092951	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs138337645	chr7:61092951-61092952	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs144621117	chr7:61092952-61092953	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs144354475	chr7:61092954-61092955	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs78651233	chr7:61092955-61092956	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs573701324	chr7:61092956-61092957	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs143378239	chr7:61092965-61092966	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs76661882	chr7:61092969-61092970	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs140478954	chr7:61092973-61092974	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Autism	18414403	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
Recurrent pregnancy loss	19789632	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	20967226	CNVD
Schizophrenia	23813976	CNVD
Bipolar disorder	19214233	CNVD
early-passage human iPS cells	21368824	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD

Chromatin state (count:283 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:61085400-61093200	Weak transcription	K562	blood
2	chr7:61087600-61098000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr7:61087800-61098000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr7:61091400-61098000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr7:61092200-61099600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:61093800-61097200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:61095400-61095600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
8	chr7:61095400-61095600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
9	chr7:61095400-61095600	ZNF genes & repeats	Fetal Lung	lung
10	chr7:61095400-61097000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:61096400-61097000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:61096600-61098000	ZNF genes & repeats	Liver	Liver
13	chr7:61097000-61099400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr7:61097200-61097800	ZNF genes & repeats	Psoas Muscle	Psoas
15	chr7:61097400-61098000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
16	chr7:61097600-61098000	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr7:61097600-61098000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr7:61097800-61099200	Weak transcription	Psoas Muscle	Psoas
19	chr7:61098000-61099200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:61098000-61099400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:61098000-61099400	Weak transcription	Liver	Liver
22	chr7:61098000-61099400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:61098200-61099400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr7:61099200-61100400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:61099200-61100400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr7:61099200-61100400	ZNF genes & repeats	Psoas Muscle	Psoas
27	chr7:61099200-61100400	ZNF genes & repeats	Thymus	Thymus
28	chr7:61099400-61100000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
29	chr7:61099400-61100200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
30	chr7:61099400-61100200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
31	chr7:61099400-61100400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
32	chr7:61099400-61100400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr7:61099400-61100400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:61099400-61100400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
35	chr7:61099400-61100400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:61099400-61100400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
37	chr7:61099400-61100400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
38	chr7:61099400-61100400	ZNF genes & repeats	Liver	Liver
39	chr7:61099400-61100400	ZNF genes & repeats	Brain Substantia Nigra	brain
40	chr7:61099400-61100400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
41	chr7:61099400-61100400	Bivalent/Poised TSS	Right Ventricle	heart
42	chr7:61099400-61100400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
43	chr7:61099600-61099800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:61099600-61099800	ZNF genes & repeats	Placenta	Placenta
45	chr7:61099600-61099800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
46	chr7:61099600-61099800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
47	chr7:61099600-61100200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
48	chr7:61099600-61100200	ZNF genes & repeats	Adipose Nuclei	Adipose
49	chr7:61099600-61100200	ZNF genes & repeats	Colonic Mucosa	Colon
50	chr7:61099600-61100400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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